BAC Information

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BAC

Clone NameB6Ng01-065K12
Chromosome4 (Build37)13 (Build37)
Map Location 146,983,733 - 146,984,86866,498,059 - 66,498,259
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
Downstream gene2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065K12.bB6Ng01-065K12.g
ACCDH885066DH885067
length1,1321,026
definitionDH885066|Mus musculus domesticus DNA, BAC clone: B6Ng01-065K12, 5' end.DH885067|Mus musculus domesticus DNA, BAC clone: B6Ng01-065K12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,983,733 - 146,984,868)(66,498,059 - 66,498,259)
sequence
gaattcaagggtcgatgtttatatgagctgcagggaaagtggtctcaatc
atgttccagttcctgtttgtccactagcccagtagctcctttgacctggg
agtttccatggcttcttggatgcagttactgtccctgctctggtaactga
aaattttcctagggcctaaattggcaacaactccagttgaagggaatttt
tacatggctgtgaaactgaaggaagtgttatccacccctgattccatacc
ttacaccttcaagactcctgttgacaaggagggttgtctgatcccactct
cttccttcagcccctcagtccctgttctgaattctcctgctacaaaacca
gtttcaaccaaggaatgatttttcccacctactcaaatgttttccatccc
caggctaccccatctcttgtcctgcagctgaagagttttctttccctgca
ggtactgccagagtcctggtgggcttccaaaaatatagtgaatgaaaggt
cttctaggaatgcccatcaggttcctgtagtgtggcttactgtgtatctt
aaaatggtcttgcaaaatatgtgaatgttccaaatccagtaagcctctgt
tcccatggtcttcaaacatgatatagttaatttccctaagccaatgactt
gcatctttctcaatctgaacatactttattccacataactccaacagtga
gtctacctgcacccattttgtaccccctctccatatgcttgctgtactgt
agacaataaatatgtgtataatgattatagaatgaagacaatcatatttc
atgaggggtaaaagtaaaatgtgttttcagtgagcacaatttaaaatttt
tccatgaactggaaatctctgcagatttgggatcatgatctctagtcatc
aagaaatagggactagatccattgaacatgtgaactggagtcatcagaga
ctttccaactggctgcaagttcccaactgttaaggtaattccagacttta
attgcctgtggtgtggacttcgaaatcctcgatacaacctaattgacaga
aattacctatgatcatttggagcaaggctccacactgcttctaaattagg
ggattcattaaaaacaatatctgtatcaacaa
gaattcattcagttagagaaaccttacaaatgtagtgaatgtgacaaatg
ttttactgagaaaaacagtctgagaaggcatcagagaattcatacaggag
agaaaccttataaatgcagtgaatgtgacaaatgctttacccgaaaatca
catcttagtattcatcagagaattcatacaggagagaaactgtacaaatg
cagtgaatgtgacaaatgctttacccaacaatgccatcttagtattcatc
agaaaattcattcaggagagaaccttacaaatgcaatgaatgcgacaaat
gctttagtgacaaacacagtctgagaaggcatcagagaattcatacagga
gagacaccttacaaatgtaatgaatgtgacaaatgctttacctgaaaatc
acatcttagtattcatcagagaattcatacaggagagaaaccttacaaat
gtaatgaatgtgacaaatcctttactgaaaatggctgtctgagaattcat
cagagaattcatacaggagagaaaccttacaaatgtaatgaatgtgacaa
atgctttacctgaaaatcacatcttagtattcatcagataattcatacag
aagagaaaccttacaaatgtagtgaatgtgacaaatcctttactgaaaat
ggctgtctgagaattcatcagagaattcatacaggagagaaaccttacaa
atgtagtgaatgtgacaaatgctttactaaaaaatccagtttgaggattc
atcagagatttcatacagggagagaaacctttacaaatgtagtgaatgtg
acaaatgttttattcaaaaatgcagtctgataattcatcagagaattcat
acaggagagaaaccttacaaatgtagtgaatgtgacaaagctttactgag
aaagtcatctgagaaggcatcagagaactcatacaggggagattcttaca
aatgtatgaatgtgacaaatgtttgcccagaatcctatcttgtttttatc
acagaatcatacattaaagaagcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146983733_146984868
seq2: B6Ng01-065K12.b_40_1171

