BAC Information

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BAC

Clone NameB6Ng01-055P19
Chromosome13 (Build37)
Map Location 45,250,230 - 45,347,970
singlet/doubletdoublet
Overlap geneLOC100039502, LOC667204, LOC100039533
Upstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1
Downstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055P19.bB6Ng01-055P19.g
ACCDH878286DH878287
length708666
definitionDH878286|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P19, 5' end.DH878287|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,250,230 - 45,250,936)(45,347,305 - 45,347,970)
sequence
gaattcccttttccacccatgaattacccctcattacccatcagacttac
tcttgaaaaacaaagattgtgtgtatagattctcttgagtcccactcctg
tctttctatttagatgcccacaaaagctttgggttttctaagtgtgcagg
ccacagagataatactttcttggtggtagtgcattctcatgcaaagatgt
aaagatgtgcttgtgtctgaaggcactagaacatattagtcaggattctc
ttgcacatatatgttcttatttgtcaactggaagccctggaactcagtct
gtttggatttatacgagggctttactatataggtatagttgactaaatca
ttctgttggcgaccaacttgacctttccgatctagctgactccatttcct
tcagtctttttctaccgtatcaattctctttcctctttttgattggatat
atgcttacccccatccacccccttggcctggatgacttagaatgatggtt
tagcctcctgttcattcacaatatgacttggttggtttcttgtaactgtt
gtgttttataaaaagataagagaggccaggaatatgtttggtgtaggcat
ggtaaggtgtgggggaggaggatgcctctgcaggtaccagtcacagacag
tatagtatagaatagagttttattcaggacatgaaaggggagttgagaga
gagagaga
gaattccccagaaggcctatcctcttcacctaaaagacttgttctatagc
ctgatttgaagtttcctggacgtggcatggaaacgaaggcctccacattg
ggtcaggacatctgcaggcagataacttgactaaaagtcctttttttttc
agttccagaaagagagctaaagtcagctgaccttctgctgctgctgacag
ctttttcacacctacaaaggcacacagcagggtgagcacactgacctttc
ccctgctatgtccctgacatgtttactttggtcaatcattctccatcttg
gctaatagtggcttagaaatcagccgtaagaagagccaaacaccaggcca
cccttcctaagtttgtccaaccttttgacatggaaaaatggcatgatcat
ctgcagagtccacactcaagaactcagcaattgagtttcccctccaccgc
aaaaataactaaaaaccaaaacaagaacaacaaacccactacgctatgtc
aggtttacaatattgtcttgggtcatattcacagctatcctaagctgcgt
gcaagagactagtctggctagactctggggagtgagaattgagtaggggt
gttttcatttttcttttttaaaaattgcatttgtaagtgtgtgtgtgtgt
gtgtaaagggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45250230_45250936
seq2: B6Ng01-055P19.b_49_756

seq1  GAATTCCCTTTTCCACCCATGAATTACCCCTCATTACCCATCAGACTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTTCCACCCATGAATTACCCCTCATTACCCATCAGACTTAC  50

seq1  TCTTGAAAAACAAAGATTGTGTGTATAGATTCTCTTGAGTCCCACTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAACAAAGATTGTGTGTATAGATTCTCTTGAGTCCCACTCCTG  100

seq1  TCTTTCTATTTAGATGCCCACAAAAGCTTTGGGTTTTCTAAGTGTGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATTTAGATGCCCACAAAAGCTTTGGGTTTTCTAAGTGTGCAGG  150

seq1  CCACAGAGATAATACTTTCTTGGTGGTAGTGCATTCTCATGCAAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGATAATACTTTCTTGGTGGTAGTGCATTCTCATGCAAAGATGT  200

seq1  AAAGATGTGCTTGTGTCTGAAGGCACTAGAACATATTAGTCAGGATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTGCTTGTGTCTGAAGGCACTAGAACATATTAGTCAGGATTCTC  250

seq1  TTGCACATATATGTTCTTATTTGTCAACTGGAAGCCCTGGAACTCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATATATGTTCTTATTTGTCAACTGGAAGCCCTGGAACTCAGTCT  300

seq1  GTTTGGATTTATACGAGGGCTTTACTATATAGGTATAGTTGACTAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATTTATACGAGGGCTTTACTATATAGGTATAGTTGACTAAATCA  350

seq1  TTCTGTTGGCGACCAACTTGACCTTTCCGATCTAGCTGACTCCATTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGGCGACCAACTTGACCTTTCCGATCTAGCTGACTCCATTTCCT  400

