BAC Information

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BAC

Clone NameB6Ng01-053I04
Chromosome13 (Build37)
Map Location 27,212,561 - 27,293,652
singlet/doubletdoublet
Overlap genePrl3d2, Prl3d3, Prl3c1
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1
Downstream genePrl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053I04.bB6Ng01-053I04.g
ACCDH876539DH876540
length1,147941
definitionDH876539|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I04, 5' end.DH876540|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,292,510 - 27,293,652)(27,212,561 - 27,213,400)
sequence
gaattcaatggacctggataggaaatatgtaaagaagtgaaggaaaggaa
tcgaccaaatggtgatggtaaaattgattgttgtgagaattataatataa
tgattaatagtggggagttgaggctgatgaagcccaatttcgcatggtta
cttgacatgcaagaggtgcaagttctgctcaaactttctgagcatcagtt
cattaattttccagtagtctttcacattagagaaatttttgtgcagaata
cacgcaccatggtcaacagattgctagtggaagtgtctagaaaagtagct
ctaagcaaaaattctctctccctatgtcttttttctaccactttcactat
tatagtcccattttaatgaaaataggttttgtataagttaccgatgctag
tgataaaattatatacaacatataacagtgaagtttgaatcacccaaaaa
ttgtttatgactgggaatcagaagggaaatataaaacagacactagaact
cttcagaatgtaaaccagagaaaacggaagttatcctcgttattatgcag
acaatgatttagttaagctgacttttttattaagatacaggagatggtag
atcactcatgaagaaatacacaaataatgaaaccaaaataagaccatgag
agtttcaattgggtaacatgctgacagaggagccatttgggttatatcat
aaacgccactactgtatttgattttgtcaacatgtgtatggatatactca
accattagtatccaattcagataaaagtttttaaacctactagcaaggtg
gtggcaaatgattttatgaaagttaagcatctgatataatctgacatttg
attgagatagttactatgtgctgtgatattttccagtctaatcctattgg
atctgaggttattgtacctcttatactcctagtattagcacacagcacaa
atagctggaggtccgctaaagttgttttggtaaataatatagataaatac
gcaccttttttacagaatgttgtagaaatggtttggcacatcttggtggt
ttttattcctaaacaaactccctctagttaacttttgagtctcgggaggg
aatgaaataaatttaacctttgtagttttgaatggaataaatatgtt
gaattcttggatttcctcggattctattgttatgtctcccatttcatttc
tgattttgttaattaggatactgtccctgtgctctctagtgagtctgact
aagggtttatctatcttgctgattttctcaaagtacaagctcctggtttg
gttgattctttgtataattctttttgtttctacttggttgatttcagccc
tgagttttattatttcctgccatttactcctcttgggtgaatttgcttcc
tttggttctagagctttcagatgtgctgtcaaactgctggtgtatgctct
ctccactgtcttttgggaggcaattgtagctatgagttttcctctaagga
ctgcttcctttatgtctcataagtttgggtgtgttgtggcttcattttca
ttaaactctaaaaagtctttaattttttttttttaatttcttgcttgacc
aagttatcattgagtagagtgttgttcagcttccatgtgtatgcggcatt
tctattatttatgttgttaatcaaaatcagtcttagtctgtggtgacctg
ataggattcatggttttattttaatatttttgtgtctgttgagggctttt
acctcatttactgagataaatattttgcagtgtttctggttaatggaaga
gatttgagtttagtaaaacagtctagaaaaattgtctgttagagctatag
agaggacaaatgtttatatattattgatagcattgattataaccaaaaac
agtaggaaactttgcagaagacatggcagacataagatcttgaattaagg
tgatgtataggaggagaaattcctttctcctgctggccagaaaatgagta
atcgatcagtccagatgatctttctgattttgaaaaatgacttggacctc
tccagatcactgggggatttgcatatgacaatatgacgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27292510_27293652
seq2: B6Ng01-053I04.b_46_1192 (reverse)

seq1  AACATATTTATTCCATTCAAAAACTACAAAGTTTAAA-TTATTTCATTCC  49
      |||||||||||||||||| |||||||||||| ||||| ||||||||||||
seq2  AACATATTTATTCCATTC-AAAACTACAAAGGTTAAATTTATTTCATTCC  49

