BAC Information

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BAC

Clone NameB6Ng01-058L24
Chromosome13 (Build37)
Map Location 42,870,870 - 43,024,785
singlet/doubletdoublet
Overlap genePhactr1
Upstream gene9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
Downstream geneTbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058L24.bB6Ng01-058L24.g
ACCDH880243DH880244
length1,052288
definitionDH880243|Mus musculus domesticus DNA, BAC clone: B6Ng01-058L24, 5' end.DH880244|Mus musculus domesticus DNA, BAC clone: B6Ng01-058L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,023,727 - 43,024,785)(42,870,870 - 42,871,157)
sequence
gaattccagaacccttagcaatgccaagaggggagcaggcagaatagatt
cttgatctaaccttagtttaagcttaccttaagctaaccttagattgctt
acctttcccctccctctgttctcacccctttctcccccgaccccagtccc
tgttctgctatttttaacttaatttttttttaatttagcataagaaatgc
taagtcttattctggcattttcatgcatattacattatgctttttcttat
tagaagggtattaaggttgtcacaagaggaaacattattctttatgtaat
ctgaatccaaaaatgttctcatacacgtatgcatggtgtgatgtaactct
gtagctaatatatttatgatctagtgtggtttttaccccaaagcagcttt
acctgggctataacacacaggcatttctctgtcctccagaactcactcct
ctcaaccttacacacgccgcagctgctctgttcgatattttattatctcc
atgaaattaaaaccagggctatgatgctgcttataacacggggctgttca
tagtctggaaacaaaaaacaaacaaacctctgtataatgcattatcatct
aagtggcctccagtggtggacagtctgagatcctgcaggtttgcccagct
cctgacactgtcaggcaggctccaccaacctgagctccacccagccagct
cctcccttctggcatacatgtcttctaagacgcttgtacttttcttctta
gcagagaatagatcttctactgtaaggtttttgtcgctatttttgtttct
tgcataagatactgcattttgagtatatcctctctatttcattgtgtctt
ccagcataacgtgaggaagaaaacaaggctcacagtccagtgctcactag
gtatcttaagctacctcttacaaccttaccagacaaatctgattctgtgc
acaggtttaacctcaaaaacccaggcaagtggggagaggtccacagatct
gccatttcttacttctctactgtaagggctctcagcttggaatagttgag
tg
tgtgaacttctcaggtgatatataaatgctagggaccctataggtgggat
cagtggttgttggttattgagggtagggcattggttgtgttttgttagta
tttgtgctcaaagaagaaataaaagaaaaattagattcagggcttctttc
tctcttgctttctccatccttctttctatctattgatagggggtagcact
gtgggtgtggataaaagctgagtcaaaaaagaacccacatagtagcaaag
accagctacagtgcatgaaagttaccaccacacactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43023727_43024785
seq2: B6Ng01-058L24.b_49_1100 (reverse)

seq1  CACTCAACTATCCAAAGCTGGAAGAGCCCTTTACAGTAGGAGAAGTAAGA  50
      ||||||||||| | ||||||  ||||||| |||||||| |||||||||||
seq2  CACTCAACTATTCCAAGCTG--AGAGCCC-TTACAGTA-GAGAAGTAAGA  46

seq1  AATGGCAGATCTGTGGACCTCTCCCACCTTGCCCTGGGTTTTTTGAGGTT  100
      |||||||||||||||||||||||||  |||| |||||| |||||||||||
seq2  AATGGCAGATCTGTGGACCTCTCCCCACTTG-CCTGGG-TTTTTGAGGTT  94

seq1  AAACCTGTGCACAGAATCAGATTTGTCTTGGTAAGGTTGTAAGAGGTAGC  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAACCTGTGCACAGAATCAGATTTGTC-TGGTAAGGTTGTAAGAGGTAGC  143

seq1  TTAAGATACCTAGTGAGCACTGGACTGTGAGCCTTGTTTTCTTCCTCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATACCTAGTGAGCACTGGACTGTGAGCCTTGTTTTCTTCCTCACG  193

seq1  TTATGCTGGAAGACACAATGAAATAGAGAGGATATACTCAAAATGCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGGAAGACACAATGAAATAGAGAGGATATACTCAAAATGCAGTA  243

seq1  TCTTATGCAAGAAACAAAAATAGCGACAAAAACCTTACAGTAGAAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCAAGAAACAAAAATAGCGACAAAAACCTTACAGTAGAAGATCT  293

seq1  ATTCTCTGCTAAGAAGAAAAGTACAAGCGTCTTAGAAGACATGTATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGCTAAGAAGAAAAGTACAAGCGTCTTAGAAGACATGTATGCCA  343

