BAC Information

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BAC

Clone NameB6Ng01-053J01
Chromosome13 (Build37)
Map Location 20,445,112 - 20,566,106
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneStard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J01.bB6Ng01-053J01.g
ACCDH876575DH876576
length1,087346
definitionDH876575|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J01, 5' end.DH876576|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,564,925 - 20,566,106)(20,445,112 - 20,445,465)
sequence
gaattctgcattgtgcccgggcttcctcttgacgtgtatatttttaagtt
tgtggcaggaggtctgcaagggcagtgacctttcctctccctgtgctgat
cttcactgctcattcgcaggactgctctcttgcctgtctgtgatcactaa
acacggcaaatttcatcactggtatcagaaaattaaaccccaaggaacag
cgcactagcacagagcactccagctctggtacggagccagtgcttaaacg
taactttgcaacccccctgggtttccgaggttggagagatgtaacacaga
gccctttcacacatgctttctggctgctaaaatctttctgcccacatctc
aactcatctctgacattgatttgaaaaagcacatttcagtttggacactg
gttcctgaaaaggggcaaggacacgacctagcccggtggcacatttctga
aactgagaacagcagtacatggggaagagatgcttcctcctgtggccagg
atcctgaagagtgacagatcattctaacaacatctctcttctccatgcaa
atgtcagctatacaacctggcagcttcaagctctgtgctcatgccgtttc
ctccttttgaccactccacagggttaattcttactaatgtggttttaaac
acattttctttgtaatgcatcaatacccagggagacaagacacggctcca
ctcctcacactaatcctaactagattgtcaacatccgaatataaattcac
aatcaactacaaatccgaccggaatcaaacaaagcacgaaagcctttttg
aagcagtctcccgtatcatgggaacctttgcatgggtgttcttccatgtg
ctccttccaactcggctttcttggcagacaatagaacaaagctacattct
atctcagcctgcttaataccagtgcacagatgtgtagacaaagatttact
caccaagcttccgtaggttccatcatctctacgacatatactgcgtctta
agctgctgccacaatatgacttagagtcctgcccccagtaggacagtgtg
caggaagaacagagggctggctcaagaagctttgctt
tcatattgatttctagagtggataacttggattatccagagtagctgcac
tgataaccttggtatttgggggcggggggtagagatttatgtggaggttt
cataaatacttcagatgaaccctacagttggtttttgtcgttgttgcttt
ggttttgctttttgattttgccccactaacccaatattttctgagcaaag
gcaattgatttgcccaggagcagtttatcctgctgttaagcagtctcctg
gactcgctactctcttccgtatagctttgctttctatgtctgcgtggtct
tgatcacattgggggccattgataagaacatctcccgctgactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20564925_20566106
seq2: B6Ng01-053J01.b_44_1130 (reverse)

seq1  AAGCAAAGCTCCATGCTTATTCTTCTGGACTTGGAGCGTATTCCATTCGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTGTGCAGCGGGTCTCTGTTCACATGGCTCAACTGGAAACCTGTTTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGC-AAGCTTACTG-GGCAGCCCTCTGGTCTTCCGGCACACTGTCCTA  148
        ||| ||||||  || | |||||||||| |||||| |||||||||||||
seq2  -AAGCAAAGCTTCTTGAGCCAGCCCTCTGTTCTTCCTGCACACTGTCCTA  49

seq1  CT-GGGGCACGACTCTAAGTCATATTTGTGGCAGCAGCTT-AGACGCAGT  196
      || |||||| |||||||||||||| ||||||||||||||| |||||||||
seq2  CTGGGGGCAGGACTCTAAGTCATA-TTGTGGCAGCAGCTTAAGACGCAGT  98

seq1  ATATGTCGTTGGGGATGATGG-ACTTACGGAAGCTTGGTGAGTAAATCTT  245
      |||||||| | | |||||||| || |||||||||||||||||||||||||
seq2  ATATGTCG-TAGAGATGATGGAACCTACGGAAGCTTGGTGAGTAAATCTT  147

seq1  TGTCTTACACATCTGTGCACTGGTATT-AGCAGGCTGAGATAGAATGTAG  294
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTC-TACACATCTGTGCACTGGTATTAAGCAGGCTGAGATAGAATGTAG  196

seq1  CTTTGTTCTATTGTCTGCCAAGAAAGCCGAGTTGGAAGGAGCACATGGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTATTGTCTGCCAAGAAAGCCGAGTTGGAAGGAGCACATGGAA  246

seq1  GAACACCCATGCAAAGGTTCCCATGATACGGGAGACTGCTTC-AAAAGGC  393
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAACACCCATGCAAAGGTTCCCATGATACGGGAGACTGCTTCAAAAAGGC  296

seq1  -TTCCTGCTTTGTTTGATTCCGGTCGGATTTGTAGTTGATTGTGAA-TTA  441
       ||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCGTGCTTTGTTTGATTCCGGTCGGATTTGTAGTTGATTGTGAATTTA  346

seq1  TATTCGGATGTTGACAATCTAGTTAGGATTAGTGTGAGGAGTGGAGCCGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGATGTTGACAATCTAGTTAGGATTAGTGTGAGGAGTGGAGCCGT  396

