BAC Information

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BAC

Clone NameB6Ng01-065A19
Chromosome13 (Build37)
Map Location 96,996,031 - 97,159,924
singlet/doubletdoublet
Overlap geneLOC667582, 1200014M14Rik
Upstream genePde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
Downstream gene9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065A19.bB6Ng01-065A19.g
ACCDH884648DH884649
length1,0611,087
definitionDH884648|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A19, 5' end.DH884649|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,996,031 - 96,996,674)(97,158,832 - 97,159,924)
sequence
gaattctttgtttagctctgtaccctgtcctgagcttttgtccccgccca
gcaggaacgcacacaggacacagatccttggttactttatttcacaacat
aatgaggtagacaaagaaggctcagaaaagtgtgtggcttaaatacccta
aggcgtgatgtgtttaactaggactggtagcttaacccacgattctcatg
caccctggggataggctatagcccccaggggttgggctagtgccctggga
gatggactggtgccctggaaatgggctggtgactttttggcgggcttttg
ctcttagcacatgcgcacatagctattctttgtttaggtggcataaggca
ctgcggagccagcgccatctatgatggtaaatgttattgcggctctccac
agtaccccatttttaatagggttatttggttctctgaagtctaacttctt
gagttctttgaatatattggatattaaccctctattgtatgtaggattgg
taaagatctttccccaatttgttggttgccttttgtcctattgacagtgt
cctttgccttacagaagctttgtaattttatgaggtcccatttaatgaac
ccacacacttatggtcacttgatctttgatgaaggagctaaaaccatcca
gtggggaaaagacaacattttcaacaaatggtgttggttcaactgctggt
cagcatgtagaagaatgcaaattgactcattcctatctccttgtacaaag
ctcaaatacaagtggatcaaggacctccacataaaaccagatacacggaa
actaatagaagagaaagtggtgaagagccttgaatacatgggcacagggg
aaattttcctgaacaaaaaccaatagcctatctctagatcagaattgaca
atgggaccccttttccatttcaacagtaccataatgtatgtatcccaacc
tcagcccagatccctattaaacaacacactctggaaaccagatgtccttt
ctgtgatggttctagaccaagaatagaggttcaagatgctattccctctt
gttacctttct
gaattctgtggttacagaaggatagcggttatgtgactacgttggctact
cagcacccagctccgagcactggaattcacaatggctaggatgtgccttt
gcctgtattacaagcataggctggagatttagactgaggaggcattgacc
tcttggggtaatacgaaagaaatggggatggatgggattccccattgtgg
taaaagaactgctatcctgcagaccaaacacaactgcacacacttttaga
atataaacatatgtattttctagaaggatttttagattcaaacatgattt
caaaggagttcataatcctaacagaggactgctctgagaagaggaaccta
aaactgctagcttttaaggaacagtgaagtgtcaggagaaagatgggagg
cagccagaacaccggaattgtgtggagagcagtatgagggtcactggcca
gaagggggcaaggaaggcccccagcatgcagatcaggaggctgccttgac
acccgtgacagtttcagctgcccctggagcaggcctcaattatagtttgc
taagaaaacaattgagataaagacactgaagaagaagggagagatgcagg
gaaaaccacagaatagaaagccagggtgcagccagaattgtgcaaaggga
atttctcttttattcagcattggtatggttccagaggataagtaaactaa
gtctgagctgtgactgtctttcattaagccatgcagggaagataaaatag
gcatggatctgcatcgaagaatgaacacttcactagtctcaaatcaacca
ctgtggtaatttgatccgttttaattttaatacattttcccttatgactt
gtttgcagacctggtaggcaaccagagttgggaattgtggattatttagt
aacaaatgagctggtatgatcagacgcaaaattgtttcttaaaacatatt
gcgtcagaaagcgatcggacttttggaaaaatacgtaatctgccattatc
cctgctctttgcaaacagcagaagaatatacgtgaatacgaaacagtagc
attttctcagattttgtgtacatgaagatggtgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96996031_96996674
seq2: B6Ng01-065A19.b_482_1105

seq1  AGTCTAACTTCTTGAGTTCTTTGAATATATTGGATATTAACCCTCTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACTTCTTGAGTTCTTTGAATATATTGGATATTAACCCTCTATTG  50

