BAC Information

Click to search

BAC

Clone NameB6Ng01-056B09
Chromosome13 (Build37)
Map Location 68,572,457 - 68,720,950
singlet/doubletdoublet
Overlap geneLOC100042223, Mtrr, LOC100042233
Upstream gene9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
Downstream geneFastkd3, 1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B09.bB6Ng01-056B09.g
ACCDH878356DH878357
length1,1271,039
definitionDH878356|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B09, 5' end.DH878357|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,572,457 - 68,573,594)(68,719,890 - 68,720,950)
sequence
gaattccagacacaaatgacaggcagtgtcaggcttccaggggtaattta
gtagcacatcgaggctaagtgggctcacacagaaattcatgctgggttct
tttattttaaaactgctcctccagtattactgtcttcccattaaagagcc
ttaaatctggtgaaatgggcctcattgctcctcctcccacacctgtattc
aggattatatgagaggaaacccgtaaagtcagtcctccttacacaactga
aatatgctcctgcctttcctagtggctggataataaaatatctccctctg
cttaggaactagcatttcaacatgaaaagaaaaccaaatttatagactac
agtatttttggctcacaaccagctctgtgccagaccacccactggtaaga
acagtaacctaatgaaattactgttgtaaattataactacttatcaacac
tgttagagccacattctgtgatgcatttcactttcttttatttttatttt
tttctgctagcttgggatggagaggattgagtaaacagaatccaagataa
ccagattactttttacttatctttcccataggggttctcttagcctcacc
agcaacacctcaactggctaaaatgtacaggtctgtgaggtaacttacct
cagaaatggagactcagaattctgctgtcatcttggtgttagctcctcat
ctggtgaaaggtgggatgataaactccacccatctgtcccttaccaagga
ttctgtctctgaatgtttccaacagctctgtcttagggttttactgctat
gaacaggcaccacgaccaaggcactcttatttttttaaaaagattattta
ttaattatatataagtacactgtagctgtcttcagacgcaccagaagagg
tcatcagatctcattacaggtggttgtgagccaccatgtggttgctggga
tttgaacttcggaccttcggagagagtcgggtgctcttactcactgagcc
acctcacagctccagggaaactcttataggacaacatttaatttggggct
ggcttacaggttcagagtttcagtcatatcaaggctgaaccttgcagcat
tcagcagctgattgcaggaggagtaga
cgcctggaggtattcggcgggggacggcgggagcgacggaagcggtgggg
gagccgggactcgcgcctgcgcagtggggatgagccgctgagttttccgg
accgcggtggggttcacggggagcacttgggaggcggaccgcggtggggt
tcacggggagcacttgggaggagtcggctccgccacctttcccaaaacct
cgtgagctcgcacgtgtcacccattggtcctgtcgagtctgtggcagtgc
ttcccgatgaacctttgaagggtttgtgtcctagctccccagcggataag
ccacaagtgcttagaaactaactagagttgattcactcaggaaaagataa
ttttatataggccggctaccactcagcgttagccactggatagaatggcg
gagtgtggaatcccagagccctttatcttctttttctcttggttatctcc
ggggtaaggcatgaattagaaataccgtctctgtgtaaagtccatgtacg
ctgactactgatagatgcaatgatgccatctttgatgacgaccagtgctt
tgattaggatctagcaggaaacacgaactccccagtttcacgtgaacatt
gtacagttacagttttggttttttaaagattacttatttattttatatat
atgagtatactgtggctgtactgatggttgtgaaccatcatgtcgtttct
gggactttgaattcagaacctttacttgctccggaggatcctgctcgctc
cagcctaaaggtttatttattattatatgtaagtacactgtagctgtctt
cagaggcaccagaagagggcgtcagatcttattaagggatggttgtgagc
taccatgtgattgctgggatttgaactcagaatcttgggaaagcatcatg
gtctcttaactgtggagtacagttgtttttgttttgttttgttttgtttt
ttttgcttgttaaacgcagaacaatactcttgtagcgacacttggtttga
gctggcttagccccttccctttcagctttggatcctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68572457_68573594
seq2: B6Ng01-056B09.b_48_1174

seq1  GAATTCCAGACACAAATGACAGGCAGTGTCAGGCTTCCAGGGGTAATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACACAAATGACAGGCAGTGTCAGGCTTCCAGGGGTAATTTA  50

seq1  GTAGCACATCGAGGCTAAGTGGGCTCACACAGAAATTCATGCTGGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACATCGAGGCTAAGTGGGCTCACACAGAAATTCATGCTGGGTTCT  100

seq1  TTTATTTTAAAACTGCTCCTCCAGTATTACTGTCTTCCCATTAAAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAAACTGCTCCTCCAGTATTACTGTCTTCCCATTAAAGAGCC  150