seq1  GTCTTGTCTCCCTGGGTATTGATGCATTACAAAGAAAATGTGTTTAAAAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTCCCTGGGTATTGATGCATTACAAAGAAAATGTGTTTAAAAC  446

seq1  CACATTAGTAAGAATTAACCCTGTGGAGTGGTCAAAAGGAGGAAACGGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGTAAGAATTAACCCTGTGGAGTGGTCAAAAGGAGGAAACGGCA  496

seq1  TGAGCACAGAGCTTGAAGCTGCCAGGTTGTATAGCTGACATTTGCATGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGAGCTTGAAGCTGCCAGGTTGTATAGCTGACATTTGCATGGA  546

seq1  GAAGAGAGATGTTGTTAGAATGATCTGTCACTCTTCAGGATCCTGGCCAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGATGTTGTTAGAATGATCTGTCACTCTTCAGGATCCTGGCCAC  596

seq1  AGGAGGAAGCATCTCTTCCCCATGTACTGCTGTTCTCAGTTTCAGAAATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGCATCTCTTCCCCATGTACTGCTGTTCTCAGTTTCAGAAATG  646

seq1  TGCCACCGGGCTAGGTCGTGTCCTTGCCCCTTTTCAGGAACCAGTGTCCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCGGGCTAGGTCGTGTCCTTGCCCCTTTTCAGGAACCAGTGTCCA  696

seq1  AACTGAAATGTGCTTTTTCAAATCAATGTCAGAGATGAGTTGAGATGTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAATGTGCTTTTTCAAATCAATGTCAGAGATGAGTTGAGATGTGG  746

seq1  GCAGAAAGATTTTAGCAGCCAGAAAGCATGTGTGAAAGGGCTCTGTGTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGATTTTAGCAGCCAGAAAGCATGTGTGAAAGGGCTCTGTGTTA  796

seq1  CATCTCTCCAACCTCGGAAACCCAGGGGGGTTGCAAAGTTACGTTTAAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAACCTCGGAAACCCAGGGGGGTTGCAAAGTTACGTTTAAGC  846

seq1  ACTGGCTCCGTACCAGAGCTGGAGTGCTCTGTGCTAGTGCGCTGTTCCTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTCCGTACCAGAGCTGGAGTGCTCTGTGCTAGTGCGCTGTTCCTT  896

seq1  GGGGTTTAATTTTCTGATACCAGTGATGAAATTTGCCGTGTTTAGTGATC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTAATTTTCTGATACCAGTGATGAAATTTGCCGTGTTTAGTGATC  946

seq1  ACAGACAGGCAAGAGAGCAGTCCTGCGAATGAGCAGTGAAGATCAGCACA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGCAAGAGAGCAGTCCTGCGAATGAGCAGTGAAGATCAGCACA  996

seq1  GGGAGAGGAAAGGTCACTGCCCTTGCAGACCTCCTGCCACAAACTTAAAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGAAAGGTCACTGCCCTTGCAGACCTCCTGCCACAAACTTAAAA  1046

seq1  ATATACACGTCAAGAGGAAGCCCGGGCACAATGCAGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACGTCAAGAGGAAGCCCGGGCACAATGCAGAATTC  1087

seq1: chr13_20445112_20445465
seq2: B6Ng01-053J01.g_66_417

seq1  GAATTCTCATATTGATTTCTAGAGTGGATAACTTGGATTATCCAGAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATTGATTTCTAGAGTGGATAACTTGGATTATCCAGAGTAG  50

seq1  CTGCACTGATAACCTTGGTATTTGGGGGCGGGGGGTAGAGATTTATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGATAACCTTGGTATTTGGGGGCGGGGGGTAGAGATTTATGTGG  100

seq1  AGGTTTCATCCATACTTCAGATGAACCCTACAGTTGGTTTTTGTTGTTGT  150
      |||||||||  ||||||||||||||||||||||||||||||||| |||||
seq2  AGGTTTCATAAATACTTCAGATGAACCCTACAGTTGGTTTTTGTCGTTGT  150

seq1  TGTTTTGGTTTTGCTTTTTGTTTTTGCCCCACTAACCCAATATTTTCTGA  200
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCTTTGGTTTTGCTTTTTGATTTTGCCCCACTAACCCAATATTTTCTGA  200

seq1  GGAAAGGCAATTGATTTGCCCAGGAGCAGTTTATCCTGCTGTTAAGCAGT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCAATTGATTTGCCCAGGAGCAGTTTATCCTGCTGTTAAGCAGT  250

seq1  CTCCTGGACTCGTTACTCTCTTCCGTTTAGCTTTGCTTTCTATGTCTGCT  300
      |||||||||||| ||||||||||||| |||||||||||||||||||||| 
seq2  CTCCTGGACTCGCTACTCTCTTCCGTATAGCTTTGCTTTCTATGTCTGCG  300

seq1  TGGTACTTGATCACATTGGCGGCCATTGATAAGAATCATCTCCAGCTGAC  350
      |||| |||||||||||||| ||||||||||||||| ||||||| ||||||
seq2  TGGT-CTTGATCACATTGGGGGCCATTGATAAGAA-CATCTCCCGCTGAC  348

seq1  TGAA  354
      ||||
seq2  TGAA  352