BAC Information

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BAC

Clone NameB6Ng01-064M05
Chromosome13 (Build37)
Map Location 65,927,478 - 66,129,245
singlet/doubletdoublet
Overlap geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064M05.bB6Ng01-064M05.g
ACCDH884451DH884452
length1,180290
definitionDH884451|Mus musculus domesticus DNA, BAC clone: B6Ng01-064M05, 5' end.DH884452|Mus musculus domesticus DNA, BAC clone: B6Ng01-064M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,128,039 - 66,129,245)(65,927,478 - 65,927,792)
sequence
gaattctgcaacatatgagaaggtgaaaagtagaaattattggaatagaa
gaagaatatcagctcaaaggtctagaaaatattttcagtgaaatcataaa
tgaaaaattttctaaagaagaaaatacctattaaagtacaaaatagatcc
aaaatagcaaacatattggatcaaaaaagtctttgttccacaaactgtca
aaactctaaacatataaagcaaagaaatatgaaaaactgcaacagaaaga
aactaaaagctaaacaaaacaaaaacaagtaacgtatggaagcagaccta
ttagcttcatatctgtcttctcaatgtctactagaaaagacaacagtgtt
tggaccgttttgttctgcatagtgaaagaaactatccatgtttctacaag
aaagcaactggtcaaaatgttttggacagatttagaatgagctatgataa
tgaagttattcagaggtcactgcctgagacctcacaggtggtcacatttg
gatgatgcttcccatgcagccccagagaggacccaccaccccatctccca
cggctcaacaacctgcccctaccgattgtgggcagtgatcctgtgctcac
catgtctaaatctcagagcttcctgaggccccctcaatgcacccaacagc
agatctcagagcaggacacagagaaccattcaagcctgcacagccacagt
gatcttttagaaaggcacccggaagatcccgcctctttgtctgactggca
tgtctgcctggcgaccttgattggccagtgagtcttacccctcctcaatg
ttaaagtgtgcttcctgtcgaaggctggactttttccagacctcagaatc
ccttttcagctcattagcatttgtgcttgccctgggtgaagattccacca
tttcagctcaggctattctgctgccagctcctcccctctgtgagcaatga
tcctgacttcagacttgcctgaactttctcatagacttgcctcttttctg
aatcaaggtgagtagttcaatagccattactctagctgcattgtaggtat
tattctaaccagattggaggtggccaggctattacatttaaaaaggaatt
tagataacaacaggctgtaggacttcagcttgtcccaagaattgcaggcc
ttcaccgaatgataaattcacatgctggga
catagaaagattctatctccaaaaagaaaaggaacgaaaagaagagaagt
gaaggggggaagggggaagggggaaaagaagggaaagggagaagggggca
aagaaggggaaaaggaagggggagctccctggatgacttacagcaaacca
aacaacaggtgttgaggtttggtcggttgctctgttttataatagtaaat
actgccccccaaggtctggttgcccacagggacaaggtagtctttacata
caccaagtgatgctatgtaacctttctctttaatttaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66128039_66129245
seq2: B6Ng01-064M05.b_47_1226 (reverse)

seq1  TCCCAGCATGGATTGATACTTATCATCTGGTGAAAGGGACCTGCAATTTC  50
      ||||||||||   ||| | |||||||  ||||||   | |||||||||  
seq2  TCCCAGCATG---TGA-ATTTATCATTCGGTGAA---GGCCTGCAATT--  41

seq1  CCTGAGACAAGGTGAAGTCATGAACAAGCCTGTTGTATTCTAAAATTCCT  100
      | || |||||| ||||||| |  || ||||||||||  ||| ||||||||
seq2  CTTGGGACAAGCTGAAGTCCT--AC-AGCCTGTTGTTATCT-AAATTCCT  87

seq1  TTTTAATGTTAATAGCCTGGCCATCCTTCCATTCCTGGGTCAGATTGATA  150
      ||||||   ||||||||||||||  | |||| ||   ||| ||| | |||
seq2  TTTTAAATGTAATAGCCTGGCCA--CCTCCAATC--TGGTTAGAATAATA  133

seq1  CCTACAATGCAACTAGAGTAATGGGCTATTCAAGCTACTCACCTTGATTT  200
      ||||||||||| |||||||||| ||||||| || ||||||||||||| ||
seq2  CCTACAATGCAGCTAGAGTAAT-GGCTATTGAA-CTACTCACCTTGA-TT  180

seq1  CAGGAAAAAGTAGGCAAGTGCTATGAGGAATGTTCAGGCAAGGTCTGAAG  250
      |||  ||||| |||||||| |||||| ||| |||||||||| ||||||||
seq2  CAG--AAAAG-AGGCAAGT-CTATGA-GAAAGTTCAGGCAA-GTCTGAAG  224

seq1  TCAGGACCATTGCTCACAGAGGGGAGGAGCTGGCAGCAGAACAGCCTGAG  300
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAGGATCATTGCTCACAGAGGGGAGGAGCTGGCAGCAGAATAGCCTGAG  274

seq1  CTGGAATGGTGGATTCTTCCCCCAGGGCAAGCACAAATGCTAATGAGCTG  350
      ||| ||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  CTGAAATGGTGGAATCTTCACCCAGGGCAAGCACAAATGCTAATGAGCTG  324

seq1  AAAAGGGCTCCGGAGATCTGGAAAAAGTCCAGTCTTCGACAGGAAGCACA  400
      ||||||| | | ||| |||||||||||||||| |||||||||||||||||
seq2  AAAAGGGATTCTGAGGTCTGGAAAAAGTCCAGCCTTCGACAGGAAGCACA  374

seq1  CATTAACATTGAGGAGGGGTAAGACTCACTGGCCAATCAAGGTTGCCAGG  450
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTAACATTGAGGAGGGGTAAGACTCACTGGCCAATCAAGGTCGCCAGG  424

seq1  CAGACATGCCAGTCAGACAAAGAGGCGGGATCTTCCGGGTGCCTTTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGACATGCCAGTCAGACAAAGAGGCGGGATCTTCCGGGTGCCTTTCTAA  474

seq1  AAGATCGCTGTGGCTGTGCAGGCTTGAATGGTTCTCTGTGTCCTGCTCTG  550
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACTGTGGCTGTGCAGGCTTGAATGGTTCTCTGTGTCCTGCTCTG  524

seq1  AGATCTGCTGTCGGGTGCATTGAGGGGACCTCAGGAAGTTCTGAGATTTA  600
      ||||||||||| ||||||||||||||| |||||||||| |||||||||||
seq2  AGATCTGCTGTTGGGTGCATTGAGGGGGCCTCAGGAAGCTCTGAGATTTA  574

seq1  GACATGGTGAGCACAGGATCACTGCCCACAATGGGTAGGGGCAGGTTGTT  650
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACATGGTGAGCACAGGATCACTGCCCACAATCGGTAGGGGCAGGTTGTT  624

seq1  AAGCCGTGGGAGCTGGGGTGGTGGGTCCTTTCTGGGGCTGCATGGGAAGC  700
       ||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GAGCCGTGGGAGATGGGGTGGTGGGTCCTCTCTGGGGCTGCATGGGAAGC  674

seq1  ATCATCCAAATATGACCACCTGTGAGGTCTCAGGCAGTGACCTCTGAATA  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAAATGTGACCACCTGTGAGGTCTCAGGCAGTGACCTCTGAATA  724

seq1  ACTTCATTATCATAGCTGATTCTGAATCTGTCCAAAACATTTGCACCAGT  800
      ||||||||||||||||| ||||| ||||||||||||||||||  ||||||
seq2  ACTTCATTATCATAGCTCATTCTAAATCTGTCCAAAACATTTTGACCAGT  774

