BAC Information

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BAC

Clone NameB6Ng01-053A14
Chromosome13 (Build37)
Map Location 48,509,950 - 48,666,088
singlet/doubletdoublet
Overlap geneZfp169, A830005F24Rik
Upstream gene4931429P17Rik, Id4, LOC667351
Downstream geneAW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053A14.bB6Ng01-053A14.g
ACCDH876207DH876208
length1,131650
definitionDH876207|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A14, 5' end.DH876208|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,509,950 - 48,511,099)(48,665,439 - 48,666,088)
sequence
gaattctctccttccacctttacctgtattccaggggtcaaactcaggtc
cccaggcttcagagacaagtgtatttatgtactgaaccatcttactgggc
cttcaattttaaacaatctgttaaaccaccagaaagccttctcaaggtct
cctttgacccctcttccttcccagactccagcatcttccttgtcctaaca
gatggagaaccattacacacaaaaaggtaatagtttgcttgctgacagta
caagtttatactaatgaacctgtgttttcttatataaagaatcagtacat
ctcccagctcttggaagaagaggtaatagtgaccacttaatttcatctgg
atacatctatgaaggagtcacacccaggttacacttgtcccagggttcct
ttctgcactttgacctaaaattctgtttctgtttcaaatgtccttatttg
ttggtctgagggagctcttggttcctgttagttaaaccctccgcatctgt
cactttggctcaagcagtaggatgtcctatccacaatgacctgttctctc
ctcaagctcgggtctcctgagggcttggccatcttccgtatctctcagca
gtgtccctgagaagatgagaatccattctgccaaacatcagagacacata
gtctcctttgcagggtcatctcgaggtcattctcatgaaatcatgggttt
ctactgaagtgaatgtgacagccagggagatgtgagtccctgaggtcaac
tccctggggtgcctgcaagtgtctcttcaaggacagagaaggagctgcca
ggaagggtcctgcagatgactgcccccctacactacagtctgccctctcc
ccctctccacagacagcgcctgaagggatcgtaaccctcctttcaccaca
gaatgcagacttttccgttcccagaagatgctggggctgaaagttcgagt
ctcttcagtccgagttctcttcaagtccattgccctgtcttcctttctca
gaccctcgtgctttgaggcagcagggtctgactatacatttgagtcatgc
acttcgagatgcttatggaaagagaaaagagagggcccaggaagtgtcca
cactgaatgactgtaattgctggacttctgc
gaattcctgtaggtcctatacctgagtcacctttaactgtaagtttatca
ggggacagaaaattgtactgaagacagtgtatagatatccactcaatggg
aaactacaggattaaggacccatttccttccataaacaagacacgagaga
aagttagagaggaatctacggattcctatgagaagaacttgtgtggacct
ggctttcctcctgacatgaacaaaccatcatggaatagtgatgccaatgc
ccatgggagatctggtgatgccaaaggaggtactacaatttttgtttttt
tttgtttgttttaaagatttatttacttattatatgtaagtacactgtag
ctgtcttcagacaccccagagggcatcagatctcattatggatggttgtg
agccaccatgtggttgctgggatttgaactcaggactccgtgctcttaac
cactgagccatctctccagcccacattttttgtttttaaaatagagggag
gggaaactgtaatcaaaatatggtggcacacacctttagtctcagcactt
ggggtcgggacagttgggatggggtggggggacagaggcaagtagatctc
tgagttctaggctagtttgatctacagctctattttcaggatagatgggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48509950_48511099
seq2: B6Ng01-053A14.b_46_1176

seq1  GAATTCTCTCCTTCCACCTTTACCTGTATTCCAGGGGTCAAACTCAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTCCACCTTTACCTGTATTCCAGGGGTCAAACTCAGGTC  50

seq1  CCCAGGCTTCAGAGACAAGTGTATTTATGTACTGAACCATCTTACTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTCAGAGACAAGTGTATTTATGTACTGAACCATCTTACTGGGC  100

