BAC Information

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BAC

Clone NameB6Ng01-060H03
Chromosome13 (Build37)
Map Location 56,754,083 - 56,879,109
singlet/doubletdoublet
Overlap geneSmad5, EG627415, Trpc7
Upstream geneDdx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi
Downstream geneLOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H03.bB6Ng01-060H03.g
ACCDH881416DH881417
length9861,116
definitionDH881416|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H03, 5' end.DH881417|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,754,083 - 56,754,941)(56,877,624 - 56,879,109)
sequence
gaattcttgactttaagctagcaagaggcttttagccagactctgtagtg
agaggttgtctctcccctgcacttcttctggttttccatctttctgtcct
gccttgtatccaggacaactgtcagatgtgaaagcatctgaacccagcat
ctttttgttggccccaccacaggtacagctcttgttactgagcacatagt
gtgggcaagacaaatgagagaaagaaggagaagatggctttgactctctg
gcctagataccaaaatggggggtactcaaagagaccccatctcaccatct
gtggggcagtagaccatgccggcacccaggcacccatctctgaggatggt
aggtatctcctgtccccctgctccctacagagattcctggcccagaacat
gtgaccacactctccacaaagggatgtgaccaacataacccagaacacag
ttctccatattaatgaggccctgagggtttagccaataagcttcccttcc
tggacattcctttctgcaaaaggtaattaatctctggtccatcctgagga
ggtggtatgcacccatttttcatgatgaacagtcaataaacagtttgtaa
acaaggactgtctctcaccatcaagaacatggagaaagcctctgtctaca
gagctgcatccctgaggtctccagcagaaggcccctcggtgctcccagac
aatagcagctaagctaaggcaatctctgagtatctaagctggagttcccc
attcccctggccccaggctcatccgcagcccactggcccactgtctcagc
ttcctgagactctagtggtgtctgggtgtccaggagtttgggaaccccca
gcccctgggctcctcatcgaaagcccatgggtgccctccattcaaactca
atgcagtttccagcagtgcctggatgtcaaggggtcaggaacccgagctt
cagcctcagtctatgtcgtttctcactcgggctgag
gaattcactaacctcctgcctcagactcctgagtgttggtatttcaagcc
taaaggagggcacccagcagagacacttagttattgaggcttgcctcgaa
aggcacctagctttaactagcacccttgtcctcgggtcggcctaaaactg
tgcagtagtcaaatgctcaggacatcttagtttaacgggtagtagataac
tccattgtctgctgtgagactctgtgaaggacgatttaggacgatttttc
tctccgtgtttgtttggttcatgtttccactgaaggtacccaggggtggg
tacacggtcctgtcatgcagatgtcctgctccatggagtagaagacactt
caggcactgcagtgctaacacccacctcttggggatgaatggggacaact
tgctgatgagcggttcccaccatccaaaccatagagccacagggaaggga
acccacaggcacaggtgaagaagggctcactggcctgattaagcttactc
aggccatgggtgaaagaaacttagctcagtgcagataaaatcttaggacc
acagtctggagatagtccctgctgacaagatagtccctgctgacaagata
gtccctgctgagggcttcaacaggaaagtggcccgaagcgtccggtgctt
ggcagatagcacagttccgttttcctgtggttggagagaactccggactg
agcccaggtccactaccatagcttctgaactctagaagatgctgccgtgt
cctcttgatcctaggtgtggcgggtgaaccaagcactggatgggacagtg
ccggggagcaggaaactccggcccctctcttcatgccactcacgagagcc
agaaatctcagtttagggatatttttaacctctctgatttcacagaaccc
tggaacaactagctgacatatccagagctcggctccaccgggcttcctga
cgcatggctctattctggtgtcccttacatgtagtcaaacttgtcagtga
gtatctggaagctagggactccagccctgctccttcaaactggggatgac
ggtcagaccgtgtcacatctggggagacatctctccacaagcctaaagct
gacgtatgctgaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56754083_56754941
seq2: B6Ng01-060H03.b_42_900

seq1  GAATTCTTGACTTTAAGCTAGCAAGAGGCTTTTAGCCAGACTCTGTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTTTAAGCTAGCAAGAGGCTTTTAGCCAGACTCTGTAGTG  50

seq1  AGAGGTTGTCTCTCCCCTGCACTTCTTCTGGTTTTCCATCTTTCTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTGTCTCTCCCCTGCACTTCTTCTGGTTTTCCATCTTTCTGTCCT  100

seq1  GCCTTGTATCCAGGACAACTGTCAGATGTGAAAGCATCTGAACCCAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTATCCAGGACAACTGTCAGATGTGAAAGCATCTGAACCCAGCAT  150

seq1  CTTTTTGTTGGCCCCACCACAGGTACAGCTCTTGTTACTGAGCACATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTGGCCCCACCACAGGTACAGCTCTTGTTACTGAGCACATAGT  200