seq1  GAATTCAAGGGTCGATGTTTATATGAGCTGCAGGGAAAGTGGTCTCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGTCGATGTTTATATGAGCTGCAGGGAAAGTGGTCTCAATC  50

seq1  ATGGTCCAGTTCCTGTTTGTCCACTAGCCCAGTAGCTCCTTTGACCTGGG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAGTTCCTGTTTGTCCACTAGCCCAGTAGCTCCTTTGACCTGGG  100

seq1  AGTTTCCATGGCTTCTTGGATGCAGTTACTGTCCCTGCTCTGGTAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATGGCTTCTTGGATGCAGTTACTGTCCCTGCTCTGGTAACTGA  150

seq1  AAATTTTCCTAGGGCCTAAATTGGCAACAACTCCAGTTGAAGGGAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCTAGGGCCTAAATTGGCAACAACTCCAGTTGAAGGGAATTTT  200

seq1  TACATGGCTGTGAAACTGAAGGAAGTGTTATCCACCCCTGATTCCATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCTGTGAAACTGAAGGAAGTGTTATCCACCCCTGATTCCATACC  250

seq1  TTACACCTTCAAGACTCCTGTTGACAAGGAGGGTTGTCTGATCCCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTTCAAGACTCCTGTTGACAAGGAGGGTTGTCTGATCCCACTCT  300

seq1  CTTCCTTCAGCCCCTCAGTCCCTGTTCTGAATTCTCCTGCTACAAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCAGCCCCTCAGTCCCTGTTCTGAATTCTCCTGCTACAAAACCA  350

seq1  GTTTCAACCAAGGA---ATTTTTCCCACCTACTCAAATGTTTTCCATCCC  397
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GTTTCAACCAAGGAATGATTTTTCCCACCTACTCAAATGTTTTCCATCCC  400

seq1  CAGGCTGCCCCATCTCTTGTCCTGCAGCTGAAGAGTTTTCTTTCCCTGCA  447
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACCCCATCTCTTGTCCTGCAGCTGAAGAGTTTTCTTTCCCTGCA  450

seq1  GGTACTGCCAGAGTCCTGGTGGGCTTCCAAAAATATAGTGAATGAAAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCCAGAGTCCTGGTGGGCTTCCAAAAATATAGTGAATGAAAGGT  500

seq1  CTTCTAGGAATGCCCATCAGGTTCCTGTAGTGTGGCTTACTGTGTATCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGAATGCCCATCAGGTTCCTGTAGTGTGGCTTACTGTGTATCTT  550

seq1  AAAATGGTCTTGCAAAATATGTGAATGTTCCAAATCCAGTAAGCCTCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTCTTGCAAAATATGTGAATGTTCCAAATCCAGTAAGCCTCTGT  600

seq1  TCCCATGGTCTTCAAACATGATATAGTTAATTTCCCTAAGCCAATGACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTCTTCAAACATGATATAGTTAATTTCCCTAAGCCAATGACTT  650

seq1  GCATCTTTCTCAATCTGAACATACTTTATTCCACATAACTCCAACAGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCTCAATCTGAACATACTTTATTCCACATAACTCCAACAGTGA  700

seq1  GTCTACCTGCACCCATTTTGTACCCCCTCTCCATATGCTTGCTGTACTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCTGCACCCATTTTGTACCCCCTCTCCATATGCTTGCTGTACTGT  750

seq1  AGACAATAAATATGTGTATAATGATTATAGAATGAAGACAATCATATTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATAAATATGTGTATAATGATTATAGAATGAAGACAATCATATTTC  800

