BAC Information

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BAC

Clone NameB6Ng01-070H21
Chromosome13 (Build37)
Map Location 49,474,227 - 49,603,021
singlet/doubletdoublet
Overlap geneBicd2, Ippk, Cenpp, Tes3-ps, Ecm2
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3
Downstream geneAspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H21.bB6Ng01-070H21.g
ACCDH888483DH888484
length1,1591,095
definitionDH888483|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H21, 5' end.DH888484|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,474,227 - 49,475,388)(49,601,920 - 49,603,021)
sequence
gaattctgtccagtctgctgtcaacaagtggcatgggcagggaatttaca
tagcccttggcccatctggctcagcatgagatgttgtttggtcatcctag
agtcttctaagccttgttgacctgttttcctgctataactacctttgcag
atggagcgggagaaggtgggcctgctggcaacactgcaggacacacagaa
gcagctggagcaggctcggggaaccctctctgagcagcatgagaaggtga
atcgtctcacagagaaccttagtgccctccggcgcctgcaggctggcaag
gagcgacagacctcgttggataatgagaaggaccgtgacagccacgaaga
cggtgactactatgaggtggacatcaatgggcctgagatcctggcctgca
agtaccacgtggctgtggctgaggctggcgagctccgggagcagctcaag
gcgttgcgcagcacacacgaagctcgcgaagcccagcacgcagaagaaaa
gggccggtatgaggctgagggccaggcactcactgagaagatctctctgc
tggagaaggctagccaccaggaccgagagctgctggcccatctggaaaag
gagctgaagaaggtgagcgatgtggctggtgagacccagggcagcctgaa
tgtggctcaggatgagctggtgaccttcagcgaggagctggccaacctct
accaccatgtgtgcatgtgcaacaacgagacgcccaaccgtgtcatgctc
gactattatcgtgagggccagggcaaggctggccgcaccagcccagaggg
ccgcgggcgccggtcacctgtcctcttgcccaaggggctgttggccacag
aggtgggccgagcagatggtgggactggggacaacagtccttcacccagt
tcttcactgccgtcacctctgagtgacccccgccgggaacctatgaacat
ctacaacctgatcgccatcatccgagaccagatcaagcacctgcaggcag
ccgtggaccgtacgaccgagctgttccggcagcggattgcctcgcaggag
ctggtcctgctgtgacagacaaggaagccctcatggaggaatcttcaagc
ttgaagttccctgctgagtaacaagcgggagcagatcacacacctgccca
ccgtgctca
gaattcatgccagaaattgaataaaatctcatcaaatgtttgaacctaag
atgatgtattttctgtctaaaaattttcatgctttgagtgtagtgttaca
gacactgtcaataatgcatctagtgatttgaagctggacatcactgtatc
aatatcatcacaccatgggtctagttttgctaatgtcacaagcaccagtg
tcatcaccccgactgcttggccctcatctttgtttgtgtttctcctcagc
cttgtgaagctattttaaaactctgttaactttttctggaatccacagat
gtttctagaagcagagctatttcagacctgagacattcttattccaaaca
ctggccctgctgtttttctcatcttcctgttcgttctcagcagatgagta
gatctgttttccttaccagaggaagtgccttccgattccttttgttcttt
gaagaaatatgtatttcttactgttaaatgtggtaaaaatttgtgaatct
taaatatctgaaaatattgtgttttgttaaaaccatagttatagcttcaa
aatcatcttccctgattacttttcagatcctgattgactgttttcctttt
gcacactgtttccttgtgcttttgctttgatacagggtcttgctatatag
ccatggctagcctagagctacaatgtagactaggctaaccttgaacttgt
cgtgatccttctgtcatttcctccaagtgttaggagtgcaggtgttagtt
actacacccaacttggtccattcttgttgtgttatggagaagtcaacttg
aattcaattctcatccctttgtaggaaggctttttattctgccttcttgt
gaaaatgttctatattttagtatgtctttaacattcataagttttgctat
gaactagtactaaattgttggttttttccttcttgaaattctttaaaccc
taaaatgtatttctctgatgaactttttgttaattccttcccatactatt
caagatcttttcacttcatcccagccctcctctcatgtctgatgtatctg
ttcttctcttaagtgagtcccagtctctgacttacaggagctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49474227_49475388
seq2: B6Ng01-070H21.b_41_1199

seq1  GAATTCTGTCCAGTCTGCTGTCAACAAGTGGCATGGGCAGGGAATTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCAGTCTGCTGTCAACAAGTGGCATGGGCAGGGAATTTACA  50

seq1  TAGCCCTTGGCCCATCTGGCTCAGCATGAGATGTTGTTTGGTCATCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTGGCCCATCTGGCTCAGCATGAGATGTTGTTTGGTCATCCTAG  100

seq1  AGTCTTCTAAGCCTTGTTGACCTGTTTTCCTGCTATAACTACCTTTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTAAGCCTTGTTGACCTGTTTTCCTGCTATAACTACCTTTGCAG  150