seq1  TTAAATCTGGTGAAATGGGCCTCATTGCTCCTCCTCCCACACCTGTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTGGTGAAATGGGCCTCATTGCTCCTCCTCCCACACCTGTATTC  200

seq1  AGGATTATATGAGAGGAAACCCGTAAAGTCAGTCCTCCTTACACAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATATGAGAGGAAACCCGTAAAGTCAGTCCTCCTTACACAACTGA  250

seq1  AATATGCTCCTGCCTTTCCTAGTGGCTGGATAATAAAATATCTCCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTCCTGCCTTTCCTAGTGGCTGGATAATAAAATATCTCCCTCTG  300

seq1  CTTAGGAACTAGCATTTCAACATGAAAAGAAAACCAAATTTATAGACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAACTAGCATTTCAACATGAAAAGAAAACCAAATTTATAGACTAC  350

seq1  AGTATTTTTGGCTCACAACCAGCTCTGTGCCAGACCACCCACTGGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTGGCTCACAACCAGCTCTGTGCCAGACCACCCACTGGTAAGA  400

seq1  ACAGTAACCTAATGAAATTACTGTTGTAAATTATAACTACTTATCAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACCTAATGAAATTACTGTTGTAAATTATAACTACTTATCAACAC  450

seq1  TGTTAGAGCCACATTCTGTGATGCATTTCACTTTCTTTTATTTTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGCCACATTCTGTGATGCATTTCACTTTCTTTTATTTTTATTTT  500

seq1  TTTCTGCTAGCTTGGGATGGAGAGGATTGAGTAAACAGAATCCAAGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTAGCTTGGGATGGAGAGGATTGAGTAAACAGAATCCAAGATAA  550

seq1  CCAGATTACTTTTTACTTATCTTTCCCATAGGGGTTCTCTTAGCCTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTACTTTTTACTTATCTTTCCCATAGGGGTTCTCTTAGCCTCACC  600

seq1  AGCAACACCTCAACTGGCTAAAATGTACAGGTCTGTGAGGTAACTTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACCTCAACTGGCTAAAATGTACAGGTCTGTGAGGTAACTTACCT  650

seq1  CAGAAATGGAGACTCAGAATTCTGCTGTCATCTTGGTGTTAGCTCCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGAGACTCAGAATTCTGCTGTCATCTTGGTGTTAGCTCCTCAT  700

seq1  CTGGTGAAAGGTGGGATGATAAACTCCACCCATCTGTCCCTTACCAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAAGGTGGGATGATAAACTCCACCCATCTGTCCCTTACCAAGGA  750

seq1  TTCTGTCTCTGAATGTTTCCAACAGCTCTGTCTTAGGGTTTTACTGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTCTGAATGTTTCCAACAGCTCTGTCTTAGGGTTTTACTGCTAT  800

seq1  GAACAGGCACCACGACCAAGGCAACTCTTATTTTTTTAAAAAAGATTTAT  850
      |||||||||||||||||||||| |||||||||||||| ||||||| ||||
seq2  GAACAGGCACCACGACCAAGGC-ACTCTTATTTTTTT-AAAAAGA-TTAT  847

seq1  TTATTAATTATATATAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTATATATAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAG  897

seq1  AGGTCATCAGATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCAGATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTG  947

seq1  GGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACT  1000
      ||||||||||||||||||||||| |||| |||||||||||||||| ||||
seq2  GGATTTGAACTTCGGACCTTCGG-AGAG-AGTCGGGTGCTCTTACTCACT  995

seq1  GAGCCACCTCACCAGCCCCAAGGAAACTCTTATAAGGACAACATTTAA-T  1049
      ||||||||||| |||| ||| |||||||||||| |||||||||||||| |
seq2  GAGCCACCTCA-CAGCTCCAGGGAAACTCTTAT-AGGACAACATTTAATT  1043

seq1  TGGGGCTGGCTTACAGGTTCAGAGTTTCAGTCCATTATCAAGGCCAGAAG  1099
      ||||||||||||||||||||||||||||||||   |||||||| | ||| 
seq2  TGGGGCTGGCTTACAGGTTCAGAGTTTCAGTC--ATATCAAGG-CTGAA-  1089

seq1  CATGGCAGCATCCAGGCAGCATGA-TGCAGGAGGAGTAGA  1138
      | | ||||||| || ||||| ||| |||||||||||||||
seq2  CCTTGCAGCATTCA-GCAGC-TGATTGCAGGAGGAGTAGA  1127

seq1: chr13_68719890_68720950
seq2: B6Ng01-056B09.g_76_1114 (reverse)

seq1  ATTAGGATCATAAGCCTGAATGGTGAAGGGGCTAAGCCATGCTCAAACAC  50
      |||||||||  ||| ||||| || ||||||||||||||| ||||||||  
seq2  ATTAGGATCCAAAG-CTGAAAGG-GAAGGGGCTAAGCCA-GCTCAAACCA  47