seq1  ATGAGGGGTAAAAAGTAAAATGTGTTTTCAGTGAGCACAATTTAAAATTT  847
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGGT-AAAAGTAAAATGTGTTTTCAGTGAGCACAATTTAAAATTT  849

seq1  TTCCATGAACTGGAAATCTTTGCAGATTTGGGATCATGATCTCTAAGTCA  897
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TTCCATGAACTGGAAATCTCTGCAGATTTGGGATCATGATCTCT-AGTCA  898

seq1  TCAAGAAATAGGGACTAGATCCATTGAACATGTGAACTGGAGTCATCAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATAGGGACTAGATCCATTGAACATGTGAACTGGAGTCATCAGA  948

seq1  GACTTTCCAACTGGCTGCAAGTTCCACACTGTTAAGGGTAATTCCAGACT  997
      |||||||||||||||||||||||||  |||||||| ||||||||||||| 
seq2  GACTTTCCAACTGGCTGCAAGTTCCCAACTGTTAA-GGTAATTCCAGAC-  996

seq1  TTTAATTGCCTGGTGTGTGGACTTCGAAATCCTCGATACAAC--AATTGA  1045
      ||||||||||||  ||||||||||||||||||||||||||||  ||||||
seq2  TTTAATTGCCTGTGGTGTGGACTTCGAAATCCTCGATACAACCTAATTGA  1046

seq1  CAGAAATTACCTATGATCATTTGAAAGCAAGGGCCTCCACTGCTTCTACA  1095
      |||||||||||||||||||||||  |||||||  |  ||||||||||| |
seq2  CAGAAATTACCTATGATCATTTG-GAGCAAGGCTCCACACTGCTTCTA-A  1094

seq1  ATTAGTGAGATTCTATTAACAACAAGATCCTGTATCAACAA  1136
      ||||| | ||||| ||||| ||||| || ||||||||||||
seq2  ATTAG-GGGATTC-ATTAAAAACAATAT-CTGTATCAACAA  1132

seq1: chr13_66498059_66498259
seq2: B6Ng01-065K12.g_163_530 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CACATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGA  50

seq1  --------------------------------------------------  0
                                                        
seq2  ATACTAAGATGTGATTTTCAGGTAAAGCATTTGTCACATTCATTACATTT  100

seq1  --------------------------------------------------  0
                                                        
seq2  GTAAGGTGTCTCTCCTGTATGAATTCTCTGATGCCTTCTCAGACTGTGTT  150

seq1  ------------------CACACTCATTGCATTTGTAAGGTT-TCTCTAA  31
                        | || ||||||||||||||||||| ||||   
seq2  TGTCACTAAAGCATTTGTCGCATTCATTGCATTTGTAAGGTTCTCTCCTG  200

seq1  AACGTGTGTTCCTTTAAGTATTTGGAGTGTAATGTGACATGCAAAGGCTT  81
      || |  | |||   | | || |  ||  | | |||     | ||||  ||
seq2  AATGAATTTTCTGATGAATACTAAGATGGCATTGT--TGGGTAAAGCATT  248

seq1  TAACACATTTATTACAATCACAGGGCTTCTCTCAACTATGTGCTCATTTA  131
      |  |||||| | | || |   |  | |||||||   ||||   ||  | |
seq2  TGTCACATTCACTGCATTTGTACAGTTTCTCTCCTGTATGAATTCTCTGA  298

seq1  TG--TACTTGGAGATGACCGTGATAT----GCAAAGGTTTTCTCATATCA  175
      ||  ||||   ||||    ||||| |    | ||||  ||| ||| ||  
seq2  TGAATACT--AAGAT----GTGATTTTCGGGTAAAGCATTTGTCACATTC  342

seq1  ATTACATTCATAAGGTTTCTCTCCTG  201
      | | |||| |||||||||||||||||
seq2  ACTGCATTTATAAGGTTTCTCTCCTG  368