BAC Information

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BAC

Clone NameB6Ng01-065C23
Chromosome13 (Build37)
Map Location 24,624,872 - 24,768,325
singlet/doubletdoublet
Overlap gene5830431A10Rik, 6330500D04Rik
Upstream geneHist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065C23.bB6Ng01-065C23.g
ACCDH884737DH884738
length1,109828
definitionDH884737|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C23, 5' end.DH884738|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,767,206 - 24,768,325)(24,624,872 - 24,625,694)
sequence
gaattcttcaagaatagcatgtgcttttaaccactgagtcatctctctag
ccccaggattaagcatttttaaaaaattttaaaaatgaggttatttacag
aaaacaattttgagaatgcatggatcaagagtagagaaaattcaggtaag
ttgttcacacttgtaagactgaagtccaaccgtgccagttaatcagactc
cacgttcttgtttctccccatctctcttcacccttccccttccttcctta
attcctctctttcttctagattttatttatctatattttatgtaactagg
tgttttgcttgcatgtatacctgtgtactacatacatgcctggtatttat
ggaagccagaagaaggtgtcagatcccccggaactggagttacaattgtt
tgtgagccagcctgtcagggctgggaactgaacctgggtccgcagcacga
gcagccaatgctcttaactatggtgccatttctccagccccaaggctttc
atttctatgttcagtggaggtatctagttaaagccacccagtacccacgt
tatactcagggtgggcacgcactgggcagtaactgagagcagaaatacag
aagcagagacaagagcagcacgggttaccttactaatgtgaaactccagg
cgtcgcatgtatctctcaatcgttttaatttgctggaattaaaaggagaa
gcttgaagaacgagcagccattcagagtgcgattgattaggctcctgaga
gaacctgcagcagcctgccttccacataaggcccacaagcacttcctgct
ttccttttccttctgccttggcactatttagagggtcctaatgttaattt
gaaaaatatttttcaaacactgactagcctgagagatgagcttgaactaa
ttaattatggtcatcccatggtaaacaccaaggtggccagtccatctgat
gtctggtggagcagtatcattcggacggatctaatgtcttcatatcctgc
atgttctaactgagctctgcacactgaatatacagttgactctagagcct
ggggtacgccttataattgtatttgtgcatggtgacactgtccgttggct
cacaagata
gaattccaataatttctgaaatggccacaaatatacctcttctgtatata
aacctatatgaattggtgctttatctataaatctctatttaggcaagcta
tataaattggcactcttacattgatgatgataaaacaaaatatcaatcta
ctctgaaaaatattcaacgtactctgtatgtgtaggctcaggtatgtacc
aagatttaattttttctatgaaagtaaacaagtacatcctggtccttagt
gtgcaaaatttcttttgtctctaataaatagtgaaaaacaatggattagt
ttgaagtaaggttttttttaaatgttttattaccagttaatgtttggtgc
ttacacttgccttctatacctgtgtccccgggatcaggtaaaaacatctt
gggagggaaaggtgagtggagaagttttagaagttctagaatagacacgc
ctctgagagggaagaagtggagcaggtccttccacagctgcttctgttgc
tgtagttgctgtgcttggagctctttttcaagacaagggctcatgtactc
catccaggccagcctcaaactcacgatgtagctgagggtgactctgaatg
tctacacggtgagtttcagaacaggaagactctatcttgaaaaataaatt
ttaaaataaataaataaataatagtatttctagttagcttacaaaaataa
taggctccaccatgaggattttcatatgtatctattattggtataatttc
cctactttccttctattggtccatgccttgttcaaaacagtttccccctg
ctggttttaatggtacatatgcactcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24767206_24768325
seq2: B6Ng01-065C23.b_48_1156 (reverse)

seq1  TATC-TGTGAGCCCAAACGGACAGCTGTCACAATGCACAAATAACAATTA  49
      |||| ||||||||  ||||||||| |||||| |||||||||| |||||||
seq2  TATCTTGTGAGCC--AACGGACAG-TGTCACCATGCACAAAT-ACAATTA  46

seq1  TAAAGCGTACCCCA-GCTCTAGAGTCAACTGTATAATTCAGTGTGCAGAA  98
      ||| |||||||||| ||||||||||||||||||| ||||||||||||| |
seq2  TAAGGCGTACCCCAGGCTCTAGAGTCAACTGTAT-ATTCAGTGTGCAG-A  94

