BAC Information

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BAC

Clone NameB6Ng01-069K02
Chromosome13 (Build37)
Map Location 23,361,545 - 23,483,539
singlet/doubletdoublet
Overlap geneZfp322a
Upstream geneV1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
Downstream geneAbt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069K02.bB6Ng01-069K02.g
ACCDH887881DH887882
length1,104932
definitionDH887881|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K02, 5' end.DH887882|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,361,545 - 23,362,659)(23,482,610 - 23,483,539)
sequence
gaattctcaaatgctagagagggacaactacagcatgctttgtcctagag
ttcttttgttgttgttgcccccccccacacacacacacacacacacacag
ggtttctctgtgtagccctggaactcactttgtagaccaggctggcctcg
aactcagatatccgcatggctctgcctccgagtgctggaattaaaggcgt
gtgccaccacgcccggctgtcctagagttctaatgtatcacaacatttaa
aagcatatgaatagatttacaaaagaggaaaagcagcccgttacagacaa
tctaaaactagttcgagattcccaggaagctgaacacagattctctctcc
atctttccattccaccaccgctgtcatgtgacttttcgtttgcgctgggg
gaaaaaaacaataaacaataaacaaaaatcaaaacaaaacaaagcaaaag
agaagctgaacctgctatcgtaatcctactgtattttcccccaaaccaaa
gcatgggagcaagacagggaaggcggtggtccgttgaaatcattagtctt
tctggattctaaaaatagccgaagctgccaccataatcctactatatttt
tccctaagccagcgcatgataggaagacagggaaggcagctgtctaacgc
aatcagtagtcatgtgattctaagaataattaaatgctgattctaaaatt
aattcgtaactgctgattgggctcctgacggctctatgaaaacaatgctc
caggtgaggctcgaactcacaacctcggcatcgctctcgcgcacacactg
ttgtataagtaccgcgcgctaaccgattgcgccactggagcatccgtagg
acactcctggtcactcgtttacacggcctacgtagaacatccaccgttcg
ctatactgtggtgtgggtgcatacccagctttgcatccagttgcaagtcc
tttgatacccgcaccaagcggctattacagccctggcgacccggtatgga
gcagcatctgcgcgtcccaagctttcccctccccctccactggcgtgaaa
gatgctccctgggagatgcgcagccctggcaacgatgctcaagatgcgtt
tttt
gaattcccttcccagatgtttttctgttctaatctttacggagctcagag
ccatggaggacactgaggcaggccttgagctgagccttcctctctaggta
cttagaacatactgaaggaccagaagttaagtttgtggatttctagaccc
ttgagctagctgaaatgggatttatgactgaatgaactgtagtctcaggc
tctaagaacattggcttgggggtcaggtggatcaatttgaggggagaact
gcaaagcttctgttgtcctaaggaggatataacagccagaagacgtgtag
gagtggtctaagagaggtccaacttggagaagtagagtcttcgaaaaagc
attgcacatcttacattgcacattgcatgccttgtgttgcatgtctcatt
atttcaactgtagcctcagaattcttcaaatttccaagaataaacaaaat
gacacacatgcttctacaatgacatcaggataatctgatatatatatgtc
cactggtggccaaaaatgataaaggataaaaacacctgtactttgagggg
caggagcaccaggggaggagagggaaggggcgtggcagcaaccaggtgtg
gctgctgacttagtacccatcctgcccttagtccccctcaggataaaagt
gtttctcttaagaatagctccaacaagcaggcaaaacaggtgctctgtta
aatctctaccctttaattagaattccagtcttccagatgtctgcattgag
gcctatgttagatttttttttttatagtgcagttgtctgacctgaaattg
gacacttttcaggctgcattataatatatattacttgaccttcttggaat
ttcttgggaaacagagtttctttaacttttttttcatttcattttactga
aaaatggatcttaatttttcaatcaatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23361545_23362659
seq2: B6Ng01-069K02.b_43_1146

seq1  GAATTCTCAAATGCTAGAGAGGGACAACTACAGCATGCTTTGTCCTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATGCTAGAGAGGGACAACTACAGCATGCTTTGTCCTAGAG  50

seq1  TTCTTTTGTTGTTGTTGCCCCCCCCCACACACACACACACACACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTTGTTGTTGCCCCCCCCCACACACACACACACACACACACAG  100

seq1  GGTTTCTCTGTGTAGCCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  150

