BAC Information

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BAC

Clone NameB6Ng01-052J16
Chromosome13 (Build37)
Map Location 12,953,291 - 13,088,103
singlet/doubletdoublet
Overlap geneLOC100039999, LOC100039754
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream genePrl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J16.bB6Ng01-052J16.g
ACCDH875909DH875910
length1,111940
definitionDH875909|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J16, 5' end.DH875910|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,953,291 - 12,954,306)(13,087,149 - 13,088,103)
sequence
gaattctcctctgaagaaacagacttggaggaggaagcagctcgttatga
gagaaaaaagtaccagccagataaaatgctagctaatcagttaaggaaaa
agccaaaagcggctggcgaaggccagcatgctgttcagcctccaggcagt
cggcttcaaggtcatagtgcacctccgccctatgcggaggccccgccctg
cataagccgtcagctctgcgcagagaggcaatggacagagaggcaatgcg
cagactcgttcattcctagagaggaacaaaggaaaatgcaacaggcattt
ccggtctttgaaggagccgagggtgggcatgtccatgctccggtagaatt
tgtgcagattaaagagcttgccgagtcggtccgtaaatatggaaccaatg
ctaattttaccttggtgcagttagacaggcttgccggcatggcactaact
cctgccgactggcaaatgattgcaaaagccgctctccctagtatgggcaa
atatatggaatggagagctctatggcaagaggctgcacaagtgcaggcct
gagcaaacgctgctgctttgactccagagcagagagattggacttttggt
aggggtaaacccccgtggcggagaaaaagcctcacatgtgattcaacatt
gccttgaggcatggagtgcttgggggaaacccaaactccttaagactgat
aatggaccagcttatacacatcaaaaattccagcagttctgccgtcagat
ggacgtgacccacctgactggacttccatacaaccctcaaggacagggta
ttgttgagcgtgcgcatcgcaccctcaaatcctatctattaaaacagaaa
gggggaggaggctctacaccgagtaccaagagtgtctgtgtctatggcac
tctttacactcaattttttaaatcttgatgctcatggccatactgcggct
gaacgtcattgttcagagccagataggcccaatgagatggttaaatggaa
aaatgtccttgataataaatgggatggcccggattctatttgataagatc
tccggggagctttttggtgttttcacagatgaagacaacccattggatac
agaatactcac
gaattccaggacagccagggctatacagagaaacactgtctcaaaaacaa
aaacaaaacaaaacaaaacaaacaaacaaacaaaaaaaagaactggtgtt
ttcaggaaatttcctggtgataaaagttgaagtatttgtgataattaatg
aaagacaaagaaagacagacactactgatcacacaatttgcagagtactg
aaagtcaatatgattatgattgttatgcacaatccccatatatttgaaat
tttttaaaatgtttaaaacccctcagaacacaataattgaatgggtctta
atttctttaaaaatttcttcaaacatagtcatctaaattcttatcttcat
tgtaccatctttgacatataccacatgttctttaccttgtgtataccaag
acttctttggactttcctcaatttcttctcatattcacattatttagtgt
taatattcccttctcatcctcatattgggtgaaagcacatggtatataat
gaaatataaagagtctcttccatttgtctaagaatttcataaattcgttg
tttttaatagatgcgtagtacaccattgtgtaattttctgtatccattcc
tctgttgagggacatctgggttctttccagtttctggctattacaaataa
ggcttctatgaacatggtgaattatcgatgcttattacaagttggagcat
cttttaggtatatgtccagtagtggtattgctggatcttcctgtagaact
atgtctaattttctgaggaccaaaaactgatttccagagtggttgtacca
gctttcattccaccagcaaggaggagtgttcctgtttctccacatcctcg
ccagcaactgctgtccctgagatttgatctagcattctactggtgtgagt
gaatttcagggtgtgattgaatttcctgatactaggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12953291_12954306
seq2: B6Ng01-052J16.b_145_1154

