BAC Information

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BAC

Clone NameB6Ng01-052A15
Chromosome13 (Build37)
Map Location 50,086,401 - 50,231,986
singlet/doubletdoublet
Overlap geneLOC625110, LOC676907, LOC667546, LOC667552, LOC100040085
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099
Downstream geneLOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052A15.bB6Ng01-052A15.g
ACCDH875510DH875511
length1,090409
definitionDH875510|Mus musculus domesticus DNA, BAC clone: B6Ng01-052A15, 5' end.DH875511|Mus musculus domesticus DNA, BAC clone: B6Ng01-052A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,230,894 - 50,231,986)(50,086,401 - 50,086,816)
sequence
gaattcctgtcttcagaaaaactcacaatataaattgaaatagtgcgaca
catttaaacatagtctatgtctacagtgtgtactgtcctttgtctcagag
aaggggatcttaatgcctgccctatcatgtgtgctaataacattaaatag
tgaactccaaaggtttatcataaaatagtcatggcttgtcatacttggtt
ttgctctcaaagtgtctcaaaattaaatgttattttccactgccttttct
gatcattcattgtactgctatagtgatggataattttaatccagaatttt
ttttctcagctgtagaaacttccccaattttttcatgagttatccagtac
ttttggaaaatagtttcaatctcttgctaactagccctcatggtccatga
ggactttctatgtttcctccaaaccttccatttttgaattaatttaatga
tttcatatatttttgagaactctgtacaggagaactgtgtccacttcagt
catgcccagcctctcagctcttcccatcccccccaccaactcatggtttc
ttcattgttgcacatttatgtgtgtataataagttcagggtctgagatgc
aagttctggaagagagcaaagagcaatagtgacagctcatcttgttggtg
gagactcttgagatctgggaaagggagatttcccaggcatcaggactgtt
ttaactgtagcccttggaagaatcattattaatccaagtgttacaagttc
atttaaattaagttcacacttggacacaaaaatgtctatgtgtgttgtca
atgattccttttaatagcccccatcgctctgaaaggggagtgtcttagag
cttccattgctgtaaagagacaacatgaacaaggcaaggtataaaatata
aatggggactggcttacaggttcagaagttcagcccattatcaccacagc
cagaaacatgacatctttcagacaggcatggtactagaaaaaaatgctaa
gagttttatgccttgatcagaagccagcaggaaagaatagttcatgcagg
taggaagatctcaaggccacccttaagtgaatcaattcct
tttggtccagtacaggaggaaaagaagatgatcatcccaatcccttaagt
ttcatcacttctagtcatagtagtgtgtgtttgtttgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgcgtccatgcttacatacaatccc
cttcctatggtttgttgctttggtgttatttcccatgatttcttgggtgt
agttagccttcttggtctatagttttctttctaggatcttttatagaaat
ttatttatagatagatattgcttaattttggttttgtcatgtaatatctt
gttaactctttctatggtgattgaaagtttttctggctataatattgtgg
gcgtaagtcgtgactcttttagagaattattacatatgccaaagctcttc
tggctttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50230894_50231986
seq2: B6Ng01-052A15.b_45_1134 (reverse)

seq1  AGGAATTGTATCACTTTATGGGTGGGCCTTGAGATCCTCCTACCTGCATG  50
      ||||||||  |||| ||| |||| |||||||||||| |||||||||||||
seq2  AGGAATTGATTCAC-TTAAGGGT-GGCCTTGAGATCTTCCTACCTGCATG  48

seq1  AACTAATCTTTTCCTGGCTGGCTTCTGATCAAGGCATAAAACTCTTAGCA  100
      ||||| || |||||| ||||||||||||||||||||||||||||||||||
seq2  AACTATTC-TTTCCT-GCTGGCTTCTGATCAAGGCATAAAACTCTTAGCA  96

seq1  TTTTTTTCTAGTACCATGCCTGTCTGAAAGATGTCATGTTTCTGGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAGTACCATGCCTGTCTGAAAGATGTCATGTTTCTGGCTGTG  146

seq1  GTGATAATGGGCTGAACTTCTGAACCTGTAAGCCAGTCCCCATTTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATGGGCTGAACTTCTGAACCTGTAAGCCAGTCCCCATTTATATT  196

seq1  TTATACCTTGCCTTGTTCATGTTGTCTCTTTACAGCAATGGAAGCTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTTGCCTTGTTCATGTTGTCTCTTTACAGCAATGGAAGCTCTAA  246

seq1  GACACTCCCCTTTCAGAGCGATGGGGGCTATTAAAAGGAATCATTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCCCTTTCAGAGCGATGGGGGCTATTAAAAGGAATCATTGACAA  296

seq1  CACACATAGACATTTTTGTGTCCAAGTGTGAACTTAATTTAAATGAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGACATTTTTGTGTCCAAGTGTGAACTTAATTTAAATGAACTT  346

seq1  GTAACACTTGGATTAATAATGATTCTTCCAAGGGCTACAGTTAAAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTTGGATTAATAATGATTCTTCCAAGGGCTACAGTTAAAACAGT  396

