BAC Information

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BAC

Clone NameB6Ng01-065J12
Chromosome13 (Build37)
Map Location 49,699,147 - 49,700,343
singlet/doubletsinglet
Overlap geneCenpp
Upstream geneAW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Tes3-ps, Ecm2, Aspn, Omd
Downstream geneOgn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065J12.bB6Ng01-065J12.g
ACCDH885022DH885023
length1,1761,229
definitionDH885022|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J12, 5' end.DH885023|Mus musculus domesticus DNA, BAC clone: B6Ng01-065J12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatgtccccaaggatggctggaactaaaattctggtttcctga
ttccaaacacatgattttccttctaaatcttggaaataaagtaaaaaagc
agctggaaacaagattacagcatagcagctcaaagtcccaagtctctttc
ttgcatgctccaatattctacaaggatcttactctagttaaagtaactat
acttggtataactaagcagtgttagaagtagcatggcaccaggcacactc
ctttcatcactaagtgttcagactgtgaatatattagacactaaaagaaa
aaaagtaaaatcatagataaactattagggaaaaaaaagcatgttctcat
cctcccattgtaccataacccacgttcccttgtcagtaaagtacttacac
tctcatctctttcatgtgaacaagagatctatgttgacataaacacatga
gatttaagacagcaagcctgctataagttctctctcagaacatcggattt
aaaaagtcttaactatctagtaactcagtagttcttacaggtagttttaa
aatataattttttaatttatatttgtggcacaagtgcctaccacatagtg
cccgagggagtcagaagagggaactgggaccctggagtttgagttacagt
tgcctgtgatctgctcaacttgagtgttacaatcctaatttatgtccctt
ggaagagcagtaagtactcttagctgctaaactgtctctcctgctgcaaa
aaggtatcacccatttgacagctagagtgcatagcgaggtgataggtagc
ttttagttttcttttttttaaaggcttttgttttgtaattctttttataa
agtttctttagatttttaatagtttaaaaacatttatttatttaatgtat
atgaatatatgagtatggcattggatcccattacagatgtttgttagaca
ccatgtggttgctagaatttgactcagactctgaagaacagccagtactc
ttactgctgagcatctttccagcccttgttttgtaattctggaagcaggc
tctcattattgtataagccttggctagcttagaattaacaacaacaacac
aacacacaaacctgcctgactctgcttcagcctgggattaagacagggct
tactaactgacctttacagatcagga
gaattctggacgaaattcaagacagtctatcagaggtaaagcggggagag
agagtaggagcaaagaggaaacatggtgcaccaattaagcatacaggcct
ttccacgggtcttgaacccgaggaaaagttaatgtcagggaagaatacct
ggggagagattggaaggaaggagaaggaaaaagaaaagaaaaaagatcaa
tcagcagaggtttctaggagaaggaacctaaacccaccactagatgagtt
taagcggctagctcttagtagctcagaatcagatgaaggacttagctcct
ctgaagaaacggacttggtggaggaagcagttcgttataagggagaaagg
taccagcaagataaaaagcaagctactcagtccagaaaacagcaaaaagc
agctggcgaaagccagcttgctgcttggcctccggactgttggcttcagg
gtcctagtgcacctcagccctatgtgcagaggtaccattcagagccttat
gtgcagaggtaccattcagagccttatgtgcagaggtatcattcagattc
attcattccaaaagaggaacagagaaaagtgcagcaagcgttcccagttt
ttgaaggagctgagggagggcatgttcacgctccggtagagtgtatacag
attaaggagctcgcagaagcagttcgcaattatggagtcagcgctaattt
cactatagcacaagttgaaaggcttgcgaatcacgctatgactcctggtg
attggcagactgtagtaaaagctgcagcccccagtatgggaatgtatctt
gagtggaaagccttgtggcaggactcctgccagacacaggcaagggccaa
tgccaccatggaaggggaccaaagaacgtggacgtttgattacttacagg
tcaggacagcatgctgctaaccaaacagattgtcattggggagcgtacgc
tcagatctcagctgcgctgtaagcatgagcactctttagaggagagcaag
ggcattgaccagattactcaaggtgcaagattcttctcgactttgtggca
gaatgacgagcagcaggaggatatttggaaccaaagcagctatgcttagt
gacattgttttgaacaagctcacggagtgcatccgcataccttaaagaga
taaggtagacgtttaagtgcctgcctggagactcaatgcgaatgtgcagc
actctctgcggaagggctcggtactcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49699147_49700343
seq2: B6Ng01-065J12.b_47_1222

seq1  GAATTCCTATGTCCCCAAGGATGGCTGGAACTAAAATTCTGGTTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTCCCCAAGGATGGCTGGAACTAAAATTCTGGTTTCCTGA  50

seq1  TTCCAAACACATGATTTTCCTTCTAAATCTTGGAAATAAAGTAAAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACACATGATTTTCCTTCTAAATCTTGGAAATAAAGTAAAAAAGC  100

seq1  AGCTGGAAACAAGATTACAGCATAGCAGCTCAAAGTCCCAAGTCTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAACAAGATTACAGCATAGCAGCTCAAAGTCCCAAGTCTCTTTC  150

