BAC Information

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BAC

Clone NameB6Ng01-053O19
Chromosome13 (Build37)13 (Build37)
Map Location 66,722,401 - 66,723,03165,589,663 - 65,590,705
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053O19.bB6Ng01-053O19.g
ACCDH876828DH876829
length9291,034
definitionDH876828|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O19, 5' end.DH876829|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,722,401 - 66,723,031)(65,589,663 - 65,590,705)
sequence
gaattccactttggtaaaatacatgccacatgttttccagtattaattgc
ccatcccccaccccaccccttcctcactataaatttctagatattttctt
agaactaactttcaggtaaaggtctgttctcatgaggcttctctcctgtg
tgtagtctctgatgtcagagatgacctaacagtaaagactttgaacattt
acatttgaaagatcaccctcctgtatgtattctttgatgagttctaagat
gatctttcttggtgaagggtttgtcttatttgcttcatttttagatattc
tctagtgtgtgcattctttgatgagtgtaaaaactacatttaagtctaaa
gaattcatcacattcattacatttataaggtttctctcctgtatgaatta
cctgatgaatactaagactgtgtttgtgggtaaagcgtttgtcacattca
ctaaacttttaaggcttctctcctgtatgaattctctgatgatttctaag
actgcatttgttactaaagcatttgtcacattccctacatttattaggtt
tctctcctgtatgaattctctgatgaattataagatcatatttgtgagtg
aagcatttgtcacattcactacattgataagggttttcccctgtatgaat
tctctgatgaacattaagattatatttttgggtaaagcatttgtcacatt
cactacatttgtaaggtttttctcctgtataaactctgatgaatagtttt
gggtaaagctttttgtcacattcactacattttgtaaggcttcttttcct
gtatgaattatctgatgacttctaggactgtgtttgtcagtacagcattt
tgtcacactcactgcatttataaaggtttctctccagtatgaattctctg
atgatactaagactgtatttgtgcaaaag
gaattcaaggtagaaagcaaccttatcccccagactatggcagtaaggca
ggagcattgaacacagtctcccttcttttagttaacacaagtgcattcat
gtatagtgggtctcacagtcctaatgctacagcactcataaaattcaaag
tatactaatgtaggtggattcacctagagacaaaggaatgtgtcactcct
aagaaatacatgttttcctatggtcttatgtaaccagttagacattcaga
atacctccaaacaagttactatggacaggttgaaaaatactggtctagta
ttaattttatgttacaagtatggagaaatcagtaatgggttcagcttgtt
gtatgagagccgttttctacagagatgcaacacgcatattcatctacctg
tcccaagttgaaactgaaaacaacccattacaacttgttcaaccaatgaa
atttattgcagttacatccaggactatgaggaaggagttggttaccagat
gccaagggactcaaagacagttcctatcctgacacttgaaaccagcatat
gctacagattatgaatacttgacactcagggcaatctgtgtatctgtagg
atactggcatgaagagcattccattttggtggtttagtttatcaatccca
cttttaaaaaatatgggcccggtgtagtggcgcacgcctttaatcccaga
acttaggggaggcagaggcaggtggattttctgagttccagtccagcctg
gtctacaaagtgagttccaggacagccagggctatacagagaaaccctgt
ctcgaaaaacaaaaaataaataaataaaaatatgatttgtctgagtatct
tcattaattaaacataagatgctattggtgtcactctctattttgagggt
atattatccatcataattaagatttctttctgcaatgaattctttcagtc
tcaacaaagaagtaacacattcttctggcttttctactttatcttcatat
gaaaatttgacagtagacaaattgaaaattttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66722401_66723031
seq2: B6Ng01-053O19.b_44_674

seq1  GAATTCCACTTTGGTAAAATACATGCCACATGTTTTCCAGTATTAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTGGTAAAATACATGCCACATGTTTTCCAGTATTAATTGC  50

seq1  CCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTT  100

seq1  AGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGTTTCTCTCCTGTG  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGCTTCTCTCCTGTG  150

seq1  TGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTT  200

seq1  ACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGAT  250

seq1  GATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTC  300

seq1  TCTAGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAA  350

seq1  GAATTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTA  400

seq1  CCTGATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCA  450

seq1  CTAAACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAG  500

seq1  ACTGCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTT  550

seq1  TCTCTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTG  600

seq1  AAGCATTTGTCACATTCACTACATTGATAAG  631
      |||||||||||||||||||||||||||||||
seq2  AAGCATTTGTCACATTCACTACATTGATAAG  631

seq1: chr13_65589663_65590705
seq2: B6Ng01-053O19.g_69_1102 (reverse)

seq1  GGAAAA-TTTCAAATTGTTCACTGTCAAATATTTCATAATGAAGATAAAG  49
      |||||| |||||| ||||  |||||||||| |||||| ||||||||||||
seq2  GGAAAATTTTCAATTTGTCTACTGTCAAAT-TTTCAT-ATGAAGATAAAG  48

