BAC Information

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BAC

Clone NameB6Ng01-061F10
Chromosome19 (Build37)13 (Build37)
Map Location 46,569,203 - 46,570,39743,392,670 - 43,392,721
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBtrc, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
Downstream geneTrim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061F10.bB6Ng01-061F10.g
ACCDH882045DH882046
length1,16257
definitionDH882045|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F10, 5' end.DH882046|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,569,203 - 46,570,397)(43,392,670 - 43,392,721)
sequence
gaattctgggaaaaagtcaagagcgggagatttcatcccagactcggagg
agacggacaaatgaaactgaggagaggtaaccaaccatgtggcagacatg
aacaaacaggttatatgtgtcacaagctgatcggggaatgagcctaggca
tttactcataaggaagtctcagagttgtcattcggggaacaacgaggcat
gggtagaggagttctcagttccaaatggcggccatcatatgcccatcatg
ttaggtaggtatcgaatccaagtttagctggaagcacaagcttagaacaa
aagattcaggtattagaaaggtcccaagtggaaggtgtagacaagaacct
ctgggagcaatttcctagctggcaaggggactaaatccctctaagagagc
aagcagaggcctctgagcagtagagactgagctgagcagagcctcagtcc
aggaccccggcaggcacgagccacttcccagagctgaggttagcagggca
gctccaggccagtgcccagaggtatgaggctcagctctcacggaagcgga
aacagtgacttcagccccgaaataagcaagggcagcctgctaggcagagc
caaggggcacaaagctagcaccatagacacatgctagcctgaggagtcta
cagagccacggaagggcagaaagaacatttccccagagccgtggtctgac
tgaaaagccacaaacttcctaactggcagtgtatacgtttgaaaacaata
aaagtaagacaaatatttagtttgaaaataataaagtctctaaagaagag
aaagaaaaatagaaatgttttaaaagatgaatagataccaaaaagaaaga
agctgactaaatataaaatatagtcagccgggcgtggtggcacaggcctt
taatcctagcactcggggaggcagaagcaggcagatttctgagttcgaga
ccagcctgttctacagagtgagttcaggacagctagggctacacagagaa
ccctgtctcaaaaaacaaatcaaaaacacacaacacaacaaaatctcaac
aatataagtctccagaatgacgatatggaagtaaggtctcagagaggtag
aagtagagagatagaaatattttcatataaaatgaaacataaagaaggca
ttggacctcata
cataggctgtgatctctctctctctctctctctctctctctctctctctc
tctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46569203_46570397
seq2: B6Ng01-061F10.b_47_1208 (reverse)

seq1  TATGGGGTCCAAATGCCTTCTTCTATTGTGTTTTCCATTTTTTAATATGA  50
      |||| ||||| ||||||||||    || |||||  ||||||   ||||| 
seq2  TATGAGGTCC-AATGCCTTCT----TTATGTTT--CATTTT---ATATG-  39

seq1  AAAATATTTTCTAATCTCTCTAACTCTCTACCTTCTCTTGGAGACTTTAC  100
      |||||| ||||| |||||||| ||| |||||| |||||  ||||| ||||
seq2  AAAATA-TTTCT-ATCTCTCT-ACT-TCTACC-TCTCT--GAGACCTTAC  82

seq1  CTTTCCATCTCTGTCATTTCTTGGGAGACTTTATATTGTTGTGGTTTTTG  150
        |||||| || |||| ||||  |||||| ||||||||||| | ||    
seq2  --TTCCATATC-GTCA-TTCT--GGAGAC-TTATATTGTTGAGATT----  121

seq1  TTGTTGTTGTTGTTGTTTTTTGATTTTGTTTTTTTGAGACAGGGTTTCTC  200
      |||||| ||||||   ||||||||||   ||||||||||||||| |||||
seq2  TTGTTG-TGTTGTGTGTTTTTGATTT--GTTTTTTGAGACAGGG-TTCTC  167

seq1  TGTGTAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTC  250
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TGTGTAGCCCTAGCTGTCCT-GAACTCACTCTGTAGAACAGGCTGGTCTC  216

seq1  GAACTCAGAAATCTGCCTGCTTCTGCCT-CCCGAGTGCTAGGATTAAAGG  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAACTCAGAAATCTGCCTGCTTCTGCCTCCCCGAGTGCTAGGATTAAAGG  266

