BAC Information

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BAC

Clone NameB6Ng01-069G09
Chromosome13 (Build37)1 (Build37)
Map Location 62,734,031 - 62,735,19461,721,138 - 61,721,252
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503
Downstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069G09.bB6Ng01-069G09.g
ACCDH887721DH887722
length1,141991
definitionDH887721|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G09, 5' end.DH887722|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,734,031 - 62,735,194)(61,721,138 - 61,721,252)
sequence
gaattccagttttttgaggtataatttttaaatttattttatatgtattt
taattttattttgcatgcatgtgtttgagaacagaaggcaacagcaaata
cttcccaataatagttaataaccaggtagtttggggaatggaacctctgt
ctactgtaacaatatccagtttatgttaactgctaggctgtctgtctgac
aatgtgcttatttaaattgtacttttgtacatgttaagtaaaaatattgc
attattttcttcttcattttctattctttatccattcccaaaagtgttca
aatatcttctttgttaaggatgaaaaattcacaaatacatgaagaaaacc
tgctgtgtgcattcctttgactgtatttgttttttcaggtatgaataatt
tgcattgtatatgccatgaggaagctcatcccagcatgaggatttttttc
acttgtgggagaatctgctcctgaagtgacctaggatatcttgtgcaaaa
aaacatgaagaataaaacttacagtggtaaacatctcagataacacttaa
tgatgtcatgaccccgaacttctggagctgcagggaagactatggctact
gtcctgagacaatcacagaatgccttggctctctggaccttgcaacacac
cctgttgaccacttttaacttggatgactgtcaaatcctggtgtcgtcac
tctgtaagtaccatatatataggcatgtgcaaccatgcctggtttaggtg
gcttccacttcaattactaatgcattagagttacagcatgtgaaagatga
acagttccaattaagtatattcagaagcaaattaactgtgtgaccctcag
ttttaccatctgtagaataaaaatagaagtctacctttgagccaggtggt
gatggtgtgacccgtcagcagatccagtattcgagggtcttgaggggacc
ttctcctagacccaatggggggagagagagacaagggtttttgccaatac
cgccaaggaaaggtctgaattgcatcagacccctagcttaatcaggtcca
aggtttaatgcctaagcaaaggggaatacaatcttatctccgggaggggt
ggggcattaagcgacgagaagacttcatgggaggggggggg
gaattcctgatctttccaaaacttttatcatgagtgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatatctttatgtgtcttaattggcatttctttagaaag
tctatatcctattcaaaggcctaagaaatgataggggtgaacctcattaa
gtatcctaaaatgacttggtagttacagtagaactttttgtgtcaggaaa
taagtgtgccaggacccagaattctatgaatacattgtctatgaagaata
gatgcccaatgttgtctctactgtgctttctttttttcacatgtatggga
tgctctagaaggcagtgacttatgaggacgtgcatgtgaacttcactaag
gaagaatggtctttgctggatcctttccagaagaaactctacaaagatgt
catgctagagtcctacaggaacttcaatgctataggtaagaatgaatttc
cattcccttttaaaaattagagaaaattgtttctttcttattgatgctct
ttcgtaatttcagttgagatggaagaagaattaggtgaataaatcatgca
tgactctaaggttcactgaagttagtaacttacagtttgcataattatca
ataatgtatcatacattttctattactctattttaggcttcagttggaaa
gatcaaaatattgaagaacattatcaaatttctagaagacatggaaggta
atttatacatgaaagctcctacaaatatgcttctgaaggagttttaatat
gtcctggaagtttaaggaaaagcaactgtgtaaataagcacagctttagt
gtatcgagattgttacagtctaacaaaccatgtttcggatgtgcagtacc
tgattaattttcaggcatcattaagaaagagacatggaacatgcttagct
caagcatttgaacatagccctatttgactaccctttaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62734031_62735194
seq2: B6Ng01-069G09.b_44_1184

seq1  GAATTCCAGTTTTTTGAGGTATAATTTTTAAATTTATTTTATATGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTTTTGAGGTATAATTTTTAAATTTATTTTATATGTATTT  50

seq1  TAATTTTATTTTGCATGCATGTGTTTGAGAACAGAAGGCAACAGCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTTTGCATGCATGTGTTTGAGAACAGAAGGCAACAGCAAATA  100

seq1  CTTCCCAATAATAGTTAATAACCAGGTAGTTTGGGGAATGGAACCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATAATAGTTAATAACCAGGTAGTTTGGGGAATGGAACCTCTGT  150

seq1  CTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGTCTGTCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGTCTGTCTGAC  200

seq1  AATGTGCTTATTTAAATTGTACTTTTGTACATGTTAAGTAAAAATATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTATTTAAATTGTACTTTTGTACATGTTAAGTAAAAATATTGC  250