seq1  CCTGATGCCTGGGAAATCTCCCTTTCCCAGATCTCAAGAGTCTCCACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCCTGGGAAATCTCCCTTTCCCAGATCTCAAGAGTCTCCACCAA  446

seq1  CAAGATGAGCTGTCACTATTGCTCTTTGCTCTCTTCCAGAACTTGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGAGCTGTCACTATTGCTCTTTGCTCTCTTCCAGAACTTGCATCT  496

seq1  CAGACCCTGAACTTATTATACACACATAAATGTGCAACAATGAAGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGAACTTATTATACACACATAAATGTGCAACAATGAAGAAACC  546

seq1  ATGAGTTGGTGGGGGGGATGGGAAGAGCTGAGAGGCTGGGCATGACTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGGTGGGGGGGATGGGAAGAGCTGAGAGGCTGGGCATGACTGAA  596

seq1  GTGGACACAGTTCTCCTGTACAGAGTTCTCAAAAATATATGAAATCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACAGTTCTCCTGTACAGAGTTCTCAAAAATATATGAAATCATTA  646

seq1  AATTAATTCAAAAATGGAAGGTTTGGAGGAAACATAGAAAGTCCTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCAAAAATGGAAGGTTTGGAGGAAACATAGAAAGTCCTCATGG  696

seq1  ACCATGAGGGCTAGTTAGCAAGAGATTGAAACTATTTTCCAAAAGTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGGGCTAGTTAGCAAGAGATTGAAACTATTTTCCAAAAGTACTG  746

seq1  GATAACTCATGAAAAAATTGGGGAAGTTTCTACAGCTGAGAAAAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTCATGAAAAAATTGGGGAAGTTTCTACAGCTGAGAAAAAAAATT  796

seq1  CTGGATTAAAATTATCCATCACTATAGCAGTACAATGAATGATCAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTAAAATTATCCATCACTATAGCAGTACAATGAATGATCAGAAAA  846

seq1  GGCAGTGGAAAATAACATTTAATTTTGAGACACTTTGAGAGCAAAACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGAAAATAACATTTAATTTTGAGACACTTTGAGAGCAAAACCAA  896

seq1  GTATGACAAGCCATGACTATTTTATGATAAACCTTTGGAGTTCACTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACAAGCCATGACTATTTTATGATAAACCTTTGGAGTTCACTATTT  946

seq1  AATGTTATTAGCACACATGATAGGGCAGGCATTAAGATCCCCTTCTCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTAGCACACATGATAGGGCAGGCATTAAGATCCCCTTCTCTGA  996

seq1  GACAAAGGACAGTACACACTGTAGACATAGACTATGTTTAAATGTGTCGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGACAGTACACACTGTAGACATAGACTATGTTTAAATGTGTCGC  1046

seq1  ACTATTTC-TTTTATATTGTGAGTTTTTCTGAAGACAGGAATTC  1093
      ||||||||  ||||||||||||||||||||||||||||||||||
seq2  ACTATTTCAATTTATATTGTGAGTTTTTCTGAAGACAGGAATTC  1090

seq1: chr13_50086401_50086816
seq2: B6Ng01-052A15.g_65_479

seq1  GAATTCTTTGGTCCAGTACAGGAGGAAAAGAAGATGATCATCCCAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTCCAGTACAGGAGGAAAAGAAGATGATCATCCCAATCCC  50

seq1  TTAAGTTTCATCACTTCTAGTCATAGTAGTGTGTGTTTGTTTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCATCACTTCTAGTCATAGTAGTGTGTGTTTGTTTGTGTGTGT  100

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTCCATGCTTACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTCCATGCTTACATAC  150

seq1  AATCCCCTTCCTATGGTTTGTTGCTTTGGTGTTATTTCCCATGATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTTCCTATGGTTTGTTGCTTTGGTGTTATTTCCCATGATTTCTT  200

seq1  GGGTGTAGTTAGCCTTCTTGGTCTATAGTTTTCTTTCTAGGATCTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGTTAGCCTTCTTGGTCTATAGTTTTCTTTCTAGGATCTTTTAT  250

seq1  AGAAATTTATTTATAGATAGATATTGCTTAAATTTGGTTTTGTCATGTAA  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAAATTTATTTATAGATAGATATTGCTTAATTTTGGTTTTGTCATGTAA  300

seq1  TATCTTGTTAACTCTTTCTATGGTGATTGAAAGTTTTTCTGGCTATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTAACTCTTTCTATGGTGATTGAAAGTTTTTCTGGCTATAATA  350

seq1  TTGTGGGCGGAAGTCGTGACTCTTTTAGAGAATGCAGGACATATGCCAAA  400
      ||||||||| |||||||||||||||||||||||  |  ||||||||||||
seq2  TTGTGGGCGTAAGTCGTGACTCTTTTAGAGAAT-TATTACATATGCCAAA  399

seq1  GCCCTTCTGGCTTTTA  416
      || |||||||||||||
seq2  GCTCTTCTGGCTTTTA  415