seq1  ATGGAGCGGGAGAAGGTGGGCCTGCTGGCAACACTGCAGGACACACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCGGGAGAAGGTGGGCCTGCTGGCAACACTGCAGGACACACAGAA  200

seq1  GCAGCTGGAGCAGGCTCGGGGAACCCTCTCTGAGCAGCATGAGAAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGAGCAGGCTCGGGGAACCCTCTCTGAGCAGCATGAGAAGGTGA  250

seq1  ATCGTCTCACAGAGAACCTTAGTGCCCTCCGGCGCCTGCAGGCTGGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCTCACAGAGAACCTTAGTGCCCTCCGGCGCCTGCAGGCTGGCAAG  300

seq1  GAGCGACAGACCTCGTTGGATAATGAGAAGGACCGTGACAGCCACGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGACAGACCTCGTTGGATAATGAGAAGGACCGTGACAGCCACGAAGA  350

seq1  CGGTGACTACTATGAGGTGGACATCAATGGGCCTGAGATCCTGGCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACTACTATGAGGTGGACATCAATGGGCCTGAGATCCTGGCCTGCA  400

seq1  AGTACCACGTGGCTGTGGCTGAGGCTGGCGAGCTCCGGGAGCAGCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACGTGGCTGTGGCTGAGGCTGGCGAGCTCCGGGAGCAGCTCAAG  450

seq1  GCGTTGCGCAGCACACACGAAGCTCGCGAAGCCCAGCACGCAGAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGCGCAGCACACACGAAGCTCGCGAAGCCCAGCACGCAGAAGAAAA  500

seq1  GGGCCGGTATGAGGCTGAGGGCCAGGCACTCACTGAGAAGATCTCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGTATGAGGCTGAGGGCCAGGCACTCACTGAGAAGATCTCTCTGC  550

seq1  TGGAGAAGGCTAGCCACCAGGACCGAGAGCTGCTGGCCCATCTGGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGGCTAGCCACCAGGACCGAGAGCTGCTGGCCCATCTGGAAAAG  600

seq1  GAGCTGAAGAAGGTGAGCGATGTGGCTGGTGAGACCCAGGGCAGCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAGAAGGTGAGCGATGTGGCTGGTGAGACCCAGGGCAGCCTGAA  650

seq1  TGTGGCTCAGGATGAGCTGGTGACCTTCAGCGAGGAGCTGGCCAACCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCAGGATGAGCTGGTGACCTTCAGCGAGGAGCTGGCCAACCTCT  700

seq1  ACCACCATGTGTGCATGTGCAACAACGAGACGCCCAACCGTGTCATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGTGTGCATGTGCAACAACGAGACGCCCAACCGTGTCATGCTC  750

seq1  GACTATTATCGTGAGGGCCAGGGCAAGGCTGGCCGCACCAGCCCAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTATCGTGAGGGCCAGGGCAAGGCTGGCCGCACCAGCCCAGAGGG  800

seq1  CCGCGGGCGCCGGTCACCTGTCCTCTTGCCCAAGGGGCTGTTGGCCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGGCGCCGGTCACCTGTCCTCTTGCCCAAGGGGCTGTTGGCCACAG  850

seq1  AGGTGGGCCGAGCAGATGGTGGGACTGGGGACAACAGTCCTTCACCCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCCGAGCAGATGGTGGGACTGGGGACAACAGTCCTTCACCCAGT  900

seq1  TCTTCACTGCCGTCACCTCTGAGTGACCCCCGCCGGGAACCTATGAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGCCGTCACCTCTGAGTGACCCCCGCCGGGAACCTATGAACAT  950

seq1  CTACAACCTGATCGCCATCATCCGAGACCAGATCAAGCACCTGCAGGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACCTGATCGCCATCATCCGAGACCAGATCAAGCACCTGCAGGCAG  1000

seq1  CCGTGGACCGTACGACCGAGCTGTCCCGGCAGCGGATTGCCTCGCAGGAG  1050
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCGTGGACCGTACGACCGAGCTGTTCCGGCAGCGGATTGCCTCGCAGGAG  1050

seq1  CTGGGCCCTGCTGTGGACAAGGACAAGGAAGCACTCATGGAGGAGATCCT  1100
      || || |||||||| ||||  ||||||||||| ||||||||||| ||| |
seq2  CT-GGTCCTGCTGT-GACA--GACAAGGAAGCCCTCATGGAGGA-ATCTT  1095

seq1  CAAGC-TGAAG-TCCCTGCTGAGTACCAAGCGGGAGCAGATCACCACA-C  1147
      ||||| ||||| ||||||||||||| ||||||||||||||||| |||| |
seq2  CAAGCTTGAAGTTCCCTGCTGAGTAACAAGCGGGAGCAGATCA-CACACC  1144

seq1  TGCGCACCGTGCTCA  1162
      ||| |||||||||||
seq2  TGCCCACCGTGCTCA  1159

seq1: chr13_49601920_49603021
seq2: B6Ng01-070H21.g_65_1159 (reverse)