seq1  GCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCAGGCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCAGGCAGTC  50

seq1  GGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGGCCCCGCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGGCCCCGCCCTGC  100

seq1  ATAAGCCGTCAGCTCTGCGCAGAGAGGCAATGGACAGAGAGGCAATGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCGTCAGCTCTGCGCAGAGAGGCAATGGACAGAGAGGCAATGCGC  150

seq1  AGACTCGTTCATTCCTAGAGAGGAACAAAGGAAAATGCAACAGGCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGTTCATTCCTAGAGAGGAACAAAGGAAAATGCAACAGGCATTTC  200

seq1  CGGTCTTTGAAGGAGCCGAGGGTGGGCATGTCCATGCTCCGGTAGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTTGAAGGAGCCGAGGGTGGGCATGTCCATGCTCCGGTAGAATTT  250

seq1  GTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGC  300

seq1  TAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTC  350

seq1  CTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAA  400

seq1  TATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGTGCAGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGTGCAGGCCTG  450

seq1  AGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGGTA  500

seq1  GGGGTAAACCCCCGTGGCGGAGAAAAAGCCTCACATGTGATTCAACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAACCCCCGTGGCGGAGAAAAAGCCTCACATGTGATTCAACATTG  550

seq1  CCTTGAGGCATGGAGTGCTTGGGGGAAACCCAAACTCCTTAAGACTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGCATGGAGTGCTTGGGGGAAACCCAAACTCCTTAAGACTGATA  600

seq1  ATGGACCAGCTTATACACATCAAAAATTCCAGCAGTTCTGCCGTCAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCAGCTTATACACATCAAAAATTCCAGCAGTTCTGCCGTCAGATG  650

seq1  GACGTGACCCACCTGACTGGACTTCCATACAACCCTCAAGGACAGGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGACCCACCTGACTGGACTTCCATACAACCCTCAAGGACAGGGTAT  700

seq1  TGTTGAGCGTGCGCATCGCACCCTCAAATCCTATCTATTAAAACAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCGTGCGCATCGCACCCTCAAATCCTATCTATTAAAACAGAAAG  750

seq1  GGGGAGGAGGCTCTACACCGAGTACCAAGAGTGTCTGTGTCTATGGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAGGCTCTACACCGAGTACCAAGAGTGTCTGTGTCTATGGCACT  800

seq1  CTTTACACTCAATTTTTTAAATCTTGATGCTCATGGCCATACTGCGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTCAATTTTTTAAATCTTGATGCTCATGGCCATACTGCGGCTG  850

seq1  AACGTCATTGTTCAGAGCCAGATAGGCCCAATGAGATGGTTAAATGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCATTGTTCAGAGCCAGATAGGCCCAATGAGATGGTTAAATGGAAA  900

seq1  AATGTCCTTGATAATAAATGGTATGGCCCGGATCCTATTTTGATAAGATC  950
      ||||||||||||||||||||| ||||||||||| ||| ||||||||||||
seq2  AATGTCCTTGATAATAAATGGGATGGCCCGGATTCTA-TTTGATAAGATC  949

seq1  T-CGGGGAGCTGTTTGTGTTTTTCCACAGAATGAAGACAACCCATTTTGG  999
      | ||||||||| |||| || ||| ||||| ||||||||||||||  ||||
seq2  TCCGGGGAGCTTTTTG-GTGTTTTCACAG-ATGAAGACAACCCA--TTGG  995

seq1  ATACCAGAAATACTCAC  1016
      ||| ||| |||||||||
seq2  ATA-CAG-AATACTCAC  1010

seq1: chr13_13087149_13088103
seq2: B6Ng01-052J16.g_67_1006 (reverse)

seq1  ACATCCTTAGTCATCAGGAAAATTCAAATCAAAACCCTGAAATTCCACCT  50
      |||||| |||| |||||| |||||| |||| | ||||||||||||   ||
seq2  ACATCC-TAGT-ATCAGG-AAATTC-AATC-ACACCCTGAAATTC--ACT  43

