BAC Information

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BAC

Clone NameB6Ng01-068C19
Chromosome13 (Build37)
Map Location 4,280,367 - 4,416,767
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
Downstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C19.bB6Ng01-068C19.g
ACCDH886840DH886841
length1,1071,018
definitionDH886840|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C19, 5' end.DH886841|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,415,647 - 4,416,767)(4,280,367 - 4,281,311)
sequence
gaattcaagaatgaatgagaaatcaaccaagaaaatgttaggaaatgaag
tgaagttgacagttttgatcaaaataatttaggtaaattggctcctttca
tgttttcccagctgcatggcatgactttccatgcctgggtgctctactgt
cctgttttcgattgatgctgacaagtagaatgacactgatctctggatgg
tatatactttgtgatgtcactagcttgtttctcattttggtgactgtaag
gaatgaatacttgatggtgtatgtcgtttcttgatttttttttttttcat
tttagagattagttttaatatccagatttgtttctggaatctgcaaagtt
ttctacatataagattatgctctttgtgacaaaatataatgctttttctc
cacaatgactaactttttttttttaaacagggacagacagtgaagggatt
gctccatctcatattgctgctgataatgtttcaggttcaactagaatttc
atctccttgatggaaaaatcccctggaaaattactcaactctcttctaag
aaccttagattaagatgccccagctaattttttgttaaaatacctgcttg
ttcaaacctcgaacttaagcaaactgcttatcttaactttgtaaaatctc
ctcctgcaatggccaagtgaggtatcagggtgtggattttgctttttaaa
aaatctctttaccttaaatgttcagtgctacacttgagtccaaaataccc
aagtagagtcccagatggcttaataaagacattttcaattgtatgtctga
gtgttctttttcttgtgggcatctgatagcacgtttaatatattttttgt
tacctaagagttctgtctagaacacactatatcatgttgattacttgttg
gaaattatcaacattgaattcatgtgcataatggcaattgtgggttttcc
attcgtgtagatgtttatatcagataagctctggctactcctgcactctg
atgtttatgcattatgagagatgataaatttatatagtgggtagtttcag
catggatcttctgtttccacttttcccctaggcagtatattttccattgt
ggaactt
gaattcatagcaaccactcttaaccactggaccatttcttcagtccctga
ttttagataaccataaataagatgctaaaatgcagattaatatttatagc
ttatgtctttgttcaacactcattaaagaactaaattgaatgagatttag
agtgggagaataaatttaaagtattggtgaaatagtttttttattccatt
aagcctagaatgcatagatttccactaaagcagaacatatgggacaggaa
tacataataatttttaatgtcaagttgtcatttcatgtgcattaaataac
aggtcaggctgaaatttgtaaaacttcattctttttcaaagaaacaatta
atgatgattaataacttttctgtatgctttccaatattctagaattaata
tctatcaacttggagtctgaagaagttgtttactaggaagtatatgagcg
gacagaagagattccttggctcttaagagcattatctatcttcgtggtct
aagcttccataccagaaacttcttcctggctcacaaaattctattataca
gggacctgatgccctcttctggcttccataagtagtacatgcatgtggtt
aacagacacgggcaggcaaaatacctattcacataaaaatacatcatcct
aaccccccctaaaaaaaagtcgacctcaaatttgtcttgcctaaaataag
tgcaggaacagagatagagcagagactgaggaaatatccaacctatgtct
ggcctaggttgagactcatcccatgggcaagcaccaatccctgacactat
tcatgatactctgctatgctttgcagatagaagcctagtagagctgtcct
ctaagacgcttcatccagcttggtgctcagggtgttttgtggaaaagttg
tggggagtattgagagactcagagaggatagggcctgtatagaagatcaa
cagggtcactgacctaaaccttagtggcttcagaggactgaaccaccaat
cagagagcagtctggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4415647_4416767
seq2: B6Ng01-068C19.b_45_1151 (reverse)

seq1  AAGTTCCACCAATGAAAATATACTGCACTAGGGGGAAAAGTGGGAAAACA  50
      ||||||||| |  ||||||||||||| ||| |||||||||||| || | |
seq2  AAGTTCCACAATGGAAAATATACTGC-CTA-GGGGAAAAGTGGAAACAGA  48

seq1  AGAAAGATCTCAATGCTGAAACCTTAACCACTATATAAAATTTATCATTC  100
      |||      || ||||||||||  || ||||||||| |||||||||| ||
seq2  AGA------TCCATGCTGAAAC--TACCCACTATAT-AAATTTATCA-TC  88

