BAC Information

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BAC

Clone NameB6Ng01-052J03
Chromosome13 (Build37)
Map Location 106,895,626 - 107,002,863
singlet/doubletdoublet
Overlap geneOlfr717-ps1
Upstream gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J03.bB6Ng01-052J03.g
ACCDH875885DH875886
length1,0961,053
definitionDH875885|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J03, 5' end.DH875886|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,895,626 - 106,896,549)(107,001,804 - 107,002,863)
sequence
gaattctcaattagttctgtattccacttcttcattggtttgttttgggt
tttggtgattaacatcttgagttctttatatattttggatattagccctc
tttcggatgtgagggttagtgaattttttttccaatctgtatttcgctga
tttgtcttattgactatgtcctttgccttatagaagctttcccgtttcat
gaggttccatttatcaattcttgatcttagagcatgaaccattggagttc
tacttagaaaatttccccctgtgccaatgagttcaatgctctttcccact
ttttcttctattagattcagtgtatctggttttatgttgaggtcctttat
ccacttgaacttgagctttgtacaaggtgacaaatatgagtctattttca
tcattcaacctaaagacagccagttagaccagcactacttattaaagata
ctttctttttcctgttgtatatttttggcatctttgtcaaagatcatgtg
actataagtgtgcagttttatttctgggccttcaattctattccactgac
caatgtgtctgtaccaataccatgcagtttttaatcactattgctctgta
gtaaagcttgaggtcagggatagtgattctcccagctgttcttttattgt
tcttgttgttgttgttttgttttgtttttagtattctctatttatttatt
tattcatactccatattttatcactccctgtctaccctccaactgttcca
cataccataccttctctcaccacaatgtctccacatggatgtccctatcc
ccaaccccaggcatatatcaaagcacaaactaaactttgcaattgttctg
aattgcttattttatctctataaggctattatgactttttttccaatttg
tatataatcaatattttagtcttttcacgattcaacaaccaaatgccata
acctaatcactcagataataaatgaatattttcttatacttcttgaggct
tgagtataaaataatttgtttgcttggcttcttgtttcctcttgtgttcc
ttcgaatgtagttgacctgaatggaatatggcctatcccctcatag
gaattctgtggaaatggcaatcaaacaggattaaatgaacttcatttatg
attcttttgttccatattatgaacatgttcatgctaccttcttggttttg
cctaaatatccttaataaaagaaattcattatgtgctaagatttattgat
ccatctttgaactgcttttttcactgtaggataacaggatcatcaggtat
attttccagggctataagaacaaaataatttggaggaatgtaagaatttg
gtattggagggtagatttgggattactggtttaattataggaaaatagat
atagaagaaaattatgtgtcatcccaagagatactcaacttcatctgttg
taatactacaggtcttaagccaaaaaataatccccattaagatcccactg
catactaatttattatggttcaggttctgtcagattgtattgggaaagag
taactatgaggagagatgataacaaagactatttcagagaagtgttaact
aaaagcagttgcttgggtctagataaatactgaaggaaaggaatgatggt
tctgcagttaggctcactaccctttaatcatactgtctcctcctagaaag
tactgagaaagcaaagtttttcacaactcctttagtaacgagactgtaac
tggagtcaaaattatacaatttataatctcaaccccactaaatatcattc
ctgctttactgaaaaaaatgtatctaattatagaaaaaaatgtttcagac
tccttgggaaacatgagataataggctataagaatcattactttccagag
tttgcaagttagaaaagatatgcactttcaagcatatctgtctccaagga
ttacagactgcagtcgattatttctgcatctgccttgtgtgaacacaatc
ccattgctaatatgtccctcttattaaaaaaaattgaaacatattgcatg
ctgattctttctttctctttaaaaaaatagatattttctttatttacatt
tcaaatgctacccctttctagtttcccctccgaaatccctatcgaccccc
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106895626_106896549
seq2: B6Ng01-052J03.b_227_1140

seq1  GAAGCTTTCCCGTTTCATGAGGTTCCATTTATCAATTCTTGATCTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTCCCGTTTCATGAGGTTCCATTTATCAATTCTTGATCTTAGAG  50

seq1  CATGAACCATTGGAGTTCTACTTAGAAAATTTCCCCCTGTGCCAATGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCATTGGAGTTCTACTTAGAAAATTTCCCCCTGTGCCAATGAGT  100