seq1  AACTCAGATATCCGCATGGCTCTGCCTCCGAGTGCTGGAATTAAAGGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGATATCCGCATGGCTCTGCCTCCGAGTGCTGGAATTAAAGGCGT  200

seq1  GTGCCACCACGCCCGGCTGTCCTAGAGTTCTAATGTATCACAACATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACGCCCGGCTGTCCTAGAGTTCTAATGTATCACAACATTTAA  250

seq1  AAGCATATGAATAGATTTACAAAAGAGGAAAAGCAGCCCGTTACAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATGAATAGATTTACAAAAGAGGAAAAGCAGCCCGTTACAGACAA  300

seq1  TCTAAAACTAGTTCGAGATTCCCAGGAAGCTGAACACAGATTCTCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACTAGTTCGAGATTCCCAGGAAGCTGAACACAGATTCTCTCTCC  350

seq1  ATCTTTCCATTCCACCACCGCTGTCATGTGACTTTTCGTTTGCGCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCATTCCACCACCGCTGTCATGTGACTTTTCGTTTGCGCTGGGG  400

seq1  GAAAAAAACAATAAACAATAAACAAAAATCAAAACAAAACAAAGCAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAACAATAAACAATAAACAAAAATCAAAACAAAACAAAGCAAAAG  450

seq1  AGAAGCTGAACCTGCTATCGTAATCCTACTGTATTTTCCCCCAAACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAACCTGCTATCGTAATCCTACTGTATTTTCCCCCAAACCAAA  500

seq1  GCATGGGAGCAAGACAGGGAAGGCGGTGGTCCGTTGAAATCATTAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGCAAGACAGGGAAGGCGGTGGTCCGTTGAAATCATTAGTCTT  550

seq1  TCTGGATTCTAAAAATAGCCGAAGCTGCCACCATAATCCTACTATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTCTAAAAATAGCCGAAGCTGCCACCATAATCCTACTATATTTT  600

seq1  TCCCTAAGCCAGCGCATGATAGGAAGACAGGGAAGGCAGCTGTCTAACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGCCAGCGCATGATAGGAAGACAGGGAAGGCAGCTGTCTAACGC  650

seq1  AATCAGTAGTCATGTGATTCTAAGAATAATTAAATGCTGATTCTAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTAGTCATGTGATTCTAAGAATAATTAAATGCTGATTCTAAAATT  700

seq1  AATTCGTAACTGCTGATTGGGCTCCTGACGGCTCTATGAAAACAATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTAACTGCTGATTGGGCTCCTGACGGCTCTATGAAAACAATGCTC  750

seq1  CAGGTGAGGCTCGAACTCACAACCTCGGCATCGCTCTCGCGCACACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGGCTCGAACTCACAACCTCGGCATCGCTCTCGCGCACACACTG  800

seq1  TTGTATAAGTACCGCGCGCTAACCGATTGCGCCACTGGAGCATCCGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAGTACCGCGCGCTAACCGATTGCGCCACTGGAGCATCCGTAGG  850

seq1  ACACTCCTGGTCACTCG-TTACACGGCCTACGTAGAACATCCACCGTTCG  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACTCCTGGTCACTCGTTTACACGGCCTACGTAGAACATCCACCGTTCG  900

seq1  CTATACTGTGGTGTGGGTGCATACCCAGCTATGCATCCAGTTGCAAGTCC  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTATACTGTGGTGTGGGTGCATACCCAGCTTTGCATCCAGTTGCAAGTCC  950

seq1  TTTGATACCCGCACCAAGCGGCTATTACAGCCCTGGCGACCCGGTATGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTTGATACCCGCACCAAGCGGCTATTACAGCCCTGGCGACCCGGTATGGA  1000

seq1  GCAGCAATCTGCGCGGTCCCAAAGCCTTTCCCCT-CCCCTCCACCTTGGC  1048
      ||||| |||||||| |||||||   ||||||||| |||||||||  ||||
seq2  GCAGC-ATCTGCGC-GTCCCAA--GCTTTCCCCTCCCCCTCCAC--TGGC  1044

seq1  GTGAAAGGATGCTCCCTGGGAAGATGCGCAGCCCTGGCAAACCGGATTGC  1098
      |||||| ||||||||||||| |||||||||||||||||||  ||   |||
seq2  GTGAAA-GATGCTCCCTGGG-AGATGCGCAGCCCTGGCAA--CG--ATGC  1088

seq1  TCAAAGATGCGGTTTTT  1115
      || |||||||| |||||
seq2  TC-AAGATGCGTTTTTT  1104

seq1: chr13_23482610_23483539
seq2: B6Ng01-069K02.g_68_999 (reverse)