seq1  CTCCAG-GACTC-AAAGTTAACT-GAGGGAGTATGTTTTAGGAATAAAAA  96
      |||| | ||||| |||||||||| |||||||| || ||||||||||||||
seq2  CTCCCGAGACTCAAAAGTTAACTAGAGGGAGTTTG-TTTAGGAATAAAAA  98

seq1  -CACCAAGATGTGCCAAACCATTTCTAC-ACATTCTGTAAAAAAGGTGCG  144
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCACCAAGATGTGCCAAACCATTTCTACAACATTCTGTAAAAAAGGTGCG  148

seq1  TATTTATCTATATTATTTACCAAAACAACTTTAGCGGACCTCCAGCTATT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTATATTATTTACCAAAACAACTTTAGCGGACCTCCAGCTATT  198

seq1  TGTGCTGTGTGCTAATACTAGGAGTATAAGAGGTACAATAACCTCAGATC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGTGCTAATACTAGGAGTATAAGAGGTACAATAACCTCAGATC  248

seq1  CAATAGGATTAGACTGGAAAATATCACAGCACATAGTAACTATCTCAATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGATTAGACTGGAAAATATCACAGCACATAGTAACTATCTCAATC  298

seq1  AAATGTCAGATTATATCAGATGCTTAACTTTCATAAAATCATTTGCCACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGATTATATCAGATGCTTAACTTTCATAAAATCATTTGCCACC  348

seq1  ACCTTGCTAGTAGGTTTAAAAACTTTTATCTGAATTGGATACTAATGGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTAGTAGGTTTAAAAACTTTTATCTGAATTGGATACTAATGGTT  398

seq1  GAGTATATCCATACACATGTTGACAAAATCAAATACAGTAGTGGCGTTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATCCATACACATGTTGACAAAATCAAATACAGTAGTGGCGTTTA  448

seq1  TGATATAACCCAAATGGCTCCTCTGTCAGCATGTTACCCAATTGAAACTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAACCCAAATGGCTCCTCTGTCAGCATGTTACCCAATTGAAACTC  498

seq1  TCATGGTCTTATTTTGGTTTCATTATTTGTGTATTTCTTCATGAGTGATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCTTATTTTGGTTTCATTATTTGTGTATTTCTTCATGAGTGATC  548

seq1  TACCATCTCCTGTATCTTAATAAAAAAGTCAGCTTAACTAAATCATTGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTCCTGTATCTTAATAAAAAAGTCAGCTTAACTAAATCATTGTC  598

seq1  TGCATAATAACGAGGATAACTTCCGTTTTCTCTGGTTTACATTCTGAAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATAACGAGGATAACTTCCGTTTTCTCTGGTTTACATTCTGAAGA  648

seq1  GTTCTAGTGTCTGTTTTATATTTCCCTTCTGATTCCCAGTCATAAACAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTGTCTGTTTTATATTTCCCTTCTGATTCCCAGTCATAAACAAT  698

seq1  TTTTGGGTGATTCAAACTTCACTGTTATATGTTGTATATAATTTTATCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTGATTCAAACTTCACTGTTATATGTTGTATATAATTTTATCAC  748

seq1  TAGCATCGGTAACTTATACAAAACCTATTTTCATTAAAATGGGACTATAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCGGTAACTTATACAAAACCTATTTTCATTAAAATGGGACTATAA  798

seq1  TAGTGAAAGTGGTAGAAAAAAGACATAGGGAGAGAGAATTTTTGCTTAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAGTGGTAGAAAAAAGACATAGGGAGAGAGAATTTTTGCTTAGA  848

seq1  GCTACTTTTCTAGACACTTCCACTAGCAATCTGTTGACCATGGTGCGTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTTCTAGACACTTCCACTAGCAATCTGTTGACCATGGTGCGTGT  898

seq1  ATTCTGCACAAAAATTTCTCTAATGTGAAAGACTACTGGAAAATTAATGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACAAAAATTTCTCTAATGTGAAAGACTACTGGAAAATTAATGA  948

seq1  ACTGATGCTCAGAAAGTTTGAGCAGAACTTGCACCTCTTGCATGTCAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCTCAGAAAGTTTGAGCAGAACTTGCACCTCTTGCATGTCAAGT  998

seq1  AACCATGCGAAATTGGGCTTCATCAGCCTCAACTCCCCACTATTAATCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCGAAATTGGGCTTCATCAGCCTCAACTCCCCACTATTAATCAT  1048

