BAC Information

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BAC

Clone NameB6Ng01-054E12
Chromosome13 (Build37)
Map Location 88,422,920 - 88,562,902
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054E12.bB6Ng01-054E12.g
ACCDH877066DH877067
length1,0981,041
definitionDH877066|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E12, 5' end.DH877067|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,561,782 - 88,562,902)(88,422,920 - 88,423,972)
sequence
gaattcttatcattcttctcttggagtttagatgaagatgaggatgaggt
gaaggtggagagaagaggctcaaaagctccatatgtgctttcataactat
gtctcatttgccacagtgattctagtaactaaggacttgtacatatttct
tagaaaatatttactttctatagatattctttcaaaataaaatattttta
ctttctgaaatcttaaatatttaactctaaatatctgaattgttaatata
ctatctcattcctgacattgttttttggttttgctttttgttttttgttt
tttgttttttttttttttgtttctttttgtattgaaacatcaaaatcttg
ggttaaatcatactcttagtgtttgattacatttttttaatgatgatttt
aaagttgattttgtgttttgcatctatttaaaaggaatactgttctaaaa
tttctttcactattaaactaaacccactttcacctgtccccataaagtta
ctatctttctcagtttcctcctcaaatcatctacatagcagcacttctct
ctcattcctttctattttccaggtttctgaaataacccaagttatggatt
cttattagaagctatcagctaagaccaaaggacatgtattttggtttttt
tgtttgtttgtttgtttttgtttttgtttttgtctttttgggtctatatt
aattaactcagtataatattttctaattcctcccattagcaggaaagttc
attggtttatttttatttatagctgaacagtatcctgtgtacttgtaaga
gtggtgctgatgctaaggtcctgttccttaatagaatcttgatttatcag
taaagatgccatggggcaattgctggacagaaggataggcagtcttctgt
gtccctgctggtgacctggccagatgcagagagaaaagaaagaatagttc
acatgcttcagaaagaaaatgccaccagccatgtgagatcttgtcagagt
gccacaggccacttctacagcagaagttgggatgtagtttgactaaaatt
ctgacaccaaagtcaggacagattagtactgacctagagtgacctaag
gaattctgcttaattgtcatggttgtataatctggtgtgtttatgggacc
actactagtgggaagtgggtctgtctctgacctttttgtttgattttgga
acccattacctcctacagggttaactcactcagccttagtaccagggagg
tgtctagtattattgtaactttgatatgccatgtgtagttgctgtacctt
caagaactgcacttttctggagagaaatggaagaggagtgaatagtgagt
aaaatggatttagcagggataggggactagaaggagagaaaggagggaaa
actgcagtcaggatataataaatgaaaaaaaaatgtatgatgtacgtttt
ccaaatataaaagtatcttaattatgactatgagaaaaatcatactaggc
aattctaatagaatttattcagttgacaagaatttgaatttaggagttga
tatgatgttattttcacaagtattgtataccatgctattcatgcagctat
gtattttatttacctggcttaaaaatatagtcttcggaaagagagtcata
ctatgattttattttactaagttttactaggtaaaggtggcatagtagta
gcaaatacacataaatgaatgatgtctactaaattatataagaacagcaa
atgtttccaagtcaatagctaaatgcagttcactttgttagaaatctccc
ttcttgcattcaccttcactttggcatgtaaaatgcatatgtacaaccat
ttccctgatgatttatttcagtgcctgcaaatcataatattgataatcct
ctagttctcaaagttcagttagtgcatgacttgtaagatactcaaaatgg
aaaatctgtcttttcagtaaaaaacatacatcatgaactcagacacaact
gctggaatgtaataaacaaaatcaaatgtctctagtgtaggattatgggg
taatgtgacaatcttatatgatttgtggtgttatatacctgagaaagaat
ggaaaaaagctagacaagaatagaaatgaaagaccctcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88561782_88562902
seq2: B6Ng01-054E12.b_47_1144 (reverse)

seq1  CTTAGCTCACTCTTAGCTCAGTACCCTAAATCTGTCCTTAACTTTTGTTG  50
      ||||| |||||| ||| |||||||    ||||||||| | ||||| ||  
seq2  CTTAGGTCACTC-TAGGTCAGTAC---TAATCTGTCC-TGACTTTGGT--  43

seq1  TTCAGATATTTTTAGTCAAAACTTAACATTCCCAACTTCCTGCCTGTAGA  100
       ||||  | |||||||| |||||  ||| ||||||||| ||| |||||||
seq2  GTCAG--AATTTTAGTC-AAACT--ACA-TCCCAACTT-CTG-CTGTAGA  85