seq1  TCAGTCTTTTTCTACCGTATCAATTCTCTTTCCTCTTTTTGATTGGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTTTCTACCGTATCAATTCTCTTTCCTCTTTTTGATTGGATAT  450

seq1  ATGCTTACCCCCATCCACCCCCTTGGCCTGGATGACTTAGAATGATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACCCCCATCCACCCCCTTGGCCTGGATGACTTAGAATGATGGTT  500

seq1  TAGCCTCCTGTTCATTCACAATATGACTTGGTTGGTTTCTTGTAACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCTGTTCATTCACAATATGACTTGGTTGGTTTCTTGTAACTGTT  550

seq1  GTGTTTTATAAAAAGATAAGAGAGGCCAGGAATATGTTTGGTGTAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTATAAAAAGATAAGAGAGGCCAGGAATATGTTTGGTGTAGGCAT  600

seq1  GGTAAGGTGTGGGGGAGGAGGATGCCTCTGCAGGTACCAGTCACAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTGTGGGGGAGGAGGATGCCTCTGCAGGTACCAGTCACAGACAG  650

seq1  TATAGTATAGAATAGAG-TTTATTCAGGACATGAAAGGGGAGTTGAGAGA  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATAGTATAGAATAGAGTTTTATTCAGGACATGAAAGGGGAGTTGAGAGA  700

seq1  GAGAGAGA  707
      ||||||||
seq2  GAGAGAGA  708

seq1: chr13_45347305_45347970
seq2: B6Ng01-055P19.g_67_732 (reverse)

seq1  TCCCCCCCCTTTACACACACACACACACACTTACAAATGCAATTTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCTTTACACACACACACACACACTTACAAATGCAATTTTTAAA  50

seq1  AAAGAAAAATGAAAACACCCCTACTCAATTCTCACTCCCCAGAGTCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATGAAAACACCCCTACTCAATTCTCACTCCCCAGAGTCTAGC  100

seq1  CAGACTAGTCTCTTGCACGCAGCTTAGGATAGCTGTGAATATGACCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGTCTCTTGCACGCAGCTTAGGATAGCTGTGAATATGACCCAAG  150

seq1  ACAATATTGTAAACCTGACATAGCGTAGTGGGTTTGTTGTTCTTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTGTAAACCTGACATAGCGTAGTGGGTTTGTTGTTCTTGTTTTG  200

seq1  GTTTTTAGTTATTTTTGCGGTGGAGGGGAAACTCAATTGCTGAGTTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTTATTTTTGCGGTGGAGGGGAAACTCAATTGCTGAGTTCTTG  250

seq1  AGTGTGGACTCTGCAGATGATCATGCCATTTTTCCATGTCAAAAGGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGACTCTGCAGATGATCATGCCATTTTTCCATGTCAAAAGGTTGG  300

seq1  ACAAACTTAGGAAGGGTGGCCTGGTGTTTGGCTCTTCTTACGGCTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTAGGAAGGGTGGCCTGGTGTTTGGCTCTTCTTACGGCTGATTT  350

seq1  CTAAGCCACTATTAGCCAAGATGGAGAATGATTGACCAAAGTAAACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCACTATTAGCCAAGATGGAGAATGATTGACCAAAGTAAACATGT  400

seq1  CAGGGACATAGCAGGGGAAAGGTCAGTGTGCTCACCCTGCTGTGTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACATAGCAGGGGAAAGGTCAGTGTGCTCACCCTGCTGTGTGCCTT  450

seq1  TGTAGGTGTGAAAAAGCTGTCAGCAGCAGCAGAAGGTCAGCTGACTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGTGAAAAAGCTGTCAGCAGCAGCAGAAGGTCAGCTGACTTTAG  500

seq1  CTCTCTTTCTGGAACTGAAAAAAAAAGGACTTTTAGTCAAGTTATCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTGGAACTGAAAAAAAAAGGACTTTTAGTCAAGTTATCTGCC  550

seq1  TGCAGATGTCCTGACCCAATGTGGAGGCCTTCGTTTCCATGCCACGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGTCCTGACCCAATGTGGAGGCCTTCGTTTCCATGCCACGTCCA  600

seq1  GGAAACTTCAAATCAGGCTATAGAACAAGTCTTTTAGGTGAAGAGGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTCAAATCAGGCTATAGAACAAGTCTTTTAGGTGAAGAGGATAG  650

seq1  GCCTTCTGGGGAATTC  666
      ||||||||||||||||
seq2  GCCTTCTGGGGAATTC  666