BAC Information

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BAC

Clone NameB6Ng01-069N21
Chromosome13 (Build37)
Map Location 29,315,952 - 29,316,991
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069N21.bB6Ng01-069N21.g
ACCDH888039DH888040
length1,1601,039
definitionDH888039|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N21, 5' end.DH888040|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagttttgatta
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttttt
cttgaaggcactcatagctatgagtttcccttcttagaaatgctttcatt
gggttcccaaaggtttggtaccttgtggcttcattttcatttaaactcta
aaaagattttaatttcttcttaatccttctctgaccaagggatcatagga
aaaatgtgttccatttcccgtgaatgtggcctttcgttatttatttctgt
tgaaagatac
gaattctagagcagccagggctacacagagaaaccttgatgagctgtagc
accaactgcacacagccggaatctcagtgtgtttattacatacagcacag
aagggaggaagttagctagtcttggaggaggtctctggggaccaatcgta
ggctgcagtcatcagggaggaatacgctgcagctgctagttggtgcacac
ttgcctcaattgtttataaatgcctgtactgggaccggaggaagcctttg
ccactcctccaagccttacccagaggacgcctttgccaagtctcatgggt
ctgagacagtggtgttcctgacatggctgttcccgtatcaacaatatgca
tttacttggaactttctcccctccctataccttccttcattccaggcttt
ctctactccttgttccctgcgagaagtttcctaaagcagattccgaagct
gatcctctgccgtgcttctctacaacctctgctgatggacaagtgctccc
agcctgtttccacttctgtctagctcctctgattctctccttagacctca
agggagggagtatggtggcttctgcatcaccacattccagggtcaccaag
aatgctgaaatgcaaaaggagctatggaggaagttttagtggccacaacc
agccctccacggccatgtggcaatgacgaattgggatggttagagaactt
tccacttgcatcttttccttgtgccctgtggctcagccttccaagttcta
gtgatgccagctggaggatacgtttccaacagtggcatctgaggggtggg
aatgacttaagacaggctgtgataatggtcacatctcagacgtggatgct
ttaaaagcttggctggtctatatcgatgtagaaggtttttgaacaaattt
aattcaaccttattgggattttcaacaaactactttcatttgtattcaca
agcatgttagtggcaatatgtacatggtagagttgcttacatgagttcgt
ttcaagtatcaccttcactgttggtcacggtgggtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29315952_29316991
seq2: B6Ng01-069N21.g_69_1107 (reverse)

seq1  AACCA---ACCGTGAACAACAGTGAAGGTAGATTACTTGAAACGAACTCA  47
      |||||   ||||||| ||||||||||||| || |||||||||||||||||
seq2  AACCACCCACCGTGACCAACAGTGAAGGT-GA-TACTTGAAACGAACTCA  48

seq1  TGTAAGCACTTCTTACATTGTACATTATTG-CACTAACATGCTTGTGAAT  96
      ||||||||  || |||  |||||| ||||| |||||||||||||||||||
seq2  TGTAAGCAACTC-TACCATGTACA-TATTGCCACTAACATGCTTGTGAAT  96

seq1  ACAAATGAAAGTAGTTTGTTTGAAAATCCCAATAAGGTTGAGTTAAATTT  146
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  ACAAATGAAAGTAGTTTG-TTGAAAATCCCAATAAGGTTGAATTAAATTT  145

seq1  GTTCAAAAACCTTCTACATCGATATAGACCAGCCAAGCTTTTAAAGCATC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAAACCTTCTACATCGATATAGACCAGCCAAGCTTTTAAAGCATC  195

seq1  CACGTCTGAGATGTGACCATTATCACAGCCTGTCTTAAGTCATTCCCACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTGAGATGTGACCATTATCACAGCCTGTCTTAAGTCATTCCCACC  245

seq1  CCTCAGATGCCACTGTTGGAAACGTATCCTCCAGCTGGCATCACTAGAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATGCCACTGTTGGAAACGTATCCTCCAGCTGGCATCACTAGAAC  295

seq1  TTGGAAGGCTGAGCCACAGGGCACAAGGAAAAGATGCAAGTGGAAAGTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGCTGAGCCACAGGGCACAAGGAAAAGATGCAAGTGGAAAGTTC  345

seq1  TCTAACCATCCCAATTCGTCATTGCCACATGGCCGTGGAGGGCTGGTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCATCCCAATTCGTCATTGCCACATGGCCGTGGAGGGCTGGTTGT  395

seq1  GGCCACTAAAACTTCCTCCATAGCTCCTTTTGCATTTCAGCATTCTTGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTAAAACTTCCTCCATAGCTCCTTTTGCATTTCAGCATTCTTGGT  445

seq1  GACCCTGGAATGTGGTGATGCAGAAGCCACCATACTCCCTCCCTTGAGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGAATGTGGTGATGCAGAAGCCACCATACTCCCTCCCTTGAGGT  495

seq1  CTAAGGAGAGAATCAGAGGAGCTAGACAGAAGTGGAAACAGGCTGGGAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGAGAATCAGAGGAGCTAGACAGAAGTGGAAACAGGCTGGGAGC  545

seq1  ACTTGTCCATCAGCAGAGGTTGTAGAGAAGCACGGCAGAGGATCAGCTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCCATCAGCAGAGGTTGTAGAGAAGCACGGCAGAGGATCAGCTTC  595

seq1  GGAATCTGCTTTAGGAAACTTCTCGCAGGGAACAAGGAGTAGAGAAAGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGCTTTAGGAAACTTCTCGCAGGGAACAAGGAGTAGAGAAAGCC  645

seq1  TGGAATGAAGGAAGGTATAGGGAGGGGAGAAAGTTCCAAGTAAATGCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAAGGAAGGTATAGGGAGGGGAGAAAGTTCCAAGTAAATGCATA  695

seq1  TTGTTGATACGGGAACAGCCATGTCAGGAACACCACTGTCTCAGACCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATACGGGAACAGCCATGTCAGGAACACCACTGTCTCAGACCCAT  745

seq1  GAGACTTGGCAAAGGCGTCCTCTGGGTAAGGCTTGGAGGAGTGGCAAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGGCAAAGGCGTCCTCTGGGTAAGGCTTGGAGGAGTGGCAAAGG  795

seq1  CTTCCTCCGGTCCCAGTACAGGCATTTATAAACAATTGAGGCAAGTGTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCGGTCCCAGTACAGGCATTTATAAACAATTGAGGCAAGTGTGC  845

seq1  ACCAACTAGCAGCTGCAGCGTATTCCTCCCTGATGACTGCAGCCTACGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTAGCAGCTGCAGCGTATTCCTCCCTGATGACTGCAGCCTACGAT  895

seq1  TGGTCCCCAGAGACCTCCTCCAAGACTAGCTAACTTCCTCCCTTCTGTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCAGAGACCTCCTCCAAGACTAGCTAACTTCCTCCCTTCTGTGC  945

seq1  TGTATGTAATAAACACACTGAGATTCCGGCTGTGTGCAGTTGGTGCTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAATAAACACACTGAGATTCCGGCTGTGTGCAGTTGGTGCTACA  995

seq1  GCTCATCAAGGTTTCTCTGTGTAGCCCTGGCTGCTCTAGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCAAGGTTTCTCTGTGTAGCCCTGGCTGCTCTAGAATTC  1039