seq1  ATTATTTTCTTCTTCATTTTCTATTCTTTATCCATTCCCAAAAGTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTTCTTCATTTTCTATTCTTTATCCATTCCCAAAAGTGTTCA  300

seq1  AATATCTTCTTTGTTAAGGATGAAAAATTCACAAATACATGAAGAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCTTTGTTAAGGATGAAAAATTCACAAATACATGAAGAAAACC  350

seq1  TGCTGTGTGCATTCCTTTGACTGTATTTGTTTTTTCAGGTATGAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGCATTCCTTTGACTGTATTTGTTTTTTCAGGTATGAATAATT  400

seq1  TGCATTGTATATGCCATGAGGAAGCTCATCCCAGCATGAGGATTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTATATGCCATGAGGAAGCTCATCCCAGCATGAGGATTTTTTTC  450

seq1  ACTTGTGGGAGAATCTGCTCCTGAAGTGACCTAGGATATCTTGTGCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGGAGAATCTGCTCCTGAAGTGACCTAGGATATCTTGTGCAAAA  500

seq1  AAACATGAAGAATAAAACTTACAGTGGTAAACATCTCAGATAACACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAGAATAAAACTTACAGTGGTAAACATCTCAGATAACACTTAA  550

seq1  TGATGTCATGACCCCGAACTTCTGGAGCTGCAGGGAAGACTATGGCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATGACCCCGAACTTCTGGAGCTGCAGGGAAGACTATGGCTACT  600

seq1  GTCCTGAGACAATCACAGAATGCCTTGGCTCTCTGGACCTTGCAACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGACAATCACAGAATGCCTTGGCTCTCTGGACCTTGCAACACAC  650

seq1  CCTGTTGACCACTTTTAACTTGGATGACTGTCAAATCCTGGTGTCGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGACCACTTTTAACTTGGATGACTGTCAAATCCTGGTGTCGTCAC  700

seq1  TCTGTAAGTACCATATATATAGGCATGTGCAACCATGCCTGGTTTAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTACCATATATATAGGCATGTGCAACCATGCCTGGTTTAGGTG  750

seq1  GCTTCCACTTCAATTACTAATGCATTAGAGTTACAGCATGTGAAAGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACTTCAATTACTAATGCATTAGAGTTACAGCATGTGAAAGATGA  800

seq1  ACAGTTCCAATTAAGTATATTCAGAAGCAAATTAACTGTGTGACCCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCAATTAAGTATATTCAGAAGCAAATTAACTGTGTGACCCTCAG  850

seq1  TTTTACCATCTGTAGAATAAAAATAGAAGTCTACCCTTGAGCCAGGTGGT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTACCATCTGTAGAATAAAAATAGAAGTCTACCTTTGAGCCAGGTGGT  900

seq1  GATGGTGTGACCCGTCCAGCAGATCCAGTTATTCGAGGGTCTTGAGGGGA  950
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GATGGTGTGACCCGT-CAGCAGATCCAG-TATTCGAGGGTCTTGAGGGGA  948

seq1  CCTTCTCCTAAGAACCAAATGGGGGGTAGAGAGAGACGAGGGTTTTGTGC  1000
      ||||||||||   ||| ||||||||| |||||||||| |||||||| |||
seq2  CCTTCTCCTA--GACCCAATGGGGGG-AGAGAGAGACAAGGGTTTT-TGC  994

seq1  AAATAACGACAAGGAAAGGTTCTGAATTGCATCAAGACCCCAATGCATTA  1050
       |||| || |||||||||| ||||||||||||| ||||||| | || |||
seq2  CAATACCGCCAAGGAAAGG-TCTGAATTGCATC-AGACCCCTA-GC-TTA  1040

seq1  GTCAGGTCCAAGGTTTAAATGCATAAGCAAAAGGGGAAGTACAGATACTT  1100
       ||||||||||||||| ||||| ||||| ||||||||| |||| || |||
seq2  ATCAGGTCCAAGGTTT-AATGCCTAAGC-AAAGGGGAA-TACA-AT-CTT  1085

seq1  ATCAGCGGGAGGGGTGGGGCAATACAAGCAAAACGAGAAGTACTTATCAG  1150
      |||  |||||||||||||||| |  ||||   |||||||| |||  ||| 
seq2  ATCTCCGGGAGGGGTGGGGCATT--AAGC--GACGAGAAG-ACT--TCA-  1127

seq1  TGGGAGGGGTGGGG  1164
      ||||||||| ||||
seq2  TGGGAGGGGGGGGG  1141

seq1: chr1_61721138_61721252
seq2: B6Ng01-069G09.g_70_184 (reverse)

seq1  TATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGC  50

seq1  AGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGG  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAAAAAGCATTTGACAAGATCCAACACCCACTCATGATAAAAGTTTTGG  100

seq1  AAAGATCAGGAATTC  115
      |||||||||||||||
seq2  AAAGATCAGGAATTC  115