BAC Information

Click to search

BAC

Clone NameB6Ng01-057E15
Chromosome13 (Build37)
Map Location 91,720,504 - 91,877,159
singlet/doubletdoublet
Overlap geneSsbp2
Upstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959, LOC666889
Downstream geneAcot12, Zcchc9, Ckmt2, Rasgrf2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057E15.bB6Ng01-057E15.g
ACCDH879202DH879203
length931912
definitionDH879202|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E15, 5' end.DH879203|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,720,504 - 91,721,429)(91,876,249 - 91,877,159)
sequence
gaattctccagttagttcagactcagtctttaacagctgaaacttttagt
ttgagtgcttctcaacagcttgactccttctcgaagctcgttcacaccat
caaaggtgcattgtatgtcctgtctccccttgcaggcatctgccttgcct
tacaactaattctctgacaagtttggaacatttgagttgttttagaaata
ttcctttggtagttattgcaggcttcaggttctcacatccaagtgagtct
gtcacgctgtgccttttgttgcccattacacctgccaggctgtgcatgtg
acctaggtccacagttcctacttaccgttctttctgataaatcattttaa
aaatttggtgaaaatttgtttcatgaaatttgttttatgagacacatatt
atgaaatttgttttatgagacacatattaaaaataccacaccgatgagga
aaggcagcccctaatttttgttgcttgagactgaacccaggacttcatgc
atgctaagtccatgctagcattgaattaccaggcagctggtgtcagttct
tcttttattctagattcaccacccatctacagacctccctcctatgttct
tagaaagaccttcattcttaaggttgctgtaagccatgggtggcatatgt
agaaagtatctttgaagaacaggactccaaacaaatgatgacttaactat
gttttgtttttttactttttatacctatgagcacatttatttgtaccaag
atttagtggatggcctataatgacttcctgttttaatttattcaaagatt
tcctattactacttctagtactactgctgctactactactgccttaaagt
ccttggtaaagactgagttgttttgttttggtttgggttttctgtcactt
ttttttcctttttttttttaatcgaagagaa
gaattctaatgggtcatgacacaatttttttcaggtattgctgatttctg
tctcattatgttttcttaaagaattttgcatctatactgttgagagctat
tagtctgttatcttttctctttagttctccttttcttcatcagtctcttc
ttccttgttatcttatttcttcccccctcctctgcctccccttctaccct
acatcctcccctgtcctgtttttgttactggttttattttgtttttcaag
gtagagtgcatgtatccctggatggcctgataatctctagaggccataat
caaacttgtagcaatcctcctgcctcagtttcccaagtattgtgtttaca
gagatgtcacctcaaccatttttttctattctctttttagaactgccttt
ttctggtttggttttcggtctaggaagtgttctctggattctgcaactag
aaacgtgctttaaaagtctagaattctccaggaaagttcttggaactata
ggggtttcttttgaggaatttttaaattatggatttattttttaaatagt
tattaagctactaaagtaacctacctcttatggtcatttcttgttttaga
aaattgttgctattcatctgtgattttgccacaggcagaggtgagctggt
gtttttctcttgttgtccaacaccctgccagctctgctaagccccacttg
agctgtccctcctgactctttagtttcaccacaggactccatctcctgcc
cacagtgttcccttgcctttccaaactggttctgccctttgcagactcag
tgggtcaggagctctaggtggaaacaaccatctagagcttacgaacctac
catatgactgttgggcactaaagcttgttaccactgttgtaagagtgttt
catcaaagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_91720504_91721429
seq2: B6Ng01-057E15.b_45_963

seq1  GAATTCTCCAGTTAGTTCAGACTCAGTCTTTAACAGCTGAAACTTTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTTAGTTCAGACTCAGTCTTTAACAGCTGAAACTTTTAGT  50

seq1  TTGAGTGCTTCTCAACAGCTTGACTCCTTCTCGAAGCTCGTTCACACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGCTTCTCAACAGCTTGACTCCTTCTCGAAGCTCGTTCACACCAT  100