seq1  GTGGGCAAGACAAATGAGAGAAAGAAGGAGAAGATGGCTTTGACTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAAGACAAATGAGAGAAAGAAGGAGAAGATGGCTTTGACTCTCTG  250

seq1  GCCTAGATACCAAAATGGGGGGTACTCAAAGAGACCCCATCTCACCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATACCAAAATGGGGGGTACTCAAAGAGACCCCATCTCACCATCT  300

seq1  GTGGGGCAGTAGACCATGCCGGCACCCAGGCACCCATCTCTGAGGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCAGTAGACCATGCCGGCACCCAGGCACCCATCTCTGAGGATGGT  350

seq1  AGGTATCTCCTGTCCCCCTGCTCCCTACAGAGATTCCTGGCCCAGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTCCTGTCCCCCTGCTCCCTACAGAGATTCCTGGCCCAGAACAT  400

seq1  GTGACCACACTCTCCACAAAGGGATGTGACCAACATAACCCAGAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACACTCTCCACAAAGGGATGTGACCAACATAACCCAGAACACAG  450

seq1  TTCTCCATATTAATGAGGCCCTGAGGGTTTAGCCAATAAGCTTCCCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATATTAATGAGGCCCTGAGGGTTTAGCCAATAAGCTTCCCTTCC  500

seq1  TGGACATTCCTTTCTGCAAAAGGTAATTAATCTCTGGTCCATCCTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTCCTTTCTGCAAAAGGTAATTAATCTCTGGTCCATCCTGAGGA  550

seq1  GGTGGTATGCACCCATTTTTCATGATGAACAGTCAATAAACAGTTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATGCACCCATTTTTCATGATGAACAGTCAATAAACAGTTTGTAA  600

seq1  ACAAGGACTGTCTCTCACCATCAAGAACATGGAGAAAGCCTCTGTCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACTGTCTCTCACCATCAAGAACATGGAGAAAGCCTCTGTCTACA  650

seq1  GAGCTGCATCCCTGAGGTCTCCAGCAGAAGGCCCCTCGGTGCTCCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCATCCCTGAGGTCTCCAGCAGAAGGCCCCTCGGTGCTCCCAGAC  700

seq1  AATAGCAGCTAAGCTAAGGCAATCTCTGAGTATCTAAGCTGGAGTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGCTAAGCTAAGGCAATCTCTGAGTATCTAAGCTGGAGTTCCCC  750

seq1  ATTCCCCTGGCCCCAGGCTCATCCGCAGCCCACTGGCCCACTGTCTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGGCCCCAGGCTCATCCGCAGCCCACTGGCCCACTGTCTCAGC  800

seq1  TTCCTGAGACTCTAGTGGTGTCTGGGTGTCCAGGAGTTTGGGAACCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGACTCTAGTGGTGTCTGGGTGTCCAGGAGTTTGGGAACCCCCA  850

seq1  GCCCCTGGG  859
      |||||||||
seq2  GCCCCTGGG  859

seq1: chr13_56877624_56879109
seq2: B6Ng01-060H03.g_66_1181 (reverse)

seq1  GGCCTCAGCACTGGATGCTAGCAGGCTGGTGTGGTCCCAGGGTGCTCTGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGCGGAGAGACCTGGGCAGAGCTCTGCATAGCCTCCCCACCTCCCCAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCCACCTCCCCACCTCCCAGGAGGTGAGAACAGGACACTTCCCGCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGAAGTCAAGCCGAGGAGAATGGGAAGGAGAACCATCTTAGAGTTAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTCTGCTTGAGGCCCTGGGCCCAGTGTTGCTCTGGCCAGACAGGGAAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGGGAAGTCTTATCAGGTCAGCCAGGCAAATGCAGCCCTCGGGTGAGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAACACCTGCTGTTCACGAGAGCAGCCCAGGCCAGGCTAGAGGGTTGC  350
                                                        
seq2  --------------------------------------------------  0

seq1  CGGCCTCAGCCATACTGTCAGCTTCTGGGCCTTGATGGAGAGACTGCTTC  400
       |||||||| ||||| ||||||||  ||  |||| |||||||| ||  ||
seq2  -GGCCTCAG-CATAC-GTCAGCTTTAGG--CTTG-TGGAGAGA-TGTCTC  43

seq1  CCCAGATGTTGCACGGGCCTGACCGTGCATCCCCAGTTATGGAGGAGCAA  450
      |||||||||  ||| || |||||||| ||||||||||| || |||||| |
seq2  CCCAGATGTGACAC-GGTCTGACCGT-CATCCCCAGTT-TGAAGGAGC-A  89

seq1  GGGCTTGGGGTCCCTAGCTTCCAGATAACTCACTGAACAAAGTTTGAACT  500
      |||| ||| ||||||||||||||||| |||||||||   ||||||| |||
seq2  GGGC-TGGAGTCCCTAGCTTCCAGAT-ACTCACTGA--CAAGTTTG-ACT  134

seq1  ACATGTAAGGGACACCAAGAATAGAGCCATGCGTCAGGAAGCCCGGTGGA  550
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATGTAAGGGACACC-AGAATAGAGCCATGCGTCAGGAAGCCCGGTGGA  183

seq1  GCCGAGCTCTGGATATTGTCAGCTAGTTGTTCCAGGGTTCCTGTGAAATC  600
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  GCCGAGCTCTGGATA-TGTCAGCTAGTTGTTCCAGGGTT-CTGTGAAATC  231

seq1  AGAGAGGTTAAAAATATCCCTAAAACTGAGATTTCTGGCTCTCGTGAGTG  650
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGAGGTTAAAAATATCCCT-AAACTGAGATTTCTGGCTCTCGTGAGTG  280

seq1  GCATGAAGAGAGGGGCCGGAGTTTCCTGCTCCCCGGCACTGTCCCATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGAGAGGGGCCGGAGTTTCCTGCTCCCCGGCACTGTCCCATCCA  330

seq1  GTGCTTGGTTCACCCGCCACACCTAGGATCAAGAGGACACGGCAGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGTTCACCCGCCACACCTAGGATCAAGAGGACACGGCAGCATCT  380

seq1  TCTAGAGTTCAGAAGCTATGGTAGTGGACCTGGGCTCAGTCCGGAGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTTCAGAAGCTATGGTAGTGGACCTGGGCTCAGTCCGGAGTTCT  430

seq1  CTCCAACCACAGGAAAACGGAACTGTGCTATCTGCCAAGCACCGGACGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCACAGGAAAACGGAACTGTGCTATCTGCCAAGCACCGGACGCT  480

seq1  TCGGGCCACTTTCCTGTTGAAGCCCTCAGCAGGGACTATCTTGTCAGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCCACTTTCCTGTTGAAGCCCTCAGCAGGGACTATCTTGTCAGCAG  530

seq1  GGACTATCTTGTCAGCAGGGACTATCTCCAGACTGTGGTCCTAAGATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATCTTGTCAGCAGGGACTATCTCCAGACTGTGGTCCTAAGATTTT  580

seq1  ATCTGCACTGAGCTAAGTTTCTTTCACCCATGGCCTGAGTAAGCTTAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACTGAGCTAAGTTTCTTTCACCCATGGCCTGAGTAAGCTTAATC  630

seq1  AGGCCAGTGAGCCCTTCTTCACCTGTGCCTGTGGGTTCCCTTCCCTGTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTGAGCCCTTCTTCACCTGTGCCTGTGGGTTCCCTTCCCTGTGG  680

seq1  CTCTATGGTTTGGATGGTGGGAACCGCTCATCAGCAAGTTGTCCCCATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGTTTGGATGGTGGGAACCGCTCATCAGCAAGTTGTCCCCATTC  730

seq1  ATCCCCAAGAGGTGGGTGTTAGCACTGCAGTGCCTGAAGTGTCTTCTACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAAGAGGTGGGTGTTAGCACTGCAGTGCCTGAAGTGTCTTCTACT  780

seq1  CCATGGAGCAGGACATCTGCATGACAGGACCGTGTACCCACCCCTGGGTA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGCAGGACATCTGCATGACAGGACCGTGTACCCACCCCTGGGTA  830

seq1  CCTTCAGTGGAAACATGAACCAAACAAACACGGAGAGAAAAATCGTCCTA  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTGGAAACATGAACCAAACAAACACGGAGAGAAAAATCGTCCTA  880

seq1  AATCGTCCTTCACAGAGTCTCACAGCAGACAATGGAGTTATCTACTACCC  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTCCTTCACAGAGTCTCACAGCAGACAATGGAGTTATCTACTACCC  930

seq1  GTTAAACTAAGATGTCCTGAGCATTTGACTACTGCACAGTTTTAGGCCGA  1350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTAAGATGTCCTGAGCATTTGACTACTGCACAGTTTTAGGCCGA  980

seq1  CCCGAGGACAAGGGTGCTAGTTAAAGCTAGGTGCCTTTCGAGGCAAGCCT  1400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGACAAGGGTGCTAGTTAAAGCTAGGTGCCTTTCGAGGCAAGCCT  1030

seq1  CAATAACTAAGTGTCTCTGCTGGGTGCCCTCCTTTAGGCTTGAAATACCA  1450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTAAGTGTCTCTGCTGGGTGCCCTCCTTTAGGCTTGAAATACCA  1080

seq1  ACACTCAGGAGTCTGAGGCAGGAGGTTAGTGAATTC  1486
      ||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGAGTCTGAGGCAGGAGGTTAGTGAATTC  1116