seq1  CTTCAATTTTAAACAATCTGTTAAACCACCAGAAAGCCTTCTCAAGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTTAAACAATCTGTTAAACCACCAGAAAGCCTTCTCAAGGTCT  150

seq1  CCTTTGACCCCTCTTCCTTCCCAGACTCCAGCATCTTCCTTGTCCTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACCCCTCTTCCTTCCCAGACTCCAGCATCTTCCTTGTCCTAACA  200

seq1  GATGGAGAACCATTACACACAAAAAGGTAATAGTTTGCTTGCTGACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAACCATTACACACAAAAAGGTAATAGTTTGCTTGCTGACAGTA  250

seq1  CAAGTTTATACTAATGAACCTGTGTTTTCTTATATAAAGAATCAGTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTATACTAATGAACCTGTGTTTTCTTATATAAAGAATCAGTACAT  300

seq1  CTCCCAGCTCTTGGAAGAAGAGGTAATAGTGACCACTTAATTTCATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTCTTGGAAGAAGAGGTAATAGTGACCACTTAATTTCATCTGG  350

seq1  ATACATCTATGAAGGAGTCACACCCAGGTTACACTTGTCCCAGGGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTATGAAGGAGTCACACCCAGGTTACACTTGTCCCAGGGTTCCT  400

seq1  TTCTGCACTTTGACCTAAAATTCTGTTTCTGTTTCAAATGTCCTTATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACTTTGACCTAAAATTCTGTTTCTGTTTCAAATGTCCTTATTTG  450

seq1  TTGGTCTGAGGGAGCTCTTGGTTCCTGTTAGTTAAACCCTCCGCATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGAGGGAGCTCTTGGTTCCTGTTAGTTAAACCCTCCGCATCTGT  500

seq1  CACTTTGGCTCAAGCAGTAGGATGTCCTATCCACAATGACCTGTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGCTCAAGCAGTAGGATGTCCTATCCACAATGACCTGTTCTCTC  550

seq1  CTCAAGCTCGGGTCTCCTGAGGGCTTGGCCATCTTCCGTATCTCTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCTCGGGTCTCCTGAGGGCTTGGCCATCTTCCGTATCTCTCAGCA  600

seq1  GTGTCCCTGAGAAGATGAGAATCCATTCTGCCAAACATCAGAGACACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTGAGAAGATGAGAATCCATTCTGCCAAACATCAGAGACACATA  650

seq1  GTCTCCTTTGCAGGGTCATCTCGAGGTCATTCTCATGAAATCATGGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTTGCAGGGTCATCTCGAGGTCATTCTCATGAAATCATGGGTTT  700

seq1  CTACTGAAGTGAATGTGACAGCCAGGGAGATGTGAGTCCCTGAGGTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAGTGAATGTGACAGCCAGGGAGATGTGAGTCCCTGAGGTCAAC  750

seq1  TCCCTGGGGTGCCTGCAAGTGTCTCTTCAAGGACAGAGAAGGAGCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGGTGCCTGCAAGTGTCTCTTCAAGGACAGAGAAGGAGCTGCCA  800

seq1  GGAAGGGTCCTGCAGATGACTGCCCCCCTACACTACAGTCTGCCCTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTCCTGCAGATGACTGCCCCCCTACACTACAGTCTGCCCTCTCC  850

seq1  CCCTCTCCACAGACAGCGCCTGAAGGGATCGTAACCCTCCTTTCACCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCACAGACAGCGCCTGAAGGGATCGTAACCCTCCTTTCACCACA  900

seq1  GAATGCAGACTTTTCCCGTTCCCAGAAGGATGCTGGGGCTGAAAGTTCGA  950
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  GAATGCAGACTTTT-CCGTTCCCAGAA-GATGCTGGGGCTGAAAGTTCGA  948

seq1  GTCTCCTTCAAGTCCGAGTCTCCTTCAAGTCCATTGCCCTGTCTTCCCTT  1000
      |||| |||| |||||||||   ||||||||||||||||||||||| ||||
seq2  GTCT-CTTC-AGTCCGAGTTCTCTTCAAGTCCATTGCCCTGTCTT-CCTT  995