seq1  CAAAGGTGCATTGTATGTCCTGTCTCCCCTTGCAGGCATCTGCCTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGCATTGTATGTCCTGTCTCCCCTTGCAGGCATCTGCCTTGCCT  150

seq1  TACAACTAATTCTCTGACAAGTTTGGAACATTTGAGTTGTTTTAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAATTCTCTGACAAGTTTGGAACATTTGAGTTGTTTTAGAAATA  200

seq1  TTCCTTTGGTAGTTATTGCAGGCTTCAGGTTCTCACATCCAAGTGAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGTAGTTATTGCAGGCTTCAGGTTCTCACATCCAAGTGAGTCT  250

seq1  GTCACGCTGTGCCTTTTGTTGCCCATTACACCTGCCAGGCTGTGCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGCTGTGCCTTTTGTTGCCCATTACACCTGCCAGGCTGTGCATGTG  300

seq1  ACCTAGGTCCACAGTTCCTACTTACCGTTCTTTCTGATAAATCATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTCCACAGTTCCTACTTACCGTTCTTTCTGATAAATCATTTTAA  350

seq1  AAATTTGGTGAAAATTTGTTTCATGAAATTTGTTTTATGAGACACATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGTGAAAATTTGTTTCATGAAATTTGTTTTATGAGACACATATT  400

seq1  ATGAAATTTGTTTTATGAGACACATATTAAAAATACCACACCGATGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTGTTTTATGAGACACATATTAAAAATACCACACCGATGAGGA  450

seq1  AAGGCAGCCCCTAATTTTTGTTGCTTGAGACTGAACCCAGGACTTCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCCCCTAATTTTTGTTGCTTGAGACTGAACCCAGGACTTCATGC  500

seq1  ATGCTAAGTCCATGCTAGCATTGAATTACCAGGCAGCTGGTGTCAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGTCCATGCTAGCATTGAATTACCAGGCAGCTGGTGTCAGTTCT  550

seq1  TCTTTTATTCTAGATTCACCACCCATCTACAGACCTCCCTCCTATGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTCTAGATTCACCACCCATCTACAGACCTCCCTCCTATGTTCT  600

seq1  TAGAAAGACCTTCATTCTTAAGGTTGCTGTAAGCCATGGGTGGCATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGACCTTCATTCTTAAGGTTGCTGTAAGCCATGGGTGGCATATGT  650

seq1  AGAAAGTATCTTTGAAGAACAGGACTCCAAACAAATGATGACTTAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATCTTTGAAGAACAGGACTCCAAACAAATGATGACTTAACTAT  700

seq1  GTTTTGTTTTTTTACTTTTTATACCTATGAGCACATTTATTTGTACCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTACTTTTTATACCTATGAGCACATTTATTTGTACCAAG  750

seq1  ATTTAGGTGGATGGCCTATAATGACTTCCTGTTTTCAATTTATTCAAAGA  800
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTA-GTGGATGGCCTATAATGACTTCCTGTTTT-AATTTATTCAAAGA  798

seq1  TTTCCTATTACTACTTCTAGTACTACTGCTGCTACTACTACTGCCTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTACTACTTCTAGTACTACTGCTGCTACTACTACTGCCTTAAA  848

seq1  GTCCTTGGTAAAGACTTGAGTTGTTTTTGTTTTGGTTTGGTTTTTCTTGT  900
      ||||||||||||||| ||||||| |||||||||||||||| ||||| |||
seq2  GTCCTTGGTAAAGAC-TGAGTTG-TTTTGTTTTGGTTTGGGTTTTC-TGT  895

seq1  CTACTTTTTTTTTTCTTTTTTTTTTT  926
      | || |||||||| ||||||||||||
seq2  C-AC-TTTTTTTTCCTTTTTTTTTTT  919

seq1: chr13_91876249_91877159
seq2: B6Ng01-057E15.g_70_981 (reverse)

seq1  ATCCCTTTGATGAAACACCTCTTACAACAGTGGTACCAAGCTTTAGTGCC  50
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  ATCCCTTTGATGAAACA-CTCTTACAACAGTGGTAACAAGCTTTAGTGCC  49