seq1  TATATTATAATTCTCACAACAATCAATTTTACCATCACCATTTGGTCGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATAATTCTCACAACAATCAATTTTACCATCACCATTTGGTCGAT  1098

seq1  TCCTTTCCTTCACTTCTTTACATATTTCCTATCCAGGTCCATTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTCACTTCTTTACATATTTCCTATCCAGGTCCATTGAATTC  1147

seq1: chr13_27212561_27213400
seq2: B6Ng01-053I04.g_174_1011

seq1  GGTTTATCTATCTTGCTGATTTTCTCAAAGTACAAGCTCCTGGTTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATCTATCTTGCTGATTTTCTCAAAGTACAAGCTCCTGGTTTGGTT  50

seq1  GATTCTTTGTATAATTCTTTTTGTTTCTACTTGGTTGATTTCAGCCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTGTATAATTCTTTTTGTTTCTACTTGGTTGATTTCAGCCCTGA  100

seq1  GTTTTATTATTTCCTGCCATTTACTCCTCTTGGGTGAATTTGCTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTATTTCCTGCCATTTACTCCTCTTGGGTGAATTTGCTTCCTTT  150

seq1  GGTTCTAGAGCTTTCAGATGTGCTGTCAAACTGCTGGTGTATGCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGAGCTTTCAGATGTGCTGTCAAACTGCTGGTGTATGCTCTCTC  200

seq1  CACTGTCTTTTGGGAGGCAATTGTAGCTATGAGTTTTCCTCTAAGGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTTTTGGGAGGCAATTGTAGCTATGAGTTTTCCTCTAAGGACTG  250

seq1  CTTCCTTTATGTCTCATAAGTTTGGGTGTGTTGTGGCTTCATTTTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTATGTCTCATAAGTTTGGGTGTGTTGTGGCTTCATTTTCATTA  300

seq1  AACTCTAAAAAGTCTTTAATTTTTTTTTTTTAATTTCTTGCTTGACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAAAAGTCTTTAATTTTTTTTTTTTAATTTCTTGCTTGACCAAG  350

seq1  TTATCATTGAGTAGAGTGTTGTTCAGCTTCCATGTGTATGCGGCATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTGAGTAGAGTGTTGTTCAGCTTCCATGTGTATGCGGCATTTCT  400

seq1  ATTATTTATGTTGTTAATCAAAATCAGTCTTAGTCTGTGGTGACCTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATGTTGTTAATCAAAATCAGTCTTAGTCTGTGGTGACCTGATA  450

seq1  GGATTCATGGTTTTATTTTAATATTTTTGTGTCTGTTGAGGGCTTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATGGTTTTATTTTAATATTTTTGTGTCTGTTGAGGGCTTTTACC  500

seq1  TCATTTACTGAGATAAATATTTTGCAGTGTTTCTGGTTAATGGAAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACTGAGATAAATATTTTGCAGTGTTTCTGGTTAATGGAAGAGAT  550

seq1  TTGAGTTTAGTAAAACAGTCTAGAAAAATTGTCTGTTAGAGCTATAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTAGTAAAACAGTCTAGAAAAATTGTCTGTTAGAGCTATAGAGA  600

seq1  GGACAAATGTTTATATAATTATTGATAGCATTGATTATAACCAAAAACAG  650
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGACAAATGTTTATAT-ATTATTGATAGCATTGATTATAACCAAAAACAG  649

seq1  TAGGAAACTTTGCAGAAGACATGGCAGACATAAGATCTTGAATTAAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACTTTGCAGAAGACATGGCAGACATAAGATCTTGAATTAAGGTG  699

seq1  ATGTATAGGAGGAG-AAGTCCTTTCTCCTGCTGGCCAGAAAATGAGTAAT  749
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  ATGTATAGGAGGAGAAATTCCTTTCTCCTGCTGGCCAGAAAATGAGTAAT  749

seq1  CGATCAGTCCAGATGATCTTTCTGA-TTTGGAGAATGACTT-GACCTCTC  797
      ||||||||||||||||||||||||| |||| | |||||||| ||||||||
seq2  CGATCAGTCCAGATGATCTTTCTGATTTTGAAAAATGACTTGGACCTCTC  799

seq1  CAGATCACATGGGGGATATGCAGTATGACAAATATTGACGCAT  840
      |||||||| |||||||| |||| |||||| |||| ||||||||
seq2  CAGATCAC-TGGGGGATTTGCA-TATGAC-AATA-TGACGCAT  838