seq1  GCTCAGTTTAGAACATGCAGGATATGAAGACATTTAGATACCGTCCGAAT  148
      |||||| ||||||||||||||||||||||||| |||||| ||||||||||
seq2  GCTCAG-TTAGAACATGCAGGATATGAAGACA-TTAGAT-CCGTCCGAAT  141

seq1  GATACTGCTCCACCAGACATCAGATGGACTGGCCACCTTGGTGTTTACCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGCTCCACCAGACATCAGATGGACTGGCCACCTTGGTGTTTACCA  191

seq1  TGGGATGACCATAATTAATTAGTTCAAGCTCATCTCTCAGGCTAGTCAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGACCATAATTAATTAGTTCAAGCTCATCTCTCAGGCTAGTCAGT  241

seq1  GTTTTGAAAAATATTTTTCAAATTAACATTAGGACACCTCTAAAATAGTG  298
      | ||||||||||||||||||||||||||||||||| ||||| ||||||| 
seq2  G-TTTGAAAAATATTTTTCAAATTAACATTAGGAC-CCTCT-AAATAGT-  287

seq1  GCCAAGGCAGAAGGAAAAGGAAAGCAGGAAGTGCTTGTGGGCCTTATGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCAGAAGGAAAAGGAAAGCAGGAAGTGCTTGTGGGCCTTATGTG  337

seq1  GAAGGCAGGCTGCTGCAGGTTCTCTCAGGAGCCTAATCAATCGCACTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGCTGCTGCAGGTTCTCTCAGGAGCCTAATCAATCGCACTCTG  387

seq1  AATGGCTGCTCGTTCTTCAAGCTTCTCCTTTTAATTCCAGCAAATTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGCTCGTTCTTCAAGCTTCTCCTTTTAATTCCAGCAAATTAAAA  437

seq1  CGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAACC  487

seq1  CGTGCTGCTCTTGTCTCTGCTTCTGTATTTCTGCTCTCAGTTACTGCCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGCTCTTGTCTCTGCTTCTGTATTTCTGCTCTCAGTTACTGCCCA  537

seq1  GTGCGTGCCCACCCTGAGTATAACGTGGGTACTGGGTGGCTTTAACTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGCCCACCCTGAGTATAACGTGGGTACTGGGTGGCTTTAACTAGA  587

seq1  TACCTCCACTGAACATAGAAATGAAAGCCTTGGGGCTGGAGAAATGGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCACTGAACATAGAAATGAAAGCCTTGGGGCTGGAGAAATGGCAC  637

seq1  CATAGTTAAGAGCATTGGCTGCTCGTGCTGCGGACCCAGGTTCAGTTCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAAGAGCATTGGCTGCTCGTGCTGCGGACCCAGGTTCAGTTCCC  687

seq1  AGCCCTGACAGGCTGGCTCACAAACAATTGTAACTCCAGTTCCGGGGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGACAGGCTGGCTCACAAACAATTGTAACTCCAGTTCCGGGGGAT  737

seq1  CTGACACCTTCTTCTGGCTTCCATAAATACCAGGCATGTATGTAGTACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCTTCTTCTGGCTTCCATAAATACCAGGCATGTATGTAGTACAC  787

seq1  AGGTATACATGCAAGCAAAACACCTAGTTACATAAAATATAGATAAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACATGCAAGCAAAACACCTAGTTACATAAAATATAGATAAATAA  837

seq1  AATCTAGAAGAAAGAGAGGAATTAAGGAAGGAAGGGGAAGGGTGAAGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAGAAAGAGAGGAATTAAGGAAGGAAGGGGAAGGGTGAAGAGA  887

seq1  GATGGGGAGAAACAAGAACGTGGAGTCTGATTAACTGGCACGGTTGGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAGAAACAAGAACGTGGAGTCTGATTAACTGGCACGGTTGGACT  937

seq1  TCAGTCTTACAAGTGTGAACAACTTACCTGAATTTTCTCTACTCTTGATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTACAAGTGTGAACAACTTACCTGAATTTTCTCTACTCTTGATC  987

seq1  CATGCATTCTCAAAATTGTTTTCTGTAAATAACCTCATTTTTAAAATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTCTCAAAATTGTTTTCTGTAAATAACCTCATTTTTAAAATTTT  1037