seq1  TATGTAGGATTGGTAAAGATCTTTCCCCAATTTGTTGGTTGCCTTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGATTGGTAAAGATCTTTCCCCAATTTGTTGGTTGCCTTTTGTC  100

seq1  CTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTAATTTTATGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTAATTTTATGAGGTC  150

seq1  CCATTTAATGAACCCACACACTTATGGTCACTTGATCTTTGATGAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAATGAACCCACACACTTATGGTCACTTGATCTTTGATGAAGGAG  200

seq1  CTAAAACCATCCAGTGGGGAAAAGACAACATTTTCAACAAATGGTGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATCCAGTGGGGAAAAGACAACATTTTCAACAAATGGTGTTGG  250

seq1  TTCAACTGCTGGTCAGCATGTAGAAGAATGCAAATTGACTCATTCCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGCTGGTCAGCATGTAGAAGAATGCAAATTGACTCATTCCTATC  300

seq1  TCCTTGTACAAAGCTCAAATACAAGTGGATCAAGGACCTCCACATAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACAAAGCTCAAATACAAGTGGATCAAGGACCTCCACATAAAAC  350

seq1  CAGATACACGGAAACTAATAGAAGAGAAAGTGGTGAAGAGCCTTGAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACGGAAACTAATAGAAGAGAAAGTGGTGAAGAGCCTTGAATAC  400

seq1  ATGGGCACAGGGGAAATTTTCCTGAACAAAACACCAATAGCCTATTCTCT  450
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ATGGGCACAGGGGAAATTTTCCTGAACAAAA-ACCAATAGCCTA-TCTCT  448

seq1  AAGATCAAGAATTGACAAATGGGACCCCTTTTTCCATTTTCACAGTAACC  500
       ||||| ||||||||| ||||||||||| ||||||||||  ||||| |||
seq2  -AGATC-AGAATTGAC-AATGGGACCCC-TTTTCCATTTCAACAGT-ACC  493

seq1  ATAATGTATGTATCCCAACCTCAGCCCAGAATCCCTAATTAAAACAAACA  550
      ||||||||||||||||||||||||||||| |||||| ||||||   ||||
seq2  ATAATGTATGTATCCCAACCTCAGCCCAG-ATCCCT-ATTAAA--CAACA  539

seq1  CAACTCCTGGAAACCAGAATGTCCTTTCTGTGATGGTTCTAAGAACCAGA  600
      | ||| ||||||||||| |||||||||||||||||||||| ||| | |||
seq2  C-ACT-CTGGAAACCAG-ATGTCCTTTCTGTGATGGTTCT-AGACCAAGA  585

seq1  GATAGAGGTTTCAAGATGCTAATTCCCTCTTTGTTACCTCTTCT  644
       ||||||| ||||||||||| |||||||| ||||||||| ||||
seq2  -ATAGAGG-TTCAAGATGCT-ATTCCCTC-TTGTTACCT-TTCT  624

seq1: chr13_97158832_97159924
seq2: B6Ng01-065A19.g_69_1155 (reverse)

seq1  AAAGCACCATTCTTC-TGAACCCAGAAACTGAAGAAATGCTACTGTTTTC  49
      ||||||||| ||||| || || || || ||||  ||||||||||| ||||
seq2  AAAGCACCA-TCTTCATGTACACAAAATCTGAGAAAATGCTACTG-TTTC  48

seq1  GT-CTCACGTTATTTCTCCTGCCTGTTTGCAAAGAGCAGGGATAAATGGC  98
      ||  ||||||   |||| ||| ||||||||||||||||||||| ||||||
seq2  GTATTCACGTATATTCTTCTG-CTGTTTGCAAAGAGCAGGGAT-AATGGC  96

seq1  AGATAACGTA-TTTTCCAAAAGTCCGATCGCTTTCTGACCGCAATATGTT  147
      |||| ||||| ||||||||||||||||||||||||||| ||||||||| |
seq2  AGATTACGTATTTTTCCAAAAGTCCGATCGCTTTCTGA-CGCAATATG-T  144