seq1  TTGCATGCTCCAATATTCTACAAGGATCTTACTCTAGTTAAAGTAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCTCCAATATTCTACAAGGATCTTACTCTAGTTAAAGTAACTAT  200

seq1  ACTTGGTATAACTAAGCAGTGTTAGAAGTAGCATGGCACCAGGCACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTATAACTAAGCAGTGTTAGAAGTAGCATGGCACCAGGCACACTC  250

seq1  CTTTCATCACTAAGTGTTCAGACTGTGAATATATTAGACACTAAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCACTAAGTGTTCAGACTGTGAATATATTAGACACTAAAAGAAA  300

seq1  AAAAGTAAAATCATAGATAAACTATTAGGGAAAAAAAAGCATGTTCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAATCATAGATAAACTATTAGGGAAAAAAAAGCATGTTCTCAT  350

seq1  CCTCCCATTGTACCATAACCCACGTTCCCTTGTCAGTAAAGTACTTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATTGTACCATAACCCACGTTCCCTTGTCAGTAAAGTACTTACAC  400

seq1  TCTCATCTCTTTCATGTGAACAAGAGATCTATGTTGACATAAACACATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCTTTCATGTGAACAAGAGATCTATGTTGACATAAACACATGA  450

seq1  GATTTAAGACAGCAAGCCTGCTATAAGTTCTCTCTCAGAACATCGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGACAGCAAGCCTGCTATAAGTTCTCTCTCAGAACATCGGATTT  500

seq1  AAAAAGTCTTAACTATCTAGTAACTCAGTAGTTCTTACAGGTAGTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTTAACTATCTAGTAACTCAGTAGTTCTTACAGGTAGTTTTAA  550

seq1  AATATAATTTTTTAATTTATATTTGTGGCACAAGTGCCTACCACATAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTTTTTAATTTATATTTGTGGCACAAGTGCCTACCACATAGTG  600

seq1  CCCGAGGGAGTCAGAAGAGGGAACTGGGACCCTGGAGTTTGAGTTACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGAGTCAGAAGAGGGAACTGGGACCCTGGAGTTTGAGTTACAGT  650

seq1  TGCCTGTGATCTGCTCAACTTGAGTGTTACAATCCTAATTTATGTCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGATCTGCTCAACTTGAGTGTTACAATCCTAATTTATGTCCCTT  700

seq1  GGAAGAGCAGTAAGTACTCTTAGCTGCTAAACTGTCTCTCCTGCTGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGTAAGTACTCTTAGCTGCTAAACTGTCTCTCCTGCTGCAAA  750

seq1  AAGGTATCACCCATTTGACAGCTAGAGTGCATAGCGAGGTGATAGGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATCACCCATTTGACAGCTAGAGTGCATAGCGAGGTGATAGGTAGC  800

seq1  TTTTAGGTTTTCTTTTTTTTAAAGGCTTTTGTTTTGTAATTCTTTTTATA  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTA-GTTTTCTTTTTTTTAAAGGCTTTTGTTTTGTAATTCTTTTTATA  849

seq1  AAGTTTCTTTAGAATTTTTAATAGTTTAAAAACATTTATTTATTTAATGT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTTAG-ATTTTTAATAGTTTAAAAACATTTATTTATTTAATGT  898

seq1  ATATGAATATATGAGTATGGCATTGGATCCCATTACAGATGTTTGTTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATATATGAGTATGGCATTGGATCCCATTACAGATGTTTGTTAGA  948

seq1  CACCATGTGGTTGCTAGAATTTGAACTCAGGACCTCTGAAGAACAGCCAG  1000
      ||||||||||||||||||||||| ||||||   |||||||||||||||||
seq2  CACCATGTGGTTGCTAGAATTTG-ACTCAG--ACTCTGAAGAACAGCCAG  995

seq1  TACTCTTAACTGCTGAGGCATCTTTCCAGCCCTTGTTTTGTAATTCTGGA  1050
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TACTCTT-ACTGCTGA-GCATCTTTCCAGCCCTTGTTTTGTAATTCTGGA  1043

seq1  GACAGGCTCTCATTA-TGTAT-AGCCTTGGCTAGCTTAGAATTAAACAAA  1098
        ||||||||||||| ||||| ||||||||||||||||||||||      
seq2  AGCAGGCTCTCATTATTGTATAAGCCTTGGCTAGCTTAGAATTA------  1087

seq1  CAAAACAACAACAACAACA-ACAAACCTGCCTGACTCTGCCTTCCAAGCC  1147
       | ||||||||| |||||| ||||||||||||||||||| ||||  ||||
seq2  -ACAACAACAAC-ACAACACACAAACCTGCCTGACTCTG-CTTC--AGCC  1132

seq1  TTGGGATTAAAGACAGGCTCTACCATAACTGACATTTAGCAGTATCAGGA  1197
       ||||||| ||||||||   |||  |||||||| |||| ||| |||||||
seq2  -TGGGATT-AAGACAGGGCTTAC--TAACTGACCTTTA-CAG-ATCAGGA  1176