seq1  TCTCATAATGCAATAAAACATTCAGAGTGCAGGAGTAGCCAGAGCTTATC  150
      ||||||||||||   ||||| |||||||||||||||||||||||||||||
seq2  TCTCATAATGCA--TAAACA-TCAGAGTGCAGGAGTAGCCAGAGCTTATC  135

seq1  TGAATATAAACATCTACACGAATGGAAAACCCACAATTGCCATTATGCAC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-ATATAAACATCTACACGAATGGAAAACCCACAATTGCCATTATGCAC  184

seq1  ATTGAATTCATGTTTGAT-ATTTCC-ACAAGTAATCAACATGATATAGTG  248
      | ||||||||   ||||| |||||| ||||||||||||||||||||||||
seq2  A-TGAATTCAATGTTGATAATTTCCAACAAGTAATCAACATGATATAGTG  233

seq1  TGTTCTAGACAGAACTCTTAGGTAACAAAAAATATATTAAACGTGCTATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGACAGAACTCTTAGGTAACAAAAAATATATTAAACGTGCTATC  283

seq1  AGATGCCCACAAG-AAAAGAACACTCAGACATACAATTGAAAATGTCTTT  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCACAAGAAAAAGAACACTCAGACATACAATTGAAAATGTCTTT  333

seq1  ATTAAGCCATCTGGGACTCTACTTGGGTATTTTGGACTCAAGTGTAGCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCCATCTGGGACTCTACTTGGGTATTTTGGACTCAAGTGTAGCAC  383

seq1  TGAACATTTAAGGTAAAGAGATTTTTTAAAAAGCAAAATCCACACCCTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTAAGGTAAAGAGATTTTTTAAAAAGCAAAATCCACACCCTGA  433

seq1  TACCTCACTTGGCCATTGCAGGAGGAGATTTTACAAAGTTAAGATAAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACTTGGCCATTGCAGGAGGAGATTTTACAAAGTTAAGATAAGCA  483

seq1  GTTTGCTTAAGTTCGAGGTTTGAACAAGCAGGTATTTTAACAAAAAATTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTAAGTTCGAGGTTTGAACAAGCAGGTATTTTAACAAAAAATTA  533

seq1  GCTGGGGCATCTTAATCTAAGGTTCTTAGAAGAGAGTTGAGTAATTTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCATCTTAATCTAAGGTTCTTAGAAGAGAGTTGAGTAATTTTCC  583

seq1  AGGGGATTTTTCCATCAAGGAGATGAAATTCTAGTTGAACCTGAAACATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTTTCCATCAAGGAGATGAAATTCTAGTTGAACCTGAAACATT  633

seq1  ATCAGCAGCAATATGAGATGGAGCAATCCCTTCACTGTCTGTCCCTGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGCAATATGAGATGGAGCAATCCCTTCACTGTCTGTCCCTGTTT  683

seq1  AAAAAAAAAAAGTTAGTCATTGTGGAGAAAAAGCATTATATTTTGTCACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGTTAGTCATTGTGGAGAAAAAGCATTATATTTTGTCACA  733

seq1  AAGAGCATAATCTTATATGTAGAAAACTTTGCAGATTCCAGAAACAAATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATAATCTTATATGTAGAAAACTTTGCAGATTCCAGAAACAAATC  783

seq1  TGGATATTAAAACTAATCTCTAAAATGAAAAAAAAAAAAATCAAGAAACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTAAAACTAATCTCTAAAATGAAAAAAAAAAAAATCAAGAAACG  833

seq1  ACATACACCATCAAGTATTCATTCCTTACAGTCACCAAAATGAGAAACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACCATCAAGTATTCATTCCTTACAGTCACCAAAATGAGAAACAA  883

seq1  GCTAGTGACATCACAAAGTATATACCATCCAGAGATCAGTGTCATTCTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGACATCACAAAGTATATACCATCCAGAGATCAGTGTCATTCTAC  933

seq1  TTGTCAGCATCAATCGAAAACAGGACAGTAGAGCACCCAGGCATGGAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCATCAATCGAAAACAGGACAGTAGAGCACCCAGGCATGGAAAG  983

seq1  TCATGCCATGCAGCTGGGAAAACATGAAAGGAGCCAATTTACCTAAATTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCATGCAGCTGGGAAAACATGAAAGGAGCCAATTTACCTAAATTA  1033