seq1  GAAGGGAGGAGCTGGCTGGGTGGAGCTCAGGTTGGTGGAGCCTGCCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGGAGCTGGCTGGGTGGAGCTCAGGTTGGTGGAGCCTGCCTGAC  393

seq1  AGTGTCAGGAGCTGGGCAAACCTGCAGGATCTCAGACTGTCCACCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGGAGCTGGGCAAACCTGCAGGATCTCAGACTGTCCACCACTGG  443

seq1  AGGCCACTTAGATGATAATGCATTATACAGAGGTTTGTTTGTTTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTTAGATGATAATGCATTATACAGAGGTTTGTTTGTTTTTTGTT  493

seq1  TCCAGACTATGAACAGCCCCGTGTTATAAGCAGCATCATAGCCCTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTATGAACAGCCCCGTGTTATAAGCAGCATCATAGCCCTGGTTT  543

seq1  TAATTTCATGGAGATAATAAAATATCGAACAGAGCAGCTGCGGCGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATGGAGATAATAAAATATCGAACAGAGCAGCTGCGGCGTGTGT  593

seq1  AAGGTTGAGAGGAGTGAGTTCTGGAGGACAGAGAAATGCCTGTGTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGAGAGGAGTGAGTTCTGGAGGACAGAGAAATGCCTGTGTGTTAT  643

seq1  AGCCCAGGTAAAGCTGCTTTGGGGTAAAAACCACACTAGATCATAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGTAAAGCTGCTTTGGGGTAAAAACCACACTAGATCATAAATAT  693

seq1  ATTAGCTACAGAGTTACATCACACCATGCATACGTGTATGAGAACATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTACAGAGTTACATCACACCATGCATACGTGTATGAGAACATTTT  743

seq1  TGGATTCAGATTACATAAAGAATAATGTTTCCTCTTGTGACAACCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAGATTACATAAAGAATAATGTTTCCTCTTGTGACAACCTTAAT  793

seq1  ACCCTTCTAATAAGAAAAAGCATAATGTAATATGCATGAAAATGCCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTAATAAGAAAAAGCATAATGTAATATGCATGAAAATGCCAGAA  843

seq1  TAAGACTTAGCATTTCTTATGCTAAATTAAAAAAAAATTAAGTTAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAGCATTTCTTATGCTAAATTAAAAAAAAATTAAGTTAAAAAT  893

seq1  AGCAGAACAGGGACTGGGGTCGGGGGAGAAAGGGGTGAGAACAGAGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAGGGACTGGGGTCGGGGGAGAAAGGGGTGAGAACAGAGGGAG  943

seq1  GGGAAAGGTAAGCAATCTAAGGTTAGCTTAAGGTAAGCTTAAACTAAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGTAAGCAATCTAAGGTTAGCTTAAGGTAAGCTTAAACTAAGGT  993

seq1  TAGATCAAGAATCTATTCTGCCTGCTCCCCTCTTGGCATTGCTAAGGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAGAATCTATTCTGCCTGCTCCCCTCTTGGCATTGCTAAGGGTT  1043

seq1  CTGGAATTC  1059
      |||||||||
seq2  CTGGAATTC  1052

seq1: chr13_42870870_42871157
seq2: B6Ng01-058L24.g_73_360

seq1  TGTGAACTTCTCAGGTGATATATAAATGCTAGGGACCCTATAGGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTCTCAGGTGATATATAAATGCTAGGGACCCTATAGGTGGGAT  50

seq1  CAGTGGTTGTTGGTTATTGAGGGTAGGGCATTGGTTGTGTTTTGTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTGTTGGTTATTGAGGGTAGGGCATTGGTTGTGTTTTGTTAGTA  100

seq1  TTTGTGCTCAAAGAAGAAATAAAAGAAAAATTAGATTCAGGGCTTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTCAAAGAAGAAATAAAAGAAAAATTAGATTCAGGGCTTCTTTC  150

seq1  TCTCTTGCTTTCTCCATCCTTCTTTCTATCTATTGATAGGGGGTAGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTTTCTCCATCCTTCTTTCTATCTATTGATAGGGGGTAGCACT  200

seq1  GTGGGTGTGGATAAAAGCTGAGTCAAAAAAGAACCCACAAAGTAGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGGTGTGGATAAAAGCTGAGTCAAAAAAGAACCCACATAGTAGCAAAG  250

seq1  ACCAGCTACAGTGCATGAAAGTTACCACCACACACTAT  288
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTACAGTGCATGAAAGTTACCACCACACACTAT  288