seq1  TTTAAGAAACAATTTTGGCGTCTGATCATACCAGCTCATTTGTTACTAAA  197
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TTTAAGAAACAATTTT-GCGTCTGATCATACCAGCTCATTTGTTACT-AA  192

seq1  ATAATCCACAATTCCCAACTCTGGTTGCCTACCAGGTCTGCAAACAAGTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCACAATTCCCAACTCTGGTTGCCTACCAGGTCTGCAAACAAGTC  242

seq1  ATAAGGGAAAATGTAATTAAAATTAAAACGGATCAAATTACCACAGTGGT  297
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAAATGT-ATTAAAATTAAAACGGATCAAATTACCACAGTGGT  291

seq1  TGATTTGAGACTAGTGAAGTGTTCATTCTTCGATGCAGATCCATGCCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAGACTAGTGAAGTGTTCATTCTTCGATGCAGATCCATGCCTAT  341

seq1  TTTATCTTCCCTGCATGGCTTAATGAAAGACAGTCACAGCTCAGACTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCCCTGCATGGCTTAATGAAAGACAGTCACAGCTCAGACTTAG  391

seq1  TTTACTTATCCTCTGGAACCATACCAATGCTGAATAAAAGAGAAATTCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATCCTCTGGAACCATACCAATGCTGAATAAAAGAGAAATTCCC  441

seq1  TTTGCACAATTCTGGCTGCACCCTGGCTTTCTATTCTGTGGTTTTCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAATTCTGGCTGCACCCTGGCTTTCTATTCTGTGGTTTTCCCTG  491

seq1  CATCTCTCCCTTCTTCTTCAGTGTCTTTATCTCAATTGTTTTCTTAGCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCCTTCTTCTTCAGTGTCTTTATCTCAATTGTTTTCTTAGCAA  541

seq1  ACTATAATTGAGGCCTGCTCCAGGGGCAGCTGAAACTGTCACGGGTGTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTGAGGCCTGCTCCAGGGGCAGCTGAAACTGTCACGGGTGTCA  591

seq1  AGGCAGCCTCCTGATCTGCATGCTGGGGGCCTTCCTTGCCCCCTTCTGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTCCTGATCTGCATGCTGGGGGCCTTCCTTGCCCCCTTCTGGC  641

seq1  CAGTGACCCTCATACTGCTCTCCACACAATTCCGGTGTTCTGGCTGCCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCTCATACTGCTCTCCACACAATTCCGGTGTTCTGGCTGCCTC  691

seq1  CCATCTTTCTCCTGACACTTCACTGTTCCTTAAAAGCTAGCAGTTTTAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTCTCCTGACACTTCACTGTTCCTTAAAAGCTAGCAGTTTTAGG  741

seq1  TTCCTCTTCTCAGAGCAGTCCTCTGTTAGGATTATGAACTCCTTTGAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCTCAGAGCAGTCCTCTGTTAGGATTATGAACTCCTTTGAAAT  791

seq1  CATGTTTGAATCTAAAAATCCTTCTAGAAAATACATATGTTTATATTCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGAATCTAAAAATCCTTCTAGAAAATACATATGTTTATATTCTA  841

seq1  AAAGTGTGTGCAGTTGTGTTTGGTCTGCAGGATAGCAGTTCTTTTACCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGTGCAGTTGTGTTTGGTCTGCAGGATAGCAGTTCTTTTACCAC  891

seq1  AATGGGGAATCCCATCCATCCCCATTTCTTTCGTATTACCCCAAGAGGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAATCCCATCCATCCCCATTTCTTTCGTATTACCCCAAGAGGTC  941

seq1  AATGCCTCCTCAGTCTAAATCTCCAGCCTATGCTTGTAATACAGGCAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCCTCAGTCTAAATCTCCAGCCTATGCTTGTAATACAGGCAAAG  991

seq1  GCACATCCTAGCCATTGTGAATTCCAGTGCTCGGAGCTGGGTGCTGAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCTAGCCATTGTGAATTCCAGTGCTCGGAGCTGGGTGCTGAGTA  1041

seq1  GCCAACGTAGTCACATAACCGCTATCCTTCTGTAACCACAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGTAGTCACATAACCGCTATCCTTCTGTAACCACAGAATTC  1087