BAC Information

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BAC

Clone NameB6Ng01-061O07
Chromosome13 (Build37)
Map Location 112,214,548 - 112,367,920
singlet/doubletdoublet
Overlap geneGpbp1
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953
Downstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061O07.bB6Ng01-061O07.g
ACCDH882450DH882451
length1,0491,072
definitionDH882450|Mus musculus domesticus DNA, BAC clone: B6Ng01-061O07, 5' end.DH882451|Mus musculus domesticus DNA, BAC clone: B6Ng01-061O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,214,548 - 112,215,603)(112,366,834 - 112,367,920)
sequence
gaattcaatatacttatggaaattataatcattctaaatccttatcttaa
attaaaacaagatatattttgaaatgctattttaaataggattagcataa
ggattctgcttattaattacaatttacacaagaaatgtgagagtgaggag
tcaaagacttacaaagtcactaccttgtggtactatgcagaaaatgagca
ttcaaatccgagctagttctgttccacagttccatattacatctacaatt
taaccactctgcatttgtaggctcttttctaatgactcaagcttttacta
gaagccaactctttagacagcaagttaaaactatgactaaatacactcga
attacatgtatatgtctccatcctctgcttatgccatcatgaatgggtag
aactgtactgcagctaatgcaccatatttataaaacattacattaagaca
caaacattagctaagagctgcctagactaaaataaaagcaaaagaactgc
ctgaatacaaagatgctccaaaataagttttcattattctattttgcaaa
taatagtgcaatccaataggcaatgttacaccgccagctttgccatacta
cccattaggtattctcgtggctgatttcatatatatatatatatatatat
atatatatatatatatataaatataatataactttttccatttagaatga
attctggcaaactccaaaataaaagacctactttttaaaacctatattta
gtattttgttatacttagactgaaattttatggggagcaaaaacgtaggc
gtattttggtttaatttctagtcttggcgggaaacaaaacaaggaaaaag
tagtcctagcttatggtgagagctgaggataatacaaaacagataaaata
tgtagtctggcctaaaacgcaaacacctggtctatgactactttctttat
acagacaagtctttatactgcacccctatcagcagctcacaactactagc
aacttcagctttcagggatctgacctcctccttatgcagaatattaaat
gaattcttttaattctcattttgtacccagatgtggtagcccatgcctat
aaactcagaactcaggcggctggagcaggattatttttgacttttattat
tactatttattttccctagtgttacataacctattacctaaataatgttg
gtttatcaatacggactataattcatccattgatcccaaatattttatga
tgatgcctaaaagcttaaatcgttcaccgctgcagtcctgcacacctgtc
tgctctctaccttccgagtgcctgagccggccttgtgtttatctcaagga
acggtaattgctcgtcagtacggaaaatttcttttatctctgtcctctct
tgccagccgatcttcctaactcttatctacattcattcgatatactttct
gttttcttcccaaactacagtttgacttgggccctcattagctgctaaaa
tgacctgtttttttgtggcaaaaggtcagctgacctgagaagcaaggtag
gtggaaggtctgggacgcctttgctctgaaagtcactggagaaaatggta
ttgaggacaaagtgagacacaggaaagagggaagtgagaggccacggtga
catgtgaggtgaggcttccctggacaaatgtgggccatagggaacaaggg
gaacaggtcccaagaaacagactctgcatcgggaaatcgtcccgaaagag
catgagggggtctgctagggctggtgtctggttgatggaaccagaaagtg
gctggtttgaccccctgaggatttgttatggttggggggcaaggaggtct
gaatggggtctccctatgtctctctagctgctctcaaaactcttagtttc
aaaagctccttacactgcctcaaaagctctctgccacatcgctgatcaag
atttcagaaaaaacaaaccaagtcatcagttgtctctctaaagacaaaga
ttctttatttcaacaaagaacaaaacacacactgggggtgataaaactga
gctggacttttccagtcttctttggtgggattgttctgggtagacagatt
ccttggtgaagaatggagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112214548_112215603
seq2: B6Ng01-061O07.b_48_1096

seq1  GAATTCAATATACTTATGGAAATTATAATCATTCTAAATCCTTATCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATACTTATGGAAATTATAATCATTCTAAATCCTTATCTTAA  50

seq1  ATTAAAACAAGATATATTTTGAAATGCTATTTTAAATAGGATTAGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACAAGATATATTTTGAAATGCTATTTTAAATAGGATTAGCATAA  100

seq1  GGATTCTGCTTATTAATTACAATTTACACAAGAAATGTGAGAGTGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGCTTATTAATTACAATTTACACAAGAAATGTGAGAGTGAGGAG  150

seq1  TCAAAGACTTACAAAGTCACTACCTTGTGGTACTATGCAGAAAATGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACTTACAAAGTCACTACCTTGTGGTACTATGCAGAAAATGAGCA  200

seq1  TTCAAATCCGAGCTAGTTCTGTTCCACAGTTCCATATTACATCTACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCCGAGCTAGTTCTGTTCCACAGTTCCATATTACATCTACAATT  250

seq1  TAACCACTCTGCATTTGTAGGCTCTTTTCTAATGACTCAAGCTTTTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCTGCATTTGTAGGCTCTTTTCTAATGACTCAAGCTTTTACTA  300

seq1  GAAGCCAACTCTTTAGACAGCAAGTTAAAACTATGACTAAATACACTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAACTCTTTAGACAGCAAGTTAAAACTATGACTAAATACACTCGA  350

seq1  ATTACATGTATATGTCTCCATCCTCTGCTTATGCCATCATGAATGGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTATATGTCTCCATCCTCTGCTTATGCCATCATGAATGGGTAG  400

seq1  AACTGTACTGCAGCTAATGCACCATATTTATAAAACATTACATTAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACTGCAGCTAATGCACCATATTTATAAAACATTACATTAAGACA  450

seq1  CAAACATTAGCTAAGAGCTGCCTAGACTAAAATAAAAGCAAAAGAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTAGCTAAGAGCTGCCTAGACTAAAATAAAAGCAAAAGAACTGC  500

seq1  CTGAATACAAAGATGCTCCAAAATAAGTTTTCATTATTCTATTTTGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATACAAAGATGCTCCAAAATAAGTTTTCATTATTCTATTTTGCAAA  550

seq1  TAATAGTGCAATCCAATAGGCAATGTTACACCGCCAGCTTTGCCATACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTGCAATCCAATAGGCAATGTTACACCGCCAGCTTTGCCATACTA  600

seq1  CCCATTAGGTATTCTCGTGGCTGATTTCATATATATATATATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGGTATTCTCGTGGCTGATTTCATATATATATATATATATATAT  650

seq1  ATATATATATATATATATAAATATAATATAACTTTTTCCATTTAGAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATAAATATAATATAACTTTTTCCATTTAGAATGA  700

seq1  ATTCTGGCAAACTCCAAAATAAAAGACCTACTTTTTAAAACCTATATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCAAACTCCAAAATAAAAGACCTACTTTTTAAAACCTATATTTA  750

seq1  GTATTTTGTTATACTTAGACTGAAATTTTAT-GGGAGCAAAAACGTAGGC  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATTTTGTTATACTTAGACTGAAATTTTATGGGGAGCAAAAACGTAGGC  800

seq1  GTATTTTGGTTTAATTTCTAGTCTTGGCGGGAAACAAAACAAGGAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGGTTTAATTTCTAGTCTTGGCGGGAAACAAAACAAGGAAAAAG  850

seq1  TAAGTCCTAGCTTATGGTGAGAGCTGAGGATTAATACAAAAACAGATAAA  899
      | |||||||||||||||||||||||||||| |||||| ||||||||| ||
seq2  T-AGTCCTAGCTTATGGTGAGAGCTGAGGA-TAATAC-AAAACAGAT-AA  896

seq1  AATATTGTAGTCTGGCATAAAACGCCAAAACACCTGGTCTATGACTACTT  949
      |||| ||||||||||| ||||||||  |||||||||||||||||||||||
seq2  AATA-TGTAGTCTGGCCTAAAACGC--AAACACCTGGTCTATGACTACTT  943

seq1  TCTTTATAACAGACAAGGTCTTTATACTGCACCCCTATCAGGCAGCTCAC  999
      ||||||| |||||||| ||||||||||||||||||||||| |||||||||
seq2  TCTTTAT-ACAGACAA-GTCTTTATACTGCACCCCTATCA-GCAGCTCAC  990

seq1  AACTACTAGCAACTCCAGCTCCAGGGGATCTGACCTCCTCC-TATGCAGA  1048
      |||||||||||||| |||||    ||||||||||||||||| ||||||||
seq2  AACTACTAGCAACTTCAGCTTTCAGGGATCTGACCTCCTCCTTATGCAGA  1040

seq1  ATA-TAAAT  1056
      ||| |||||
seq2  ATATTAAAT  1049

seq1: chr13_112366834_112367920
seq2: B6Ng01-061O07.g_71_1142 (reverse)

seq1  TCCTCTCCATCTCTCCACAAAGAAATCT-TCTGACCCAGAAACAATCCAA  49
      |||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |
seq2  TCCTCTCCAT-TCTTCACCAAGGAATCTGTCT-ACCCAG-AACAATCCCA  47

seq1  CCAAGGAGGACTGGGAAAAGTCCAGCTGCAGTTTTTATCACCCCCAAGTG  99
      |||| || |||| |||||||||||||| ||| ||||||||||||| ||||
seq2  CCAAAGAAGACT-GGAAAAGTCCAGCT-CAG-TTTTATCACCCCC-AGTG  93

seq1  CTGTGTTTTGTTCTTTTGTTGAAATAAAGAATCTTTTTGTCTTTAGGAGA  149
       |||||||||||| |||||||||||||||||||  |||||||||| ||||
seq2  -TGTGTTTTGTTC-TTTGTTGAAATAAAGAATC--TTTGTCTTTA-GAGA  138

seq1  GACAAACTGATGACTTGGTTTTGTTTTTTCTGAAATCCTTGATCAGGCGA  199
      ||| |||||||||||||| ||||||||||||||||| |||||||| ||||
seq2  GAC-AACTGATGACTTGG-TTTGTTTTTTCTGAAAT-CTTGATCA-GCGA  184

seq1  TGTGGCAGAGAGCTTTTGAGGCAGTGTGAGGAGCTTTTGAACTTAGGAGT  249
      ||||||||||||||||||||||||||| |||||||||||||  || ||||
seq2  TGTGGCAGAGAGCTTTTGAGGCAGTGTAAGGAGCTTTTGAAACTAAGAGT  234

seq1  TTTGAGAGCAGCTGGAGAGACATAGGGAGACCCCATTCAGACCTCCTTGC  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGCAGCTAGAGAGACATAGGGAGACCCCATTCAGACCTCCTTGC  284

seq1  CCCCCAACCATAACAAATCCTCAGGGGGTCAAACCAGCCACTTTCTGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCATAACAAATCCTCAGGGGGTCAAACCAGCCACTTTCTGGTT  334

seq1  CCATCAACCAGACACCAGCCCTAGCAGACCCCCTCATGCTCCTTCGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCATCAACCAGACACCAGCCCTAGCAGACCCCCTCATGCTCTTTCGGGAC  384

seq1  GATTTCCCGATGCAGAGTCTGTTTCTTGGGACCTGTTCCCCTTGTTCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCGATGCAGAGTCTGTTTCTTGGGACCTGTTCCCCTTGTTCCCT  434

seq1  ATGGCCCACATTTGTCCAGGGAAGCCTCACCTCACATGTCACCGTGGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCACATTTGTCCAGGGAAGCCTCACCTCACATGTCACCGTGGCCT  484

seq1  CTCACTTCCCTCTTTCCTGTGTCTCACTTTGTCCTCAATACCATTTTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCCTCTTTCCTGTGTCTCACTTTGTCCTCAATACCATTTTCTC  534

seq1  CAGTGACTTTCAGAGCAAAGGCGTCCCAGACCTTCCACCTACCTTGCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTTTCAGAGCAAAGGCGTCCCAGACCTTCCACCTACCTTGCTTC  584

seq1  TCAGGTCAGCTGACCTTTTGCCACAAAAAAACAGGTCATTTTAGCAGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAGCTGACCTTTTGCCACAAAAAAACAGGTCATTTTAGCAGCTA  634

seq1  ATGAGGGCCCAAGTCAAACTGTAGTTTGGGAAGAAAACAGAAAGTATATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGCCCAAGTCAAACTGTAGTTTGGGAAGAAAACAGAAAGTATATC  684

seq1  GAATGAATGTAGATAAGAGTTAGGAAGATCGGCTGGCAAGAGAGGACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGTAGATAAGAGTTAGGAAGATCGGCTGGCAAGAGAGGACAGA  734

seq1  GATAAAAGAAATTTTCCGTACTGACGAGCAATTACCGTTCCTTGAGATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAAATTTTCCGTACTGACGAGCAATTACCGTTCCTTGAGATAA  784

seq1  ACACAAGGCCGGCTCAGGCACTCGGAAGGTAGAGAGCAGACAGGTGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGCCGGCTCAGGCACTCGGAAGGTAGAGAGCAGACAGGTGTGCA  834

seq1  GGACTGCAGCGGTGAACGATTTAAGCTTTTAGGCATCATCATAAAATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCAGCGGTGAACGATTTAAGCTTTTAGGCATCATCATAAAATATT  884

seq1  TGGGATCAATGGATGAATTATAGTCCGTATTGATAAACCAACATTATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAATGGATGAATTATAGTCCGTATTGATAAACCAACATTATTTA  934

seq1  GGTAATAGGTTATGTAACACTAGGGAAAATAAATAGTAATAATAAAAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAGGTTATGTAACACTAGGGAAAATAAATAGTAATAATAAAAGTC  984

seq1  AAAAATAATCCTGCTCCAGCCGCCTGAGTTCTGAGTTTATAGGCATGGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCCTGCTCCAGCCGCCTGAGTTCTGAGTTTATAGGCATGGGC  1034

seq1  TACCACATCTGGGTACAAAATGAGAATTAAAAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||
seq2  TACCACATCTGGGTACAAAATGAGAATTAAAAGAATTC  1072