seq1  CAACAGTCATATGGTAGGTTCGTAAGCTCTAGATGGTTGTTTCCACCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCATATGGTAGGTTCGTAAGCTCTAGATGGTTGTTTCCACCTAG  99

seq1  AGCTCCTGACCCACTGAGTCTGCAAAGGGCAGAACCAGTTTGG-AAGGCA  149
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCTCCTGACCCACTGAGTCTGCAAAGGGCAGAACCAGTTTGGAAAGGCA  149

seq1  AGGGAACACTGTGGGCAGGAGATGGAGTCCTGTGGTGAAACTAAAGAGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACACTGTGGGCAGGAGATGGAGTCCTGTGGTGAAACTAAAGAGTC  199

seq1  AGGAGGGACAGCTCAAGTGGGGCTTAGCAGAGCTGGCAGGGTGTTGGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGACAGCTCAAGTGGGGCTTAGCAGAGCTGGCAGGGTGTTGGACA  249

seq1  ACAAGAGAAAAACACCAGCTCACCTCTGCCTGTGGC-AAATCACAGATGA  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAAGAGAAAAACACCAGCTCACCTCTGCCTGTGGCAAAATCACAGATGA  299

seq1  ATAGCAACAATTTTCTAAAACAAGAAATGACCATAAGAGGTAGGTTACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACAATTTTCTAAAACAAGAAATGACCATAAGAGGTAGGTTACTT  349

seq1  TAGTAGCTTAATAACTATTTAAAAAATAAATCCATAATTTAAAAATTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTTAATAACTATTTAAAAAATAAATCCATAATTTAAAAATTCCT  399

seq1  CAAAAGAAACCCCTATAGTTCCAAGAACTTTCCTGGAGAATTCTAGACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAACCCCTATAGTTCCAAGAACTTTCCTGGAGAATTCTAGACTT  449

seq1  TTAAAGCACGTTTCTAGTTGCAGAATCCAGAGAACACTTCCTAGACCGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCACGTTTCTAGTTGCAGAATCCAGAGAACACTTCCTAGACCGAA  499

seq1  AACCAAACCAGAAAAAGGCAGTTCTAAAAAGAGAATAGAAAAAAATGGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAGAAAAAGGCAGTTCTAAAAAGAGAATAGAAAAAAATGGTT  549

seq1  GAGGTGACATCTCTGTAAACACAATACTTGGGAAACTGAGGCAGGAGGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACATCTCTGTAAACACAATACTTGGGAAACTGAGGCAGGAGGAT  599

seq1  TGCTACAAGTTTGATTATGGCCTCTAGAGATTATCAGGCCATCCAGGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAGTTTGATTATGGCCTCTAGAGATTATCAGGCCATCCAGGGAT  649

seq1  ACATGCACTCTACCTTGAAAAACAAAATAAAACCAGTAACAAAAACAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACTCTACCTTGAAAAACAAAATAAAACCAGTAACAAAAACAGGA  699

seq1  CAGGGGAGGATGTAGGGTAGAAGGGGAGGCAGAGGAGGGGGGAAGAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGGATGTAGGGTAGAAGGGGAGGCAGAGGAGGGGGGAAGAAATA  749

seq1  AGATAACAAGGAAGAAGAGACTGATGAAGAAAAGGAGAACTAAAGAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAAGGAAGAAGAGACTGATGAAGAAAAGGAGAACTAAAGAGAAA  799

seq1  AGATAACAGACTAATAGCTCTCAACAGTATAGATGCAAAATTCTTTAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAGACTAATAGCTCTCAACAGTATAGATGCAAAATTCTTTAAGA  849

seq1  AAACATAATGAGACAGAAATCAGCAATACCTGAAAAAAATTGTGTCATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATGAGACAGAAATCAGCAATACCTGAAAAAAATTGTGTCATGA  899

seq1  CCCATTAGAATTC  911
      |||||||||||||
seq2  CCCATTAGAATTC  912