seq1  TTTTGATCAAAACTGTCAACTTCACTTCATTTCCTAACATTTTCTTGGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCAAAACTGTCAACTTCACTTCATTTCCTAACATTTTCTTGGTT  1083

seq1  GATTTCTCATTCATTCTTGAATTC  1121
      ||||||||||||||||||||||||
seq2  GATTTCTCATTCATTCTTGAATTC  1107

seq1: chr13_4280367_4281311
seq2: B6Ng01-068C19.g_69_1013

seq1  GAATTCATAGCAACCACTCTTAACCACTGGACCATTTCTTCAGTCCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCAACCACTCTTAACCACTGGACCATTTCTTCAGTCCCTGA  50

seq1  TTTTAGATAACCATAAATAAGATGCTAAAATGCAGATTAATATTTATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATAACCATAAATAAGATGCTAAAATGCAGATTAATATTTATAGC  100

seq1  TTATGTCTTTGTTCAACACTCATTAAAGAACTAAATTGAATGAGATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTTTGTTCAACACTCATTAAAGAACTAAATTGAATGAGATTTAG  150

seq1  AGTGGGAGAATAAATTTAAAGTATTGGTGAAATAGTTTTTTTATTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGAATAAATTTAAAGTATTGGTGAAATAGTTTTTTTATTCCATT  200

seq1  AAGCCTAGAATGCATAGATTTCCACTAAAGCAGAACATATGGGACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGAATGCATAGATTTCCACTAAAGCAGAACATATGGGACAGGAA  250

seq1  TACATAATAATTTTTAATGTCAAGTTGTCATTTCATGTGCATTAAATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATAATTTTTAATGTCAAGTTGTCATTTCATGTGCATTAAATAAC  300

seq1  AGGTCAGGCTGAAATTTGTAAAACTTCATTCTTTTTCAAAGAAACAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGCTGAAATTTGTAAAACTTCATTCTTTTTCAAAGAAACAATTA  350

seq1  ATGATGATTAATAACTTTTCTGTATGCTTTCCAATATTCTAGAATTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATTAATAACTTTTCTGTATGCTTTCCAATATTCTAGAATTAATA  400

seq1  TCTATCAACTTGGAGTCTGAAGAAGTTGTTTACTAGGAAGTATATGAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAACTTGGAGTCTGAAGAAGTTGTTTACTAGGAAGTATATGAGCG  450

seq1  GACAGAAGAGATTCCTTGGCTCTTAAGAGCATTATCTATCTTCGTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGAGATTCCTTGGCTCTTAAGAGCATTATCTATCTTCGTGGTCT  500

seq1  AAGCTTCCATACCAGAAACTTCTTCCTGGCTCACAAAATTCTATTATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCATACCAGAAACTTCTTCCTGGCTCACAAAATTCTATTATACA  550

seq1  GGGACCTGATGCCCTCTTCTGGCTTCCATAAGTAGTACATGCATGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGATGCCCTCTTCTGGCTTCCATAAGTAGTACATGCATGTGGTT  600

seq1  AACAGACACGGGCAGGCAAAATACCTATTCACATAAAAATACATCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACACGGGCAGGCAAAATACCTATTCACATAAAAATACATCATCCT  650

seq1  AACCCCCCCTAAAAAAAAGTCGACCTCAAATTTGTCTTGCCTAAAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCCTAAAAAAAAGTCGACCTCAAATTTGTCTTGCCTAAAATAAG  700

seq1  TGCAGGAACAGAGATAGAGCAGAGACTGAGGAAATATCCAACCTATGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAACAGAGATAGAGCAGAGACTGAGGAAATATCCAACCTATGTCT  750

seq1  GGCCTAGGTTGAGACTCATCCCATGGGCAAGCACCAATCCCTGACACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGTTGAGACTCATCCCATGGGCAAGCACCAATCCCTGACACTAT  800

seq1  TCATGATACTCTGCTATGC-TTGCAGATAGAAGCCTAGTAGAGCTGTCCT  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCATGATACTCTGCTATGCTTTGCAGATAGAAGCCTAGTAGAGCTGTCCT  850

seq1  CTAAGACGCTTCATCCAGCTTGGTGCTCAGGGTGTTTTGTGGAAAAGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACGCTTCATCCAGCTTGGTGCTCAGGGTGTTTTGTGGAAAAGTTG  900

seq1  TGGGGAGTATTGAGAGACTCAGAGAGGATAGGGCCTGTATAAGAAG  945
      |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGGGAGTATTGAGAGACTCAGAGAGGATAGGGCCTGTAT-AGAAG  945