seq1  AGTGGCCTGTGGCCACTCTGACCAAGATCTCACATGGCTGGTTGGCATTT  150
      |||||||||||| |||||||| ||||||||||||||||||| ||||| ||
seq2  AGTGGCCTGTGG-CACTCTGA-CAAGATCTCACATGGCTGG-TGGCA-TT  131

seq1  TTCTTTCTGAAGCATTGTGAACTATTCTTTCTTTTCTCTCTTGCATCTGG  200
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TTCTTTCTGAAGCA-TGTGAACTATTCTTTCTTTTCTCTC-TGCATCTGG  179

seq1  CCAGGTCACCAGCAGGGACACAGAAGACCTGCCTATTCCTTCTGTCCAGC  250
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CCAGGTCACCAGCAGGGACACAGAAGA-CTGCCTA-TCCTTCTGTCCAGC  227

seq1  AATTGCCCCATGGCATCTTTACTGATAAATCAAGATTCTATTAAGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCCATGGCATCTTTACTGATAAATCAAGATTCTATTAAGGAACA  277

seq1  GGACCTTAGCATCAGCACCACTCTTACAAGTACACAGGATACTGTTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTAGCATCAGCACCACTCTTACAAGTACACAGGATACTGTTCAGC  327

seq1  TATAAATAAAAATAAACCAATGAACTTTCCTGCTAATGGGAGGAATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAAAATAAACCAATGAACTTTCCTGCTAATGGGAGGAATTAGA  377

seq1  AAATATTATACTGAGTTAATTAATATAGACCCAAAAAGACAAAAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATACTGAGTTAATTAATATAGACCCAAAAAGACAAAAACAAAA  427

seq1  ACAAAAACAAACAAACAAACAAAAAAACCAAAATACATGTCCTTTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAACAAACAAACAAAAAAACCAAAATACATGTCCTTTGGTCT  477

seq1  TAGCTGATAGCTTCTAATAAGAATCCATAACTTGGGTTATTTCAGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATAGCTTCTAATAAGAATCCATAACTTGGGTTATTTCAGAAACC  527

seq1  TGGAAAATAGAAAGGAATGAGAGAGAAGTGCTGCTATGTAGATGATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATAGAAAGGAATGAGAGAGAAGTGCTGCTATGTAGATGATTTGA  577

seq1  GGAGGAAACTGAGAAAGATAGTAACTTTATGGGGACAGGTGAAAGTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAACTGAGAAAGATAGTAACTTTATGGGGACAGGTGAAAGTGGGT  627

seq1  TTAGTTTAATAGTGAAAGAAATTTTAGAACAGTATTCCTTTTAAATAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAATAGTGAAAGAAATTTTAGAACAGTATTCCTTTTAAATAGAT  677

seq1  GCAAAACACAAAATCAACTTTAAAATCATCATTAAAAAAATGTAATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACAAAATCAACTTTAAAATCATCATTAAAAAAATGTAATCAAA  727

seq1  CACTAAGAGTATGATTTAACCCAAGATTTTGATGTTTCAATACAAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGAGTATGATTTAACCCAAGATTTTGATGTTTCAATACAAAAAGA  777

seq1  AACAAAAAAAAAAAAAACAAAAAACAAAAAACAAAAAGCAAAACCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAAAAAAAAACAAAAAACAAAAAACAAAAAGCAAAACCAAAAA  827

seq1  ACAATGTCAGGAATGAGATAGTATATTAACAATTCAGATATTTAGAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCAGGAATGAGATAGTATATTAACAATTCAGATATTTAGAGTTA  877

seq1  AATATTTAAGATTTCAGAAAGTAAAAATATTTTATTTTGAAAGAATATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAGATTTCAGAAAGTAAAAATATTTTATTTTGAAAGAATATCT  927

seq1  ATAGAAAGTAAATATTTTCTAAGAAATATGTACAAGTCCTTAGTTACTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTAAATATTTTCTAAGAAATATGTACAAGTCCTTAGTTACTAG  977

seq1  AATCACTGTGGCAAATGAGACATAGTTATGAAAGCACATATGGAGCTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGTGGCAAATGAGACATAGTTATGAAAGCACATATGGAGCTTTT  1027

seq1  GAGCCTCTTCTCTCCACCTTCACCTCATCCTCATCTTCATCTAAACTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTTCTCTCCACCTTCACCTCATCCTCATCTTCATCTAAACTCCA  1077

seq1  AGAGAAGAATGATAAGAATTC  1121
      |||||||||||||||||||||
seq2  AGAGAAGAATGATAAGAATTC  1098

seq1: chr13_88422920_88423972
seq2: B6Ng01-054E12.g_66_1106

seq1  GAATTCTGCTTAATTGTCATGGTTGTATAATCTGGTGTGTTTATGGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTAATTGTCATGGTTGTATAATCTGGTGTGTTTATGGGACC  50