seq1  AGTGTCGCTTACAAAGGCTATTGTTTCTGCCGTTTAAAAACAAAGCAAAA  100
      |||||||| ||| |||  ||||| ||||| |||||||     ||||||||
seq2  AGTGTCGC-TAC-AAGAGTATTG-TTCTG-CGTTTAA----CAAGCAAAA  89

seq1  AAAAAACAAAAAACAAAAACAAAAAACAAAAACAAACTGTAACTCAGCAG  150
      |||    | ||||||||   | ||||||||||| |||||| ||||  |||
seq2  AAA----ACAAAACAAA---ACAAAACAAAAAC-AACTGT-ACTCCACAG  130

seq1  TTAAGAGACCACTGACTGCTCTTCCCAAGGTTCTGAGTTCAAATCCCAGC  200
      ||||||||||| ||| |||| |||||||| ||||||||||||||||||||
seq2  TTAAGAGACCA-TGA-TGCT-TTCCCAAGATTCTGAGTTCAAATCCCAGC  177

seq1  AATCACATGGTAGCTCACAACCATCCC-TAATGAGATCTGACGCCCTCTT  249
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  AATCACATGGTAGCTCACAACCATCCCTTAATAAGATCTGACGCCCTCTT  227

seq1  CTGGTGCCTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAA  277

seq1  ACCTTTAGGCTGGAGCGAGCAGGATCCTCCGGAGCAAGTAAAGGTTCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGGCTGGAGCGAGCAGGATCCTCCGGAGCAAGTAAAGGTTCTGA  327

seq1  ATTCAAAGTCCCAGAAACGACATGATGGTTCACAACCATCAGTACAGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGTCCCAGAAACGACATGATGGTTCACAACCATCAGTACAGCCA  377

seq1  CAGTATACTCATATATATAAAATAAATAAGTAATCTTTAAAAAACCAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACTCATATATATAAAATAAATAAGTAATCTTTAAAAAACCAAAA  427

seq1  CTGTAACTGTACAATGTTCACGTGAAACTGGGGAGTTCGTGTTTCCTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTGTACAATGTTCACGTGAAACTGGGGAGTTCGTGTTTCCTGCT  477

seq1  AGATCCTAATCAAAGCACTGGTCGTCATCAAAGATGGCATCATTGCATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTAATCAAAGCACTGGTCGTCATCAAAGATGGCATCATTGCATCT  527

seq1  ATCAGTAGTCAGCGTACATGGACTTTACACAGAGACGGTATTTCTAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAGTCAGCGTACATGGACTTTACACAGAGACGGTATTTCTAATTC  577

seq1  ATGCCTTACCCCGGAGATAACCAAGAGAAAAAGAAGATAAAGGGCTCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTACCCCGGAGATAACCAAGAGAAAAAGAAGATAAAGGGCTCTGG  627

seq1  GATTCCACACTCCGCCATTCTATCCAGTGGCTAACGCTGAGTGGTAGCCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCACACTCCGCCATTCTATCCAGTGGCTAACGCTGAGTGGTAGCCG  677

seq1  GCCTATATAAAATTATCTTTTCCTGAGTGAATCAACTCTAGTTAGTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATATAAAATTATCTTTTCCTGAGTGAATCAACTCTAGTTAGTTTCT  727

seq1  AAGCACTTGTGGCTTATCCGCTGGGGAGCTAGGACACAAACCCTTCAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTGTGGCTTATCCGCTGGGGAGCTAGGACACAAACCCTTCAAAG  777

seq1  GTTCATCGGGAAGCACTGCCACAGACTCGACAGGACCAATGGGTGACACG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCGGGAAGCACTGCCACAGACTCGACAGGACCAATGGGTGACACG  827

seq1  TGCGAGCTCACGAGGTTTTGGGAAAGGTGGCGGAGCCGACTCCTCCCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGCTCACGAGGTTTTGGGAAAGGTGGCGGAGCCGACTCCTCCCAAG  877

seq1  TGCTCCCCGTGAACCCCACCGCGGTCCGCCTCCCAAGTGCTCCCCGTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCGTGAACCCCACCGCGGTCCGCCTCCCAAGTGCTCCCCGTGAA  927

seq1  CCCCACCGCGGTCCGGAAAACTCAGCGGCTCATCCCCACTGCGCAGGCGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCGCGGTCCGGAAAACTCAGCGGCTCATCCCCACTGCGCAGGCGC  977

seq1  GAGTCCCGGCTCCCCCACCGCTTCCGTCGCTCCCGCCGTCCCCCGCCGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCGGCTCCCCCACCGCTTCCGTCGCTCCCGCCGTCCCCCGCCGAA  1027

seq1  TACCTCCAGGCG  1061
      ||||||||||||
seq2  TACCTCCAGGCG  1039