seq1  TCTCCAGACCCTCGTGCTTTGAGGGCAGCAGGGTCTGACTAGTACATTTG  1050
      ||| |||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TCT-CAGACCCTCGTGCTTTGA-GGCAGCAGGGTCTGACTA-TACATTTG  1042

seq1  AGTCATGCAACCTTCCGAAGATGCTAATGAGAGAGAG-AGAGAGAGGGCC  1099
      |||||||||  ||||   ||||||| ||| || |||| | |||||||| |
seq2  AGTCATGCA--CTTC--GAGATGCTTATG-GAAAGAGAAAAGAGAGGG-C  1086

seq1  CCAGGAAGTGTCACACCACTGACATGACTGTGAATATGCTGGACTCTCTG  1149
      |||||||||||| || |||||| |||||||| ||| ||||||||| ||||
seq2  CCAGGAAGTGTC-CA-CACTGA-ATGACTGT-AAT-TGCTGGACT-TCTG  1130

seq1  C  1150
      |
seq2  C  1131

seq1: chr13_48665439_48666088
seq2: B6Ng01-053A14.g_70_719 (reverse)

seq1  CCCCATCTGTCCTGAAACTAGAGCTGTAGATCAGACTAGCCTAGAACTCA  50
      |||||||| |||||||| ||||||||||||||| ||||||||||||||||
seq2  CCCCATCTATCCTGAAAATAGAGCTGTAGATCAAACTAGCCTAGAACTCA  50

seq1  GAGATCTACTTGCCTCTGTCCCCCCACCCCATCCCAACTGTCCCGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTACTTGCCTCTGTCCCCCCACCCCATCCCAACTGTCCCGACCCC  100

seq1  AAGTGCTGAGACTAAAGGTGTGTGCCACCATATTTTGATTACAGTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGAGACTAAAGGTGTGTGCCACCATATTTTGATTACAGTTTCCC  150

seq1  CTCCCTCTATTTTAAAAACAAAAAATGTGGGCTGGAGAGATGGCTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTATTTTAAAAACAAAAAATGTGGGCTGGAGAGATGGCTCAGTG  200

seq1  GTTAAGAGCACGGAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACGGAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  250

seq1  CACAACCATCCATAATGAGATCTGATGCCCTCTGGGGTGTCTGAAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCCATAATGAGATCTGATGCCCTCTGGGGTGTCTGAAGACAG  300

seq1  CTACAGTGTACTTACATATAATAAGTAAATAAATCTTTAAAACAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGTACTTACATATAATAAGTAAATAAATCTTTAAAACAAACAAA  350

seq1  AAAAAACAAAAATTGTAGTACCTCCTTTGGCATCACCAGATCTCCCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAATTGTAGTACCTCCTTTGGCATCACCAGATCTCCCATGG  400

seq1  GCATTGGCATCACTATTCCATGATGGTTTGTTCATGTCAGGAGGAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGCATCACTATTCCATGATGGTTTGTTCATGTCAGGAGGAAAGCC  450

seq1  AGGTCCACACAAGTTCTTCTCATAGGAATCCGTAGATTCCTCTCTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACACAAGTTCTTCTCATAGGAATCCGTAGATTCCTCTCTAACTT  500

seq1  TCTCTCGTGTCTTGTTTATGGAAGGAAATGGGTCCTTAATCCTGTAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGTGTCTTGTTTATGGAAGGAAATGGGTCCTTAATCCTGTAGTTT  550

seq1  CCCATTGAGTGGATATCTATACACTGTCTTCAGTACAATTTTCTGTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGAGTGGATATCTATACACTGTCTTCAGTACAATTTTCTGTCCCC  600

seq1  TGATAAACTTACAGTTAAAGGTGACTCAGGTATAGGACCTACAGGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTTACAGTTAAAGGTGACTCAGGTATAGGACCTACAGGAATTC  650