BAC Information

Click to search

BAC

Clone NameB6Ng01-053K11
Chromosome13 (Build37)
Map Location 37,282,071 - 37,404,972
singlet/doubletdoublet
Overlap genenone
Upstream geneFars2, LOC666758, Nrn1, F13a1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053K11.bB6Ng01-053K11.g
ACCDH876643DH876644
length1,006804
definitionDH876643|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K11, 5' end.DH876644|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,282,071 - 37,282,746)(37,404,168 - 37,404,972)
sequence
gaattcacattcaaaccatagcaatgaatctgatgaagactctatccatc
ctacaattaaaaaacaaaaggatgaaccattaaaataaactaaagatcta
aatagatgttttcaatggaaataaataagaacagttaataaacacatgaa
aaattcctctaacagctagacattttttaaagtgaataatagccagggag
agaaaccacttcccacttgttggaacatttccatccaaaagacaaacgat
aaatattttgccagtgatatggagaaattattctagaacctgaattcttc
cactgggaacgcacaatggtccagtcatttttagagacacttaagctggt
cttcaagatgctatagctgccacatccagcagtactatttctagccacct
gtgggaaatggagcagaagcctctcaaagatggctaccacacagcctatg
gagactgtggtcagattaaatagcaagatgaatttcgctcctatggtcac
gttcaggatcttgaggtggagagatgagcctggattatctgcttgggtca
caggtcctataaaaaagagaaaaaggagattcaagaggagtttattaggc
aaaggaaggaagaaaagagaacagtggcagaaattaagagacaaacaaga
agcaggcatagtggcacatgcctttaatcccagtactggggaggcagagg
caggcagatttctgagttcgaggccagcctggtctacaaagtgagttcca
ggacaaccagggatacacagagaaactctgtcttgaaaaccaaagagaga
gagagagagagagagagagagagagagagagagagagagagagagaaacg
gaatgggtcctttctcttaaaataggtatcattgtccttgactctagata
aacactgcatcatgctttagtaactgattacgttatggcatctgggtttt
gcagtgggacctatacaattttagataaatgaaaataccggttctcacat
ccctgt
gaattccggagggagaaacacctcggggaggggctgtcaagtgaacaact
tagacggacccaggaaagatcacataaggagtcctgcttcaagactgtca
aagccattgggtcttttaggtttaaattcaattctgcaatggggtgaaat
gtaaggtattagttttaggaaggacccttgcttacttggtgattcacctg
tgaataacagcaaaaccccaaatccgagaaacaatgcatcaggcaatact
agatccgcagccagccagcatcccgcccctcaagaaaaaaattgcagacc
atgacatcattcctctggtctccccacacctgctcgagtccctcgatgat
accaccagatggcgatgttggcctaagttgtagtacattctctagtcctg
ggaaagcctgacctgaatataaaacttccctaatcaccacatttgattcc
ccagcagaacagcacaaaaaaacctactgcggattccaaagaggccaaca
tggcatctcactacattgcgtggtccgcagaccagacatcggtgcatatt
aaagtgtgattgcaagaaaacaactttaaaattcagagtccaggagtggc
cccccgctcccccgcctcccgcgcctagtctcgctttgcgctccctaccc
ccacccacggtccagcaatctcggacgtgaggctttttctgcagccgcag
cggcatggctggcagtgtggcgcggagtggcaagctctagggacccacgc
agcgtctgtctgtgcagtgcccagatggcaggggctggagaggtctccaa
aacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37282071_37282746
seq2: B6Ng01-053K11.b_399_1049

seq1  AGATGCTATAGCTGCCACATCCAGCAGTACTATTTCTAGCCACCTGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTATAGCTGCCACATCCAGCAGTACTATTTCTAGCCACCTGTGGG  50

seq1  AAATGGAGCAGAAGCCTCTCAAAGATGGCTACCACACAGCCTATGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGCAGAAGCCTCTCAAAGATGGCTACCACACAGCCTATGGAGAC  100

seq1  TGTGGTCAGATTAAATAGCAAGATGAATTTCGCTCCTATGGTCACGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAGATTAAATAGCAAGATGAATTTCGCTCCTATGGTCACGTTCA  150

seq1  GGATCTTGAGGTGGAGAGATGAGCCTGGATTATCTGCTTGGGTCACAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGAGGTGGAGAGATGAGCCTGGATTATCTGCTTGGGTCACAGGT  200

seq1  CCTATAAAAAAGAGAAAAAGGAGATTCAAGAGGAGTTTATTAGGCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAAAAGAGAAAAAGGAGATTCAAGAGGAGTTTATTAGGCAAAGG  250

seq1  AAGGAAGAAAAGAGAACAGTGGCAGAAATTAAGAGACAAACAAGAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAAGAGAACAGTGGCAGAAATTAAGAGACAAACAAGAAGCAG  300

seq1  GCATAGTGGCACATGCCTTTAATCCCAGTACTGGGGAGGCAGAGGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGGCACATGCCTTTAATCCCAGTACTGGGGAGGCAGAGGCAGGC  350

seq1  AGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  400

seq1  ACCAGGGATACACAGAGAAACTCTGTCTTGAAAAACCAAAGAGAGAGAGA  450
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCAGGGATACACAGAGAAACTCTGTCTTG-AAAACCAAAGAGAGAGAGA  449