seq1  TCAATGCTCTTTCCCACTTTTTCTTCTATTAGATTCAGTGTATCTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTCTTTCCCACTTTTTCTTCTATTAGATTCAGTGTATCTGGTTT  150

seq1  TATGTTGAGGTCCTTTATCCACTTGAACTTGAGCTTTGTACAAGGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAGGTCCTTTATCCACTTGAACTTGAGCTTTGTACAAGGTGACA  200

seq1  AATATGAGTCTATTTTCATCATTCAACCTAAAGACAGCCAGTTAGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGTCTATTTTCATCATTCAACCTAAAGACAGCCAGTTAGACCAG  250

seq1  CACTACTTATTAAAGATACTTTCTTTTTCCTGTTGTATATTTTTGGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTATTAAAGATACTTTCTTTTTCCTGTTGTATATTTTTGGCATC  300

seq1  TTTGTCAAAGATCATGTGACTATAAGTGTGCAGTTTTATTTCTGGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAAGATCATGTGACTATAAGTGTGCAGTTTTATTTCTGGGCCTT  350

seq1  CAATTCTATTCCACTGACCAATGTGTCTGTACCAATACCATGCAGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTATTCCACTGACCAATGTGTCTGTACCAATACCATGCAGTTTTT  400

seq1  AATCACTATTGCTCTGTAGTAAAGCTTGAGGTCAGGGATAGTGATTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTATTGCTCTGTAGTAAAGCTTGAGGTCAGGGATAGTGATTCTCC  450

seq1  CAGCTGTTCTTTTATTGTTCTTGTTGTTGTTGTTTTGTTTTGTTTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCTTTTATTGTTCTTGTTGTTGTTGTTTTGTTTTGTTTTTAGT  500

seq1  ATTCTCTATTTATTTATTTATTCATACTCCATATTTTATCACTCCCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATTTATTTATTTATTCATACTCCATATTTTATCACTCCCTGTC  550

seq1  TACCCTCCAACTGTTCCACATACCATACCTTCTCTCACCACAATGTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCAACTGTTCCACATACCATACCTTCTCTCACCACAATGTCTCC  600

seq1  ACATGGATGTCCCTATCCCCAACCCCAGGCATATATCAAAGCACAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGTCCCTATCCCCAACCCCAGGCATATATCAAAGCACAAACTA  650

seq1  AACTTTGCAATTGTTCTGAATTGCTTATTTTATCTCTATAAGGCTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCAATTGTTCTGAATTGCTTATTTTATCTCTATAAGGCTATTAT  700

seq1  GACTTTTTTTCCAATTTGTATATAATCAATATTTTAGTCTTTTCAGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACTTTTTTTCCAATTTGTATATAATCAATATTTTAGTCTTTTCACGATT  750

seq1  CAACAACCAAATGCCATAACCTAATCACCCAGAATAATAAATGAATATTT  800
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  CAACAACCAAATGCCATAACCTAATCACTCAG-ATAATAAATGAATATTT  799

seq1  TCTTATACTTCTTGAGGCTTGAAGTATAAAATTATTTGGTTGGCTTGGCT  850
      ||||||||||||||||||||| |||||||||| |||| ||| ||||||||
seq2  TCTTATACTTCTTGAGGCTTG-AGTATAAAATAATTT-GTTTGCTTGGCT  847

seq1  TCTTGTTATCCTCTTGTTGTTTCCTTCGATGGTAGTTTGAACTGAATAGT  900
      ||||||| |||||||||   |||||||||  |||| |||| |||||| | 
seq2  TCTTGTT-TCCTCTTGT--GTTCCTTCGAATGTAG-TTGACCTGAATGGA  893

seq1  ATTAATGGCCTCATCCCCTCATAG  924
      ||  ||||||| ||||||||||||
seq2  AT--ATGGCCT-ATCCCCTCATAG  914

seq1: chr13_107001804_107002863
seq2: B6Ng01-052J03.g_67_1119 (reverse)

seq1  GGGGGGGGTCGATAGGGGATTTCGGGAGGGGAAACTAGGAAAGGGGTAGC  50
      |||||||||||||| |||||||| ||||||||||||| ||||||||||||
seq2  GGGGGGGGTCGATA-GGGATTTC-GGAGGGGAAACTA-GAAAGGGGTAGC  47