seq1  TAGAAAAGCCAGAAGAATGTGTAAC-TCTTTGTTGGAGACTGAAAGAATC  98
      |||||||||||||||||||||| || |||||||| |||||||||||||| 
seq2  TAGAAAAGCCAGAAGAATGTGTTACTTCTTTGTT-GAGACTGAAAGAATT  97

seq1  CATTGCAG-AAGAAATC-TGATTATGATGGATAATCCACCCCTCAAAATA  146
      |||||||| |||||||| | |||||||||||||||  | |||||||||||
seq2  CATTGCAGAAAGAAATCTTAATTATGATGGATAATATA-CCCTCAAAATA  146

seq1  GAGAGTGACACCAATAGCATTCTTTATGTTTAATTTAAATAAAGATACTC  196
      ||||||||||||||||||||   ||||||||||||  ||| |||||||||
seq2  GAGAGTGACACCAATAGCAT--CTTATGTTTAATT--AATGAAGATACTC  192

seq1  AGACAAATCATATTTTTTATTTATTTATTTATTTTTTTGGTTTTTCGAGA  246
      ||||||||||||||     ||||||||||||||||||  |||||||||||
seq2  AGACAAATCATATT-----TTTATTTATTTATTTTTT--GTTTTTCGAGA  235

seq1  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  285

seq1  AGGCTGGACTGGAACTCAG-AAATCCATCTGCCTCTGCCT-CCCTAAGTT  344
      ||||||||||||||||||| ||||||| |||||||||||| |||||||||
seq2  AGGCTGGACTGGAACTCAGAAAATCCACCTGCCTCTGCCTCCCCTAAGTT  335

seq1  CTGGGATTAAAGGCGTGCGCCACTACACCGGGCCCATATTTTTTAAAAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCGTGCGCCACTACACCGGGCCCATATTTTTTAAAAGT  385

seq1  GGGATTGATAAACTAAACCACCAAAATGGAATGCTCTTCATGCCAGTATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGATAAACTAAACCACCAAAATGGAATGCTCTTCATGCCAGTATC  435

seq1  CTACAGATACACAGATTGCCCTGAGTGTCAAGTATTCATAATCTGTAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATACACAGATTGCCCTGAGTGTCAAGTATTCATAATCTGTAGCA  485

seq1  TATGCTGGTTTCAAGTGTCAGGATAGGAACTGTCTTTGAGTCCCTTGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGTTTCAAGTGTCAGGATAGGAACTGTCTTTGAGTCCCTTGGCA  535

seq1  TCTGGTAACCAACTCCTTCCTCATAGTCCTGGATGTAACTGCAATAAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAACCAACTCCTTCCTCATAGTCCTGGATGTAACTGCAATAAATT  585

seq1  TCATTGGTTGAACAAGTTGTAATGGGTTGTTTTCATTTTCAACTTGGGAC  644
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCATTGGTTGAACAAGTTGTAATGGGTTGTTTTCAGTTTCAACTTGGGAC  635

seq1  AGGTAGATGAATATGCGTGTTGCATCTCTGTAGAAAACGGCTCTCATACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATGAATATGCGTGTTGCATCTCTGTAGAAAACGGCTCTCATACA  685

seq1  ACAAGCTGAACCCATTACTGATTTCTCCATACTTGTAACATAAAATTAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGAACCCATTACTGATTTCTCCATACTTGTAACATAAAATTAAT  735

seq1  ACTAGACCAGTATTTTTCAACCTGTCCATAGTAACTTGTTTGGAGGTATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCAGTATTTTTCAACCTGTCCATAGTAACTTGTTTGGAGGTATT  785

seq1  CTGAATGTCTAACTGGTTACATAAGACCATAGGAAAACATGTATTTCTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTCTAACTGGTTACATAAGACCATAGGAAAACATGTATTTCTTA  835

seq1  GGAGTGACACATTCCTTTGTCTCTAGGTGAATCCACCTACATTAGTATAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACACATTCCTTTGTCTCTAGGTGAATCCACCTACATTAGTATAC  885

seq1  TTTGAATTTTATGAGTGCTGTAGCATTAGGACTGTGAGACCCACTATACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTATGAGTGCTGTAGCATTAGGACTGTGAGACCCACTATACA  935

seq1  TGAATGCACTTGTGTTAACTAAAAGAAGGGAGACTGTGTTCAATGCTCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCACTTGTGTTAACTAAAAGAAGGGAGACTGTGTTCAATGCTCCT  985

seq1  GCCTTACTGCCATAGTCTGGGGGATAAGGTTGCTTTCTACCTTGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTGCCATAGTCTGGGGGATAAGGTTGCTTTCTACCTTGAATTC  1034