seq1  AATAAA-----TGTAAAATTAAGATACAATATTTCAAATAAAATGAAATG  45
      ||||||     || ||||||||||| | || |||| | ||||||||||||
seq2  AATAAATTGATTGAAAAATTAAGAT-CCATTTTTC-AGTAAAATGAAATG  48

seq1  AAAAAAAGTAAAAAGAAAACTCTGTTTCCCAAGAAATTCCAAGAAGGTCA  95
      |||||||    |||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTTAAAG-AAACTCTGTTTCCCAAGAAATTCCAAGAAGGTCA  97

seq1  AGTAATATATATTATAATGCAGCCTGAAAAGTGTCCAATTTCAGGTCAGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATATATTATAATGCAGCCTGAAAAGTGTCCAATTTCAGGTCAGA  147

seq1  CAACTGCACTATAAAAAAAAAAATCTAACATAGGCCTCAATGCAGACATC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCACTATAAAAAAAAAAATCTAACATAGGCCTCAATGCAGACATC  197

seq1  TGGAAGACTGGAATTCTAATTAAAGGGTAGAGATTTAACAGAGCACCTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACTGGAATTCTAATTAAAGGGTAGAGATTTAACAGAGCACCTGT  247

seq1  TTTGCCTGCTTGTTGGAGCTATTCTTAAGAGAAACACTTTTATCCTGAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGCTTGTTGGAGCTATTCTTAAGAGAAACACTTTTATCCTGAGG  297

seq1  GGGACTAAGGGCAGGATGGGTACTAAGTCAGCAGCCACACCTGGTTGCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAAGGGCAGGATGGGTACTAAGTCAGCAGCCACACCTGGTTGCTG  347

seq1  CCACGCCCCTTCCCTCTCCTCCCCTGGTGCTCCTGCCCCTCAAAGTACAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCTTCCCTCTCCTCCCCTGGTGCTCCTGCCCCTCAAAGTACAG  397

seq1  GTGTTTTTATCCTTTATCATTTTTGGCCACCAGTGGACATATATATATCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTATCCTTTATCATTTTTGGCCACCAGTGGACATATATATATCA  447

seq1  GATTATCCTGATGTCATTGTAGAAGCATGTGTGTCATTTTGTTTATTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCCTGATGTCATTGTAGAAGCATGTGTGTCATTTTGTTTATTCTT  497

seq1  GGAAATTTGAAGAATTCTGAGGCTACAGTTGAAATAATGAGACATGCAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGAAGAATTCTGAGGCTACAGTTGAAATAATGAGACATGCAAC  547

seq1  ACAAGGCATGCAATGTGCAATGTAAGATGTGCAATGCTTTTTCGAAGACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCATGCAATGTGCAATGTAAGATGTGCAATGCTTTTTCGAAGACT  597

seq1  CTACTTCTCCAAGTTGGACCTCTCTTAGACCACTCCTACACGTCTTCTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTCCAAGTTGGACCTCTCTTAGACCACTCCTACACGTCTTCTGG  647

seq1  CTGTTATATCCTCCTTAGGACAACAGAAGCTTTGCAGTTCTCCCCTCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATATCCTCCTTAGGACAACAGAAGCTTTGCAGTTCTCCCCTCAAA  697

seq1  TTGATCCACCTGACCCCCAAGCCAATGTTCTTAGAGCCTGAGACTACAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCACCTGACCCCCAAGCCAATGTTCTTAGAGCCTGAGACTACAGT  747

seq1  TCATTCAGTCATAAATCCCATTTCAGCTAGCTCAAGGGTCTAGAAATCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGTCATAAATCCCATTTCAGCTAGCTCAAGGGTCTAGAAATCCA  797

seq1  CAAACTTAACTTCTGGTCCTTCAGTATGTTCTAAGTACCTAGAGAGGAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAACTTCTGGTCCTTCAGTATGTTCTAAGTACCTAGAGAGGAAG  847

seq1  GCTCAGCTCAAGGCCTGCCTCAGTGTCCTCCATGGCTCTGAGCTCCGTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTCAAGGCCTGCCTCAGTGTCCTCCATGGCTCTGAGCTCCGTAA  897

seq1  AGATTAGAACAGAAAAACATCTGGGAAGGGAATTC  930
      |||||||||||||||||||||||||||||||||||
seq2  AGATTAGAACAGAAAAACATCTGGGAAGGGAATTC  932