seq1  AAGAGCTCCTGGTAAGTCAGAGACTGGGACTCACTTAAGAGAAGAACAGG  50
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  AAGAGCTCCT-GTAAGTCAGAGACTGGGACTCACTTAAGAGAAGAACA-G  48

seq1  ATACATTCAGACATGGAGAGAGGGGCTGGGGATGAAGTGGAGAGATCTTT  100
      ||||| |||||||| |||||  ||||| ||||||||||| | ||||| ||
seq2  ATACA-TCAGACAT-GAGAGGAGGGCT-GGGATGAAGTGAAAAGATC-TT  94

seq1  GAATAAGTATGGGAAGGAATTAACAAAAAGTTCATCAGAGAAATACATTT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAT-AGTATGGGAAGGAATTAACAAAAAGTTCATCAGAGAAATACATTT  143

seq1  TAGGGTTTAAAGAATTTCAAGAAGGAAAAAACCAACAATTTAGTACTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTAAAGAATTTCAAGAAGGAAAAAACCAACAATTTAGTACTAGT  193

seq1  TCATAGCAAAACTTATGAATGTTAAAGACATACTAAAATATAGAACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAAAACTTATGAATGTTAAAGACATACTAAAATATAGAACATTT  243

seq1  TCACAAGAAGGCAGAATAAAAAGCCTTCCTACAAAGGGATGAGAATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAAGGCAGAATAAAAAGCCTTCCTACAAAGGGATGAGAATTGAA  293

seq1  TTCAAGTTGACTTCTCCATAACACAACAAGAATGGACCAAGTTGGGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTGACTTCTCCATAACACAACAAGAATGGACCAAGTTGGGTGTA  343

seq1  GTAACTAACACCTGCACTCCTAACACTTGGAGGAAATGACAGAAGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAACACCTGCACTCCTAACACTTGGAGGAAATGACAGAAGGATCA  393

seq1  CGACAAGTTCAAGGTTAGCCTAGTCTACATTGTAGCTCTAGGCTAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAGTTCAAGGTTAGCCTAGTCTACATTGTAGCTCTAGGCTAGCCAT  443

seq1  GGCTATATAGCAAGACCCTGTATCAAAGCAAAAGCACAAGGAAACAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATAGCAAGACCCTGTATCAAAGCAAAAGCACAAGGAAACAGTGT  493

seq1  GCAAAAGGAAAACAGTCAATCAGGATCTGAAAAGTAATCAGGGAAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGAAAACAGTCAATCAGGATCTGAAAAGTAATCAGGGAAGATGA  543

seq1  TTTTGAAGCTATAACTATGGTTTTAACAAAACACAATATTTTCAGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGCTATAACTATGGTTTTAACAAAACACAATATTTTCAGATATT  593

seq1  TAAGATTCACAAATTTTTACCACATTTAACAGTAAGAAATACATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCACAAATTTTTACCACATTTAACAGTAAGAAATACATATTTCT  643

seq1  TCAAAGAACAAAAGGAATCGGAAGGCACTTCCTCTGGTAAGGAAAACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACAAAAGGAATCGGAAGGCACTTCCTCTGGTAAGGAAAACAGA  693

seq1  TCTACTCATCTGCTGAGAACGAACAGGAAGATGAGAAAAACAGCAGGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATCTGCTGAGAACGAACAGGAAGATGAGAAAAACAGCAGGGCC  743

seq1  AGTGTTTGGAATAAGAATGTCTCAGGTCTGAAATAGCTCTGCTTCTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGGAATAAGAATGTCTCAGGTCTGAAATAGCTCTGCTTCTAGAA  793

seq1  ACATCTGTGGATTCCAGAAAAAGTTAACAGAGTTTTAAAATAGCTTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGGATTCCAGAAAAAGTTAACAGAGTTTTAAAATAGCTTCACA  843

seq1  AGGCTGAGGAGAAACACAAACAAAGATGAGGGCCAAGCAGTCGGGGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGAGAAACACAAACAAAGATGAGGGCCAAGCAGTCGGGGTGAT  893

seq1  GACACTGGTGCTTGTGACATTAGCAAAACTAGACCCATGGTGTGATGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGTGCTTGTGACATTAGCAAAACTAGACCCATGGTGTGATGATA  943

seq1  TTGATACAGTGATGTCCAGCTTCAAATCACTAGATGCATTATTGACAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAGTGATGTCCAGCTTCAAATCACTAGATGCATTATTGACAGTG  993

seq1  TCTGTAACACTACACTCAAAGCATGAAAATTTTTAGACAGAAAATACATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACACTACACTCAAAGCATGAAAATTTTTAGACAGAAAATACATC  1043

seq1  ATCTTAGGTTCAAACATTTGATGAGATTTTATTCAATTTCTGGCATGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGTTCAAACATTTGATGAGATTTTATTCAATTTCTGGCATGAAT  1093

seq1  TC  1102
      ||
seq2  TC  1095