seq1  TTAAAAATGCTTAATCCTGGGGCTAGAGAGATGACTCAGTGGTTAAAAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGCTTAATCCTGGGGCTAGAGAGATGACTCAGTGGTTAAAAGC  1087

seq1  ACATGCTATTCTTGAAGAATTC  1120
      ||||||||||||||||||||||
seq2  ACATGCTATTCTTGAAGAATTC  1109

seq1: chr13_24624872_24625694
seq2: B6Ng01-065C23.g_69_896

seq1  GAATTCCAATAATTTCTGAAATGGCCACAAATATACCTCTTCTGTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAATTTCTGAAATGGCCACAAATATACCTCTTCTGTATATA  50

seq1  AACCTATATGAATTGGTGCTTTATCTATAAATCTCTATTTAGGCAAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATGAATTGGTGCTTTATCTATAAATCTCTATTTAGGCAAGCTA  100

seq1  TATAAATTGGCACTCTTACATTGATGATGATAAAACAAAATATCAATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGGCACTCTTACATTGATGATGATAAAACAAAATATCAATCTA  150

seq1  CTCTGAAAAATATTCAACGTACTCTGTATGTGTAGGCTCAGGTATGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAAATATTCAACGTACTCTGTATGTGTAGGCTCAGGTATGTACC  200

seq1  AAGATTTAATTTTTTCTATGAAAGTAAACAAGTACATCCTGGTCCTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAATTTTTTCTATGAAAGTAAACAAGTACATCCTGGTCCTTAGT  250

seq1  GTGCAAAATTTCTTTTGTCTCTAATAAATAGTGAAAAACAATGGATTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAATTTCTTTTGTCTCTAATAAATAGTGAAAAACAATGGATTAGT  300

seq1  TTGAAGTAAGGTTTTTTTTAAATGTTTTATTACCAGTTAATGTTTGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAAGGTTTTTTTTAAATGTTTTATTACCAGTTAATGTTTGGTGC  350

seq1  TTACACTTGCCTTCTATACCTGTGTCCCCGGGATCAGGTAAAAACATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTGCCTTCTATACCTGTGTCCCCGGGATCAGGTAAAAACATCTT  400

seq1  GGGAGGGAAAGGTGAGTGGAGAAGTTTTAGAAGTTCTAGAATAGACACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAAAGGTGAGTGGAGAAGTTTTAGAAGTTCTAGAATAGACACGC  450

seq1  CTCTGAGAGGGAAGAAGTGGAGCAGGTCCTTCCACAGCTGCTTCTGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGGGAAGAAGTGGAGCAGGTCCTTCCACAGCTGCTTCTGTTGC  500

seq1  TGTAGTTGCTGTGCTTGGAGCTC-TTTTCAAGACAAGGGCTCATGTACTC  549
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTAGTTGCTGTGCTTGGAGCTCTTTTTCAAGACAAGGGCTCATGTACTC  550

seq1  CATCCAGGCCAGCCTCAAACTCACGATGTAGCTGAGGGTGACTCTGAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGCCAGCCTCAAACTCACGATGTAGCTGAGGGTGACTCTGAATG  600

seq1  TCTACACGGTGAGTTTCAGAACAGGAAGACTCTATCTTGAAAAATAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACGGTGAGTTTCAGAACAGGAAGACTCTATCTTGAAAAATAAATT  650

seq1  TTAAAATAAATAAATAAATAATAGTATTTCTAGTTAGCTTAC-AAAATAA  698
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAAATAAATAAATAAATAATAGTATTTCTAGTTAGCTTACAAAAATAA  700

seq1  TAGGCTCCACCATGAGGATTTTCATATGTATCTATTATT-GTATAATTTC  747
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGGCTCCACCATGAGGATTTTCATATGTATCTATTATTGGTATAATTTC  750

seq1  CCTACTTTCCTTCTATTGGTCCATGCCTTGTTCAAAACAG-TTCCCCCTG  796
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTACTTTCCTTCTATTGGTCCATGCCTTGTTCAAAACAGTTTCCCCCTG  800

seq1  CTGGTTTT-ATGGTACATATGCACTCAT  823
      |||||||| |||||||||||||||||||
seq2  CTGGTTTTAATGGTACATATGCACTCAT  828