BAC Information

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BAC

Clone NameB6Ng01-071P02
Chromosome13 (Build37)
Map Location 103,717,715 - 103,842,556
singlet/doubletdoublet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071P02.bB6Ng01-071P02.g
ACCDH889499DH889500
length1,1261,098
definitionDH889499|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P02, 5' end.DH889500|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,717,715 - 103,718,846)(103,841,462 - 103,842,556)
sequence
gaattcattctccttctctcctggtctgttattatattagagctaactgc
tttcctgtttgtcttccttgagggaaggtcacgggcagcctggccactac
tgttgggtcgttattgacaatcaatatgtgttggtaagaggaataagcag
atcaacaatgtaagtctgcatataggtgacttcaaatctttcccagaagc
agggaagatacagataataaaggaggctggggcttttacagctgctgtat
aacctactggagtctttgtttccatgcctaaactctcaggggacattttt
ttctaccttggtgatataggaaaagtggcttcacatttggaaacgaattc
tgcctttgttctgcccgccaccccccaatctcttattacacacattattg
tctcagctgtccacatcttgaccaagttgggcctgctctcttgcctattc
taaaggcccctcatgactacacagacacactcagagcaattataagaagg
caaagaagtaagtctcgaaaccattccaggcctactgattgcctaaggct
ggcatagaggacttgcctggcttggtaactgggaaaggaaagcaggcaca
ggacacacctcagggagcctcaacagacaggagcacttcagatttcccag
ggggcaaatgggcatccctctaggatatcatgaggaccactgcccttcct
gttagaagccttttttttctcttagcggttttaccattcccttctcaact
ctgccctgtaaaaggtccctgaatgcacaaaactgtacaaacaggcgtca
gtcagccttcagtggcactctactcatgatcaaaactccatcttcatttg
gctttaaatccacttgcctggtcctcctcctacccctgtcttttccagct
tcccatgtatggtgtgttcatatgttggagactcagaatctgtcctgtgg
ccacttcatccaacccctgggccaggagtttcaactccacttctctagcc
taggaagccaaacctgtcacagcattcccctactaaagctgctatcaaca
actaaacacgctcccgtttcttcactgagtctctcttacagattttctga
ctcttcaagagaaccaacacttttgg
gaattcatagctgcagagatggttgtaaatagagagtgggaaatcacagg
actgtgtttctttctgtcatgtcaaaagaaaatagattgatttttttttt
ttaaacatggaagggatgggttttaaattatctacaatttggagccttat
tatgcatggagtttctagatggtaattaacacctttctagtcctgggaat
tttcaagtgttaaagagtaatttcttctttttgggaggatgcaatactcc
ttactatatttaaggacatagaaagacagggaggggataggaagttagtt
gccataattattctgggaattgtttttttaagaaaacaacatgaaatgtt
gcactattcgaactttttttttaataaaggactttagggctcataaattt
ctaatagaaatctttgagggagtttatagtttctgtttgtgtgctcctcc
tgacatcagccatctatcagtgatctttggtcccaactgaaatgagcatg
aatctcatttctgagacttattaactgtgacctgaagccaatcacttaat
cactgcaggttagctttcgccttctcattcacaaagcagtgtcggtcaca
tcaggatgcctttgagggtctggtgaggtagtgacctcatggttaaagca
gttactcagtaccaaattgtaaacgtcttttaaattgggattgctgttat
cattgttattaggtaaatgatttacttaaatagttattaggtaaataata
acctagtaggtaaattcgtattgctgtgacaaagtaccagatggaaggaa
ctgaaggaaggaagggtttattgaggctcatggtttaaagggtcccatcc
atcgcggtagagaagtcatggcagcaggattattaagttgttaggcattc
tgcatctgcagtcaaggagcataaagcaatgtatgggcactttctcattt
tgatgcagcccaggactccagcctatgaaatgcatccatgacacttaggg
tgagtcatcccaccttcaagtatgaaaatctagacagttcttacagtgaa
aagcttggaggcctatcccataggtacttgtgatctatccaggtcgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103717715_103718846
seq2: B6Ng01-071P02.b_46_1171

seq1  GAATTCATTCTCCTTCTCTCCTGGTCTGTTATTATATTAGAGCTAACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCCTTCTCTCCTGGTCTGTTATTATATTAGAGCTAACTGC  50

seq1  TTTCCTGTTTGTCTTCCTTGAGGGAAGGTCACGGGCAGCCTGGCCACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTGTCTTCCTTGAGGGAAGGTCACGGGCAGCCTGGCCACTAC  100

seq1  TGTTGGGTCGTTATTGACAATCAATATGTGTTGGTAAGAGGAATAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTCGTTATTGACAATCAATATGTGTTGGTAAGAGGAATAAGCAG  150

seq1  ATCAACAATGTAAGTCTGCATATAGGTGACTTCAAATCTTTCCCAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAATGTAAGTCTGCATATAGGTGACTTCAAATCTTTCCCAGAAGC  200

seq1  AGGGAAGATACAGATAATAAAGGAGGCTGGGGCTTTTACAGCTGCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATACAGATAATAAAGGAGGCTGGGGCTTTTACAGCTGCTGTAT  250

seq1  AACCTACTGGAGTCTTTGTTTCCATGCCTAAACTCTCAGGGGACATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTGGAGTCTTTGTTTCCATGCCTAAACTCTCAGGGGACATTTTT  300

seq1  TTCTACCTTGGTGATATAGGAAAAGTGGCTTCACATTTGGAAACGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTGGTGATATAGGAAAAGTGGCTTCACATTTGGAAACGAATTC  350

seq1  TGCCTTTGTTCTGCCCGCCACCCCCCAATCTCTTATTACACACATTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTTCTGCCCGCCACCCCCCAATCTCTTATTACACACATTATTG  400

seq1  TCTCAGCTGTCCACATCTTGACCAAGTTGGGCCTGCTCTCTTGCCTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGTCCACATCTTGACCAAGTTGGGCCTGCTCTCTTGCCTATTC  450

seq1  TAAAGGCCCCTCATGACTACACAGACACACTCAGAGCAATTATAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCCCTCATGACTACACAGACACACTCAGAGCAATTATAAGAAGG  500

seq1  CAAAGAAGTAAGTCTCGAAