BAC Information

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BAC

Clone NameB6Ng01-064P04
Chromosome13 (Build37)
Map Location 24,363,669 - 24,522,685
singlet/doubletdoublet
Overlap geneLrrc16, LOC100042017, Cmah
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064P04.bB6Ng01-064P04.g
ACCDH884585DH884586
length1,163949
definitionDH884585|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P04, 5' end.DH884586|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,521,512 - 24,522,685)(24,363,669 - 24,364,645)
sequence
gaattctcatcctcaactacatagtgagttcaaggccagcctgaacatca
taagatcctgtctaagaaacaaagcaacaacccaaagatcccactgttgc
cattgttatcttaggagttgggtatgtgacttctttacctcaggtggtct
gagtgcatgtggctgatataaatgaggtctgctttgcacagcctctccaa
ccagtcagatggaggctcatgtagcaaccaccatcctcgggcaaaagcag
ggccaattaaccaagggtcaaataccattcgcttgtctcccaacttgagg
tccatgcaggcatgagtgagatatgttatctgttagaagagagtgaaatt
cctgttatggcttggtaaccagcaatggagagcaaggctagggctgtttc
tctgacaaggtcaagccagctctggctcaactacaactacagacacacac
tgacagaacacgacaccctccacagactgtcagacttggactctagtgcc
tgctgcttcatgtcaaatcaacaatgcactagattttactttcttcaaac
cagctccaacgtgtttaccagtgagcgatgttagtgcaagcactggggga
cttagcatgctagtgtggctttgaggaatattgactacacgattcctaat
cagtttggtgggttggcacagctgggcagactggactgaagtcaggctag
ctgggctctacattacccatttactcattctataggttgccaagagcttc
tgagaatgggcatcaacaatgattttcagacaggcgcaggtaggggaatt
ccagacctattcctcacccccccaccctcctgcctgtcacatccacagat
aaagaatacacagaggagcagagatacagcaacaggaatctagtgtgaag
agccaggaacagccaggaaacaaatgagttattagtattcctgttctgag
tggagtttcaaaagaaaaaaataaacccctgctcaaatgcaaagaacttt
ctaaaaaacagaaaaaaatatttaatttgctgttggcttcccaaactctg
agatgttcttctcagaagtgcctctgaagatagaacttgattaaaaaatc
ggaagatcctcagagtgagggccaaaaatttcactgttatctgctacagt
gggaaggcagctc
gaattctctagaagtgaatattcagttagcaaatgactgaaaaagagtct
aagacacacagagtcacttactaaaaataactcctaaaaaccaaagaggc
atctctgcaaaagaaggactggctctccaccatggccacagagaccacat
tcccactaggacccagggactgagggactgtcctctagaagagcactcag
aaggaaagctcaactattgtagtctttaaacctccaaagccctggcctgt
actacccccgtttgtaacattgggttctctgaccaagtctgaagccctag
tctactttattctttaaaatgcacagaagtatactcatccctccggagct
gaagagatggcttagcactgaacagcaccggctgttcttctaaaggatcc
aagttcagttcccagcacccacatggctgttcctagtagtctctaactcc
agttcttggggatctaatgtcctcttctaaccttttcaggtaccagtcac
acatatatatatgcagggaaaacactcatgcttattaaaagataggaata
ataaaaaaataatttaaaaataaaatttcagaaaggatattaatgtccct
ggaagtccaaagttgagactgatttattactaacaccctggttgccaaat
ttataaagcacagaattgctttcattctaagacaccatagcctgttgctt
tctaacgatgccattcataagtgcaccagctcttggcctaaaaacaatct
ttgcccctcagtggagcatcagtacaggattaagataacatttttggtca
gtgacaaaggagaggcaaggaccttggttatgaagcatctgataaagtat
taagtttcacggatgcctgccagttgtaatacatgtgcaaatcccaaagc
aaccaatgatcgctaacgttaacgacccagctcattcagaaagcattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24521512_24522685
seq2: B6Ng01-064P04.b_50_1212 (reverse)

seq1  GAGCTGCATTCCCACTGTAGCAGATAACAAGTTGGATATTTTTGCCCCTC  50
      ||||||| |||||||||||||||||||| |||  || ||||||| |||||
seq2  GAGCTGCCTTCCCACTGTAGCAGATAAC-AGT--GAAATTTTTGGCCCTC  47

seq1  ATCCTGA-GATCTTCCCGAATCTTTTATACAGTTTCTATCTTCAGA-GCA  98
      |  |||| ||||||||   || |||||  ||  ||||||||||||| |||
seq2  ACTCTGAGGATCTTCC--GATTTTTTAATCAAGTTCTATCTTCAGAGGCA  95

seq1  CTTTCTGAGAAGAACACCTCAGAAGTTTGGGGAAGACAAAAAAGCAAAAT  148
      | |||||||||||||| ||||| ||||| |||||| |  || ||| ||||
seq2  C-TTCTGAGAAGAACATCTCAG-AGTTT-GGGAAGCC--AACAGC-AAAT  139

seq1  TAAATATTTTTTTTCTGTATGTTTAGAAAGTTCTGTGCATTTGGGCAGGG  198
      |||||| ||||||||||| | ||||||||||||| |||||||| ||||||
seq2  TAAATA-TTTTTTTCTGT-TTTTTAGAAAGTTCTTTGCATTTGAGCAGGG  187

seq1  GTTTATTTTTTTTCTTTTGAAACTCCACTCAGAACAGGAATACTAATAAC  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTA-TTTTTTTCTTTTGAAACTCCACTCAGAACAGGAATACTAATAAC  236

seq1  TCATTTGTTTCCTGGCTGTTCCTGGCTCTTCACACTAGATTCCTGTTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTTCCTGGCTGTTCCTGGCTCTTCACACTAGATTCCTGTTGCT  286

seq1  GTATCTCTGCTCCTCTGTGTATTCTTTATCTGTGGATGTGACAGGCAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTGCTCCTCTGTGTATTCTTTATCTGTGGATGTGACAGGCAGGA  336

seq1  GGGT-GGGGGGTGAGGAATAGGTCTGGAATTCCCCTACCTGCGCCTGTCT  397
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGGGTGAGGAATAGGTCTGGAATTCCCCTACCTGCGCCTGTCT  386

seq1  GAAAATCATTGTTGATGCCCATTCTCAGAAGCTCTTGGCAACCTATAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCATTGTTGATGCCCATTCTCAGAAGCTCTTGGCAACCTATAGAA  436

seq1  TGAGTAAATGGGTAATGTAGAGCCCAGCTAGCCTGACTTCAGTCCAGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATGGGTAATGTAGAGCCCAGCTAGCCTGACTTCAGTCCAGTCT  486

seq1  GCCCAGCTGTGCCAACCCACCAAACTGATTAGGAATCGTGTAGTCAATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTGTGCCAACCCACCAAACTGATTAGGAATCGTGTAGTCAATAT  536

seq1  TCCTCAAAGCCACACTAGCATGCTAAGTCCCCCAGTGCTTGCACTAACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGCCACACTAGCATGCTAAGTCCCCCAGTGCTTGCACTAACAT  586

seq1  CGCTCACTGGTAAACACGTTGGAGCTGGTTTGAAGAAAGTAAAATCTAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACTGGTAAACACGTTGGAGCTGGTTTGAAGAAAGTAAAATCTAGT  636

seq1  GCATTGTTGATTTGACATGAAGCAGCAGGCACTAGAGTCCAAGTCTGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTGATTTGACATGAAGCAGCAGGCACTAGAGTCCAAGTCTGACA  686

seq1  GTCTGTGGAGGGTGTCGTGTTCTGTCAGTGTGTGTCTGTAGTTGTAGTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGAGGGTGTCGTGTTCTGTCAGTGTGTGTCTGTAGTTGTAGTTG  736

seq1  AGCCAGAGCTGGCTTGACCTTGTCAGAGAAACAGCCCTAGCCTTGCTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGCTGGCTTGACCTTGTCAGAGAAACAGCCCTAGCCTTGCTCTC  786

seq1  CATTGCTGGTTACCAAGCCATAACAGGAATTTCACTCTCTTCTAACAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGGTTACCAAGCCATAACAGGAATTTCACTCTCTTCTAACAGAT  836

seq1  AACATATCTCACTCATGCCTGCATGGACCTCAAGTTGGGAGACAAGCGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTCACTCATGCCTGCATGGACCTCAAGTTGGGAGACAAGCGAA  886

seq1  TGGTATTTGACCCTTGGTTAATTGGCCCTGCTTTTGCCCGAGGATGGTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTGACCCTTGGTTAATTGGCCCTGCTTTTGCCCGAGGATGGTGG  936

seq1  TTGCTACATGAGCCTCCATCTGACTGGTTGGAGAGGCTGTGCAAAGCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACATGAGCCTCCATCTGACTGGTTGGAGAGGCTGTGCAAAGCAGA  986

seq1  CCTCATTTATATCAGCCACATGCACTCAGACCACCTGAGGTAAAGAAGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTATATCAGCCACATGCACTCAGACCACCTGAGGTAAAGAAGTC  1036

seq1  ACATACCCAACTCCTAAGATAACAATGGCAACAGTGGGATCTTTGGGTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCAACTCCTAAGATAACAATGGCAACAGTGGGATCTTTGGGTTG  1086

seq1  TTGCTTTGTTTCTTAGACAGGATCTTATGATGTTCAGGCTGGCCTTGAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTTTCTTAGACAGGATCTTATGATGTTCAGGCTGGCCTTGAAC  1136

seq1  TCACTATGTAGTTGAGGATGAGAATTC  1174
      |||||||||||||||||||||||||||
seq2  TCACTATGTAGTTGAGGATGAGAATTC  1163

seq1: chr13_24363669_24364645
seq2: B6Ng01-064P04.g_68_1016

seq1  GAATTCTCTAGAAGTGAATATTCAGTTAGCAAATGACTGAAAAAGAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAAGTGAATATTCAGTTAGCAAATGACTGAAAAAGAGTCT  50

seq1  AAGACACACAGAGTCACTTACTAAAAATAACTCCTAAAAACCAAAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACAGAGTCACTTACTAAAAATAACTCCTAAAAACCAAAGAGGC  100

seq1  ATCTCTGCAAAAGAAGGACTGGCTCTCCACCATGGCCACAGAGACCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCAAAAGAAGGACTGGCTCTCCACCATGGCCACAGAGACCACAT  150

seq1  TCCCACTAGGACCCAGGGACTGAGGGACTGTCCTCTAGAAGAGCACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTAGGACCCAGGGACTGAGGGACTGTCCTCTAGAAGAGCACTCAG  200

seq1  AAGGAAAGCTCAACTATTGTAGTCTTTAAACCTCCAAAGCCCTGGCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCTCAACTATTGTAGTCTTTAAACCTCCAAAGCCCTGGCCTGT  250

seq1  ACTACCCCCGTTTGTAACATTGGGTTCTCTGACCAAGTCTGAAGCCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCCGTTTGTAACATTGGGTTCTCTGACCAAGTCTGAAGCCCTAG  300

seq1  TCTACTTTATTCTTTAAAATGCACAGAAGTATACTCATCCCTCCGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTATTCTTTAAAATGCACAGAAGTATACTCATCCCTCCGGAGCT  350

seq1  GAAGAGATGGCTTAGCACTGAACAGCACCGGCTGTTCTTCTAAAGGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGGCTTAGCACTGAACAGCACCGGCTGTTCTTCTAAAGGATCC  400

seq1  AAGTTCAGTTCCCAGCACCCACATGGCTGTTCCTAGTAGTCTCTAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTTCCCAGCACCCACATGGCTGTTCCTAGTAGTCTCTAACTCC  450

seq1  AGTTCTTGGGGATCTAATGTCCTCTTCTAACCTTTTCAGGTACCAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGGGGATCTAATGTCCTCTTCTAACCTTTTCAGGTACCAGTCAC  500

seq1  ACATATATATATGCAGGGAAAACACTCATGCTTATTAAAAGATAGGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATGCAGGGAAAACACTCATGCTTATTAAAAGATAGGAATA  550

seq1  ATAAAAAAATAATTTAAAAATAAAATTTCAGAAAGGATATTAATGTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATAATTTAAAAATAAAATTTCAGAAAGGATATTAATGTCCCT  600

seq1  GGAAGTCCAAAGTTGAGACTGATTTATTACTAACACCCTGGTTGCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCAAAGTTGAGACTGATTTATTACTAACACCCTGGTTGCCAAAT  650

seq1  TTATAAAAGCACAGAATTGCTTTCATTCTAAGACACCATAGCCTGTTGCT  700
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAT-AAAGCACAGAATTGCTTTCATTCTAAGACACCATAGCCTGTTGCT  699

seq1  TTCTAACGATGCCATTCATAAGGTGCCACCAGCTCTTGGCCTTACAAACA  750
      ||||||||||||||||||||| ||| ||||||||||||||| || |||| 
seq2  TTCTAACGATGCCATTCATAA-GTG-CACCAGCTCTTGGCC-TAAAAAC-  745

seq1  AATCTCTGCCCCTCAGTGGAAGCATCAGGTACCAGGATTTAAGATTAACA  800
      ||||| ||||||||||||| ||||||| ||| ||||| |||||| |||||
seq2  AATCTTTGCCCCTCAGTGG-AGCATCA-GTA-CAGGA-TTAAGA-TAACA  790

seq1  TGTTTTGGTCAGTGACAAAAGAGAAGGCAAGGACCCTTGGTTAGTGAAGC  850
      | ||||||||||||||||| ||| ||||||||| ||||||||| ||||||
seq2  T-TTTTGGTCAGTGACAAAGGAG-AGGCAAGGA-CCTTGGTTA-TGAAGC  836

seq1  ATCATGATAAAGTATTAGGTTTCACGGGATGCCTGCCAGTTTGTAAATAC  900
      ||| ||||||||||||| ||||||| ||||||||||||| |||| |||||
seq2  ATC-TGATAAAGTATTAAGTTTCAC-GGATGCCTGCCAG-TTGT-AATAC  882

seq1  ATGTGCATAATTCCCAAAGCCAAGCATATGAATCGCTAACGGTTACAGCA  950
      ||||||  || |||||||| ||| || ||| |||||||||| | ||   |
seq2  ATGTGC--AAATCCCAAAG-CAACCA-ATG-ATCGCTAACGTTAAC--GA  925

seq1  CCCAGCTTCATTCAAGAAAGCAATTGA  977
      |||||| |||||| ||||||| |||||
seq2  CCCAGC-TCATTC-AGAAAGC-ATTGA  949