seq1  CCTGTGCCACCACGCCCGGCTGACTATATTTTATATTTAGTCAGCTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCACCACGCCCGGCTGACTATATTTTATATTTAGTCAGCTTCTT  316

seq1  TCTTTTTGGTATCTATTCATCTTTTAAAACATTTCTATTTTTCTTTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGGTATCTATTCATCTTTTAAAACATTTCTATTTTTCTTTCTCT  366

seq1  TCTTTAGAGACTTTATTATTTTCAAACTAAATATTTGTCTTACTTTTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGACTTTATTATTTTCAAACTAAATATTTGTCTTACTTTTATT  416

seq1  GTTTTCAAACGTATACACTGCCAGTTAGGAAGTTTGTGGCTTTTCAGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAACGTATACACTGCCAGTTAGGAAGTTTGTGGCTTTTCAGTCA  466

seq1  GACCACGGCTCTGGGGAAATGTTCTTTCTGCCCTTCCGTGGCTCTGTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGGCTCTGGGGAAATGTTCTTTCTGCCCTTCCGTGGCTCTGTAGA  516

seq1  CTCCTCAGGCTAGCATGTGTCTATGGTGCTAGCTTTGTGCCCCTTGGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGCTAGCATGTGTCTATGGTGCTAGCTTTGTGCCCCTTGGCTC  566

seq1  TGCCTAGCAGGCTGCCCTTGCTTATTTCGGGGCTGAAGTCACTGTTTCCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGCAGGCTGCCCTTGCTTATTTCGGGGCTGAAGTCACTGTTTCCG  616

seq1  CTTCCGTGAGAGCTGAGCCTCATACCTCTGGGCACTGGCCTGGAGCTGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTGAGAGCTGAGCCTCATACCTCTGGGCACTGGCCTGGAGCTGCC  666

seq1  CTGCTAACCTCAGCTCTGGGAAGTGGCTCGTGCCTGCCGGGGTCCTGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACCTCAGCTCTGGGAAGTGGCTCGTGCCTGCCGGGGTCCTGGAC  716

seq1  TGAGGCTCTGCTCAGCTCAGTCTCTACTGCTCAGAGGCCTCTGCTTGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTGCTCAGCTCAGTCTCTACTGCTCAGAGGCCTCTGCTTGCTC  766

seq1  TCTTAGAGGGATTTAGTCCCCTTGCCAGCTAGGAAATTGCTCCCAGAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGGGATTTAGTCCCCTTGCCAGCTAGGAAATTGCTCCCAGAGGT  816

seq1  TCTTGTCTACACCTTCCACTTGGGACCTTTCTAATACCTGAATCTTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTACACCTTCCACTTGGGACCTTTCTAATACCTGAATCTTTTGT  866

seq1  TCTAAGCTTGTGCTTCCAGCTAAACTTGGATTCGATACCTACCTAACATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTTGTGCTTCCAGCTAAACTTGGATTCGATACCTACCTAACATG  916

seq1  ATGGGCATATGATGGCCGCCATTTGGAACTGAGAACTCCTCTACCCATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATATGATGGCCGCCATTTGGAACTGAGAACTCCTCTACCCATGC  966

seq1  CTCGTTGTTCCCCGAATGACAACTCTGAGACTTCCTTATGAGTAAATGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTGTTCCCCGAATGACAACTCTGAGACTTCCTTATGAGTAAATGCC  1016

seq1  TAGGCTCATTCCCCGATCAGCTTGTGACACATATAACCTGTTTGTTCATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCATTCCCCGATCAGCTTGTGACACATATAACCTGTTTGTTCATG  1066

seq1  TCTGCCACATGGTTGGTTACCTCTCCTCAGTTTCATTTGTCCGTCTCCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACATGGTTGGTTACCTCTCCTCAGTTTCATTTGTCCGTCTCCTC  1116

seq1  CGAGTCTGGGATGAAATCTCCCGCTCTTGACTTTTTCCCAGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTGGGATGAAATCTCCCGCTCTTGACTTTTTCCCAGAATTC  1162

seq1: chr13_43392670_43392721
seq2: B6Ng01-061F10.g_80_132 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATC-CA  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCACA  50

seq1  GCC  52
      |||
seq2  GCC  53