seq1  ATTTGAAATGTAAATAAAGAAAATATCTATTTTTTTAAAGAGGAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTTGAAATGTAAATAAAGAAAATATCTATTTTTTTAAAGA-GAAAGAAA  96

seq1  GAATCAGCATTGGCAATATGTTTCAATTTTTTTTTAATAAGAGGGACATA  150
      ||||||||||  |||||||||||||| |||||||||||||||||||||||
seq2  GAATCAGCAT--GCAATATGTTTCAA-TTTTTTTTAATAAGAGGGACATA  143

seq1  TTAGCAATGGGATTGTGTTCACACAAGGCAGATGCAGAAATAATCGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATGGGATTGTGTTCACACAAGGCAGATGCAGAAATAATCGACTG  193

seq1  CAGTCTGTAATCCTTGGAGACAGATATGCTTGAAAGTGCATATCTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTAATCCTTGGAGACAGATATGCTTGAAAGTGCATATCTTTTCT  243

seq1  AACTTGCAAACTCTGGAAAGTAATGATTCTTATAGCCTATTATCTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCAAACTCTGGAAAGTAATGATTCTTATAGCCTATTATCTCATGT  293

seq1  TTCCCAAGGAGTCTGAAACATTTTTTTCTATAATTAGATACATTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGGAGTCTGAAACATTTTTTTCTATAATTAGATACATTTTTTTC  343

seq1  AGTAAAGCAGGAATGATATTTAGTGGGGTTGAGATTATAAATTGTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCAGGAATGATATTTAGTGGGGTTGAGATTATAAATTGTATAAT  393

seq1  TTTGACTCCAGTTACAGTCTCGTTACTAAAGGAGTTGTGAAAAACTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCCAGTTACAGTCTCGTTACTAAAGGAGTTGTGAAAAACTTTGC  443

seq1  TTTCTCAGTACTTTCTAGGAGGAGACAGTATGATTAAAGGGTAGTGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTACTTTCTAGGAGGAGACAGTATGATTAAAGGGTAGTGAGCC  493

seq1  TAACTGCAGAACCATCATTCCTTTCCTTCAGTATTTATCTAGACCCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAGAACCATCATTCCTTTCCTTCAGTATTTATCTAGACCCAAGC  543

seq1  AACTGCTTTTAGTTAACACTTCTCTGAAATAGTCTTTGTTATCATCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTTAGTTAACACTTCTCTGAAATAGTCTTTGTTATCATCTCTC  593

seq1  CTCATAGTTACTCTTTCCCAATACAATCTGACAGAACCTGAACCATAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTTACTCTTTCCCAATACAATCTGACAGAACCTGAACCATAATA  643

seq1  AATTAGTATGCAGTGGGATCTTAATGGGGATTATTTTTTGGCTTAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTATGCAGTGGGATCTTAATGGGGATTATTTTTTGGCTTAAGACC  693

seq1  TGTAGTATTACAACAGATGAAGTTGAGTATCTCTTGGGATGACACATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATTACAACAGATGAAGTTGAGTATCTCTTGGGATGACACATAAT  743

seq1  TTTCTTCTATATCTATTTTCCTATAATTAAACCAGTAATCCCAAATCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATATCTATTTTCCTATAATTAAACCAGTAATCCCAAATCTAC  793

seq1  CCTCCAATACCAAATTCTTACATTCCTCCAAATTATTTTGTTCTTATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATACCAAATTCTTACATTCCTCCAAATTATTTTGTTCTTATAGC  843

seq1  CCTGGAAAATATACCTGATGATCCTGTTATCCTACAGTGAAAAAAGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAATATACCTGATGATCCTGTTATCCTACAGTGAAAAAAGCAGT  893

seq1  TCAAAGATGGATCAATAAATCTTACCACATAATGAATTTCTTTTATTAAG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCAAAGATGGATCAATAAATCTTAGCACATAATGAATTTCTTTTATTAAG  943

seq1  GATATTTAGGCAAAACCAAGAAGGTAGCATGAACATGTTCATAATATGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAGGCAAAACCAAGAAGGTAGCATGAACATGTTCATAATATGGA  993

seq1  ACAAAAGAATCATAAATGAAGTTCATTTAATCCTGTTTGATTGCCATTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAATCATAAATGAAGTTCATTTAATCCTGTTTGATTGCCATTTC  1043

seq1  CACAGAATTC  1060
      ||||||||||
seq2  CACAGAATTC  1053