seq1  CACACCAGTTAGAATGGCTAAGATCAAAATCTCAGGTGACAGCAGATGCT  100
      |||||||| |||||| ||| ||||| |||||||||| |||||||| ||||
seq2  CACACCAG-TAGAAT-GCT-AGATC-AAATCTCAGG-GACAGCAGTTGCT  88

seq1  GGCGAGGATGTGGAGAAACAGGAACACTCCTCCTTTGCTGGTGGAATTGA  150
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  GGCGAGGATGTGGAGAAACAGGAACACTCCTCC-TTGCTGGTGGAA-TGA  136

seq1  AAGCTGGTACAACCACTCTGGAAATCAGTTTTTGGTTCCTCAGAAAATTA  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGCTGGTACAACCACTCTGGAAATCAGTTTTTGG-TCCTCAGAAAATTA  185

seq1  GACATAGTTCTACAGGAAGATCCAGCAATACCACTACTGGACATATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTTCTACAGGAAGATCCAGCAATACCACTACTGGACATATACCT  235

seq1  AGAAGATGCTCCAACTTGTAATAAGAACACATGCTTCACCATGTTCATAG  300
      | ||||||||||||||||||||||| |   ||  ||||||||||||||||
seq2  AAAAGATGCTCCAACTTGTAATAAGCATCGATAATTCACCATGTTCATAG  285

seq1  AAGCCTTATTTGTAATAGCCAGAAACTGGAAAGAACCCAGATGTCCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTATTTGTAATAGCCAGAAACTGGAAAGAACCCAGATGTCCCTCA  335

seq1  ACAGAGGAATGGATACAGAAAATTACACAATGGTGTACTACGCATCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAATGGATACAGAAAATTACACAATGGTGTACTACGCATCTATT  385

seq1  AAAAACAACGAATTTATGAAATTCTTAGACAAATGGAAGAGACTCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACGAATTTATGAAATTCTTAGACAAATGGAAGAGACTCTTTAT  435

seq1  ATTTCATTATATACCATGTGCTTTCACCCAATATGAGGATGAGAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATATACCATGTGCTTTCACCCAATATGAGGATGAGAAGGGAA  485

seq1  TATTAACACTAAATAATGTGAATATGAGAAGAAATTGAGGAAAGTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACACTAAATAATGTGAATATGAGAAGAAATTGAGGAAAGTCCAAA  535

seq1  GAAGTCTTGGTATACACAAGGTAAAGAACATGTGGTATATGTCAAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTGGTATACACAAGGTAAAGAACATGTGGTATATGTCAAAGATG  585

seq1  GTACAATGAAGATAAGAATTTAGATGACTATGTTTGAAGAAATTTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATGAAGATAAGAATTTAGATGACTATGTTTGAAGAAATTTTTAAA  635

seq1  GAAATTAAGACCCATTCAATTATTGTGTTCTGAGGGGTTTTAAACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGACCCATTCAATTATTGTGTTCTGAGGGGTTTTAAACATTTT  685

seq1  AAAAAATTTCAAATATATGGGGATTGTGCATAACAATCATAATCATATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTCAAATATATGGGGATTGTGCATAACAATCATAATCATATTG  735

seq1  ACTTTCAGTACTCTGCAAATTGTGTGATCAGTAGTGTCTGTCTTTCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTACTCTGCAAATTGTGTGATCAGTAGTGTCTGTCTTTCTTTG  785

seq1  TCTTTCATTAATTATCACAAATACTTCAACTTTTATCACCAGGAAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTAATTATCACAAATACTTCAACTTTTATCACCAGGAAATTTC  835

seq1  CTGAAAACACCAGTTCTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACACCAGTTCTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTT  885

seq1  TGTTTTTGTTTTTGAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTGAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGG  935

seq1  AATTC  955
      |||||
seq2  AATTC  940