seq1  ACTACTAGTGGGAAGTGGGTCTGTCTCTGACCTTTTTGTTTGATTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAGTGGGAAGTGGGTCTGTCTCTGACCTTTTTGTTTGATTTTGGA  100

seq1  ACCCATTACCTCCTACAGGGTTAACTCACTCAGCCTTAGTACCAGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTACCTCCTACAGGGTTAACTCACTCAGCCTTAGTACCAGGGAGG  150

seq1  TGTCTAGTATTATTGTAACTTTGATATGCCATGTGTAGTTGCTGTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTATTATTGTAACTTTGATATGCCATGTGTAGTTGCTGTACCTT  200

seq1  CAAGAACTGCACTTTTCTGGAGAGAAATGGAAGAGGAGTGAATAGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTGCACTTTTCTGGAGAGAAATGGAAGAGGAGTGAATAGTGAGT  250

seq1  AAAATGGATTTAGCAGGGATAGGGGACTAGAAGGAGAGAAAGGAGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATTTAGCAGGGATAGGGGACTAGAAGGAGAGAAAGGAGGGAAA  300

seq1  ACTGCAGTCAGGATATAATAAATGAAAAAAAAATGTATGATGTACGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTCAGGATATAATAAATGAAAAAAAAATGTATGATGTACGTTTT  350

seq1  CCAAATATAAAAGTATCTTAATTATGACTATGAGAAAAATCATACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATAAAAGTATCTTAATTATGACTATGAGAAAAATCATACTAGGC  400

seq1  AATTCTAATAGAATTTATTCAGTTGACAAGAATTTGAATTTAGGAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATAGAATTTATTCAGTTGACAAGAATTTGAATTTAGGAGTTGA  450

seq1  TATGATGTTATTTTCACAAGTATTGTATACCATGCTATTCATGCAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTTATTTTCACAAGTATTGTATACCATGCTATTCATGCAGCTAT  500

seq1  GTATTTTATTTACCTGGCTTAAAAATATAGTCTTCGGAAAGAGAGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATTTACCTGGCTTAAAAATATAGTCTTCGGAAAGAGAGTCATA  550

seq1  CTATGATTTTATTTTACTAAGTTTTACTAGGTAAAGGTGGCATAGTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTTTATTTTACTAAGTTTTACTAGGTAAAGGTGGCATAGTAGTA  600

seq1  GCAAATACACATAAATGAATGATGTCTACTAAATTATATAAGAACAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACACATAAATGAATGATGTCTACTAAATTATATAAGAACAGCAA  650

seq1  ATGTTTCCAAGTCAATAGCTAAATGCAGTTCACTTTGTTAGAAATCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCAAGTCAATAGCTAAATGCAGTTCACTTTGTTAGAAATCTCCC  700

seq1  TTCTTGCATTCACCTTCACTTTGGCATGTAAAATGCATATGTACAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCATTCACCTTCACTTTGGCATGTAAAATGCATATGTACAACCAT  750

seq1  TTCCCTGATGATTTATTTCAGTGCCTGCAAATCATAATATTGATAATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGATGATTTATTTCAGTGCCTGCAAATCATAATATTGATAATCCT  800

seq1  CTAGTTCTCAAAGTTCAGTTAGTGCATGACTTGTAAGATACTCAAAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCAAAGTTCAGTTAGTGCATGACTTGTAAGATACTCAAAATGG  850

seq1  AAAATCTGTCTTTTCAGTAAAAAACATACATCATGAACTCAGACACAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTCTTTTCAGTAAAAAACATACATCATGAACTCAGACACAACT  900

seq1  GCTGGAATGTAATAAACAAAATCAAATGTCTCCTAGTGTAGGATTATGGG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGGAATGTAATAAACAAAATCAAATGTCT-CTAGTGTAGGATTATGGG  949

seq1  GTAATGTGACAATCTTTAATATGATTTGTGGTGTTATAATACCTTGAAGA  1000
      ||||||||||||||||  ||||||||||||||||||| ||||||   |||
seq2  GTAATGTGACAATCTT--ATATGATTTGTGGTGTTAT-ATACCT--GAGA  994

seq1  AAGAAATGGAAAAAAAGCATAGGACAAAGAATAGATATGAGAAGACACTC  1050
      ||| ||||| |||||||| || ||| ||||||||| |||| ||||| |||
seq2  AAG-AATGG-AAAAAAGC-TA-GAC-AAGAATAGAAATGA-AAGACCCTC  1038

seq1  ATA  1053
      |||
seq2  ATA  1041