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAC-GGAA  498

seq1  TGGGTCCTTTCCTCTATAAATTAGGTATCATTGTCCTTGACTCTAGATAA  550
      |||||||||| |||| |||| |||||||||||||||||||||||||||||
seq2  TGGGTCCTTT-CTCT-TAAAATAGGTATCATTGTCCTTGACTCTAGATAA  546

seq1  ACAACAGCAGCATTGCTTTAAGTAACTGATTACGTTATGGCATGCTGTTT  600
      || || ||| || |||||| |||||||||||||||||||||||   | ||
seq2  AC-ACTGCATCA-TGCTTT-AGTAACTGATTACGTTATGGCATCTGGGTT  593

seq1  TGGCAGTGGGAAGCTAATACAATATTCAAGATAAATGAAAATACGTGTTC  650
      | |||||||||  |  ||||||| ||  ||||||||||||||||  ||||
seq2  TTGCAGTGGGA--CCTATACAATTTT--AGATAAATGAAAATACCGGTTC  639

seq1  TCACAATCACATGTGCTTGTCCCTGT  676
      |||||              |||||||
seq2  TCACA--------------TCCCTGT  651

seq1: chr13_37404168_37404972
seq2: B6Ng01-053K11.g_68_871 (reverse)

seq1  GGTTTCTGGAGGCCTCTCCAGCCCCTGCCATCTGGGCACTGCACAGACAG  50
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTTT-TGGAGACCTCTCCAGCCCCTGCCATCTGGGCACTGCACAGACAG  49

seq1  ACGCTGCGTGGGTCCCTAGAGCTTGCCACCTCCGCGCCACACTGCCAGCC  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACGCTGCGTGGGTCCCTAGAGCTTGCCA-CTCCGCGCCACACTGCCAGCC  98

seq1  ATGCCGCTGCGGCTGCAG-AAAAGCCTCACGTCCGAGATTGCTGGACCGT  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGCCGCTGCGGCTGCAGAAAAAGCCTCACGTCCGAGATTGCTGGACCGT  148

seq1  GGGTGGGGGTAGGGAGCGCAAAGCGAGACTAGGCGCGGGAGGCGGGGGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTAGGGAGCGCAAAGCGAGACTAGGCGCGGGAGGCGGGGGAG  198

seq1  CGGGGGGCCACTCCTGGACTCTGAATTTTAAAGTTGTTTTCTTGCAATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGGCCACTCCTGGACTCTGAATTTTAAAGTTGTTTTCTTGCAATCA  248

seq1  CACTTTAATATGCACCGATGTCTGGTCTGCGGACCACGCAATGTAGTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAATATGCACCGATGTCTGGTCTGCGGACCACGCAATGTAGTGAG  298

seq1  ATGCCATGTTGGCCTCTTTGGAATCCGCAGTAGGTTTTTTTGTGCTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTTGGCCTCTTTGGAATCCGCAGTAGGTTTTTTTGTGCTGTTC  348

seq1  TGCTGGGGAATCAAATGTGGTGATTAGGGAAGTTTTATATTCAGGTCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAATCAAATGTGGTGATTAGGGAAGTTTTATATTCAGGTCAGG  398

seq1  CTTTCCCAGGACTAGAGAATGTACTACAACTTAGGCCAACATCGCCATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGGACTAGAGAATGTACTACAACTTAGGCCAACATCGCCATCT  448

seq1  GGTGGTATCATCGAGGGACTCGAGCAGGTGTGGGGAGACCAGAGGAATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATCATCGAGGGACTCGAGCAGGTGTGGGGAGACCAGAGGAATGA  498

seq1  TGTCATGGTCTGCAATTTTTTTCTTGAGGGGCGGGATGCTGGCTGGCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGTCTGCAATTTTTTTCTTGAGGGGCGGGATGCTGGCTGGCTGC  548

seq1  GGATCTAGTATTGCCTGATGCATTGTTTCTCGGATTTGGGGTTTTGCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGTATTGCCTGATGCATTGTTTCTCGGATTTGGGGTTTTGCTGT  598

seq1  TATTCACAGGTGAATCACCAAGTAAGCAAGGGTCCTTCCTAAAACTAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGGTGAATCACCAAGTAAGCAAGGGTCCTTCCTAAAACTAATA  648

seq1  CCTTACATTTCACCCCATTGCAGAATTGAATTTAAACCTAAAAGACCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTTCACCCCATTGCAGAATTGAATTTAAACCTAAAAGACCCAA  698

seq1  TGGCTTTGACAGTCTTGAAGCAGGACTCCTTATGTGATCTTTCCTGGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGACAGTCTTGAAGCAGGACTCCTTATGTGATCTTTCCTGGGTC  748

seq1  CGTCTAAGTTGTTCACTTGACAGCCCCTCCCCGAGGTGTTTCTCCCTCCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAAGTTGTTCACTTGACAGCCCCTCCCCGAGGTGTTTCTCCCTCCG  798

seq1  GAATTC  805
      ||||||
seq2  GAATTC  804