seq1  TGCTTTCTTGTAGAAACATGGGTGGTTTCTTTGACTCTGCAGCACAAAAC  850
      ||||||||||||||||||||| | |||||||| ||| ||||| |||||||
seq2  TGCTTTCTTGTAGAAACATGGATAGTTTCTTTCACTATGCAGAACAAAAC  824

seq1  GGTCCAAACACTGTTGTCTTTTCTAGTAGACATTGAGAAGACAGATATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAACACTGTTGTCTTTTCTAGTAGACATTGAGAAGACAGATATGA  874

seq1  AGCTAATAGGTCTGCTTCCATACGTTACTTGTTTTTGTTTTGTTTAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAGGTCTGCTTCCATACGTTACTTGTTTTTGTTTTGTTTAGCTT  924

seq1  TTAGTTTCTTTCTGTTGCAGTTTTTCATATTTCTTTGCTTTATATGTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTTTCTGTTGCAGTTTTTCATATTTCTTTGCTTTATATGTTTA  974

seq1  GAGTTTTGACAGTTTGTGGCACAAAGACTTTTTTGGTCCAATATGTTTGC  1050
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GAGTTTTGACAGTTTGTGGAACAAAGACTTTTTTGATCCAATATGTTTGC  1024

seq1  TATTTTGGATGCTATTTTGTACTTTAATAGGTATTTTCTTCTTTAGAAAA  1100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGAT-CTATTTTGTACTTTAATAGGTATTTTCTTCTTTAGAAAA  1073

seq1  TTTTTCATTTATGATTTCACTGAAAATATTTTCTAGACCTTTGAGCTGAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTATGATTTCACTGAAAATATTTTCTAGACCTTTGAGCTGAT  1123

seq1  ATTCTTCTTCTATTCCAATAATTTCTACTTTTCACCTTCTCATATGTTGC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTCTATTCCAATAATTTCTACTTTTCACCTTCTCATATGTTGC  1173

seq1  AGAATTC  1207
      |||||||
seq2  AGAATTC  1180

seq1: chr13_65927478_65927792
seq2: B6Ng01-064M05.g_80_365

seq1  GAAAGATTCTATCTCCAAAAAGAAAAGGAACAAGAAGAAGAGAAGGGAAG  50
      ||||||||||||||||||||||||||||||| | ||||||||||| ||||
seq2  GAAAGATTCTATCTCCAAAAAGAAAAGGAACGAAAAGAAGAGAAGTGAAG  50

seq1  GGAAGGGGGAAGGGGGAAGGGGAGAAAAGAAGGGGAAAAGGAGAAAAGAA  100
          ||||||||||||||||||                    ||||||||
seq2  ----GGGGGAAGGGGGAAGGGG--------------------GAAAAGAA  76

seq1  GGGAAAGGGAGAAGGGGGCAAAGAAGGGG-AAAGGAAGGGAGAGCTCCCC  149
      ||||||||||||||||||||||||||||| |||||||||| |||||||| 
seq2  GGGAAAGGGAGAAGGGGGCAAAGAAGGGGAAAAGGAAGGGGGAGCTCCCT  126

seq1  GGATGACTTACAGCAAATGCCAAACAACAGGTGTTGAGGTTTGGTCGGTT  199
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GGATGACTTACAGCAAA--CCAAACAACAGGTGTTGAGGTTTGGTCGGTT  174

seq1  GCTCTGTTTTATAATAGTAAATACTGCCCCCCCCCCAAGGTCTGGTTGCC  249
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  GCTCTGTTTTATAATAGTAAATACTG----CCCCCCAAGGTCTGGTTGCC  220

seq1  CACAGGGACAAGGAAATCTTAACATACACCAAGTGATGCTATGTAACCTT  299
      ||||||||||||| | |||| |||||||||||||||||||||||||||||
seq2  CACAGGGACAAGGTAGTCTTTACATACACCAAGTGATGCTATGTAACCTT  270

seq1  GCTCTTTAATTTAATC  315
       ||||||||||||| |
seq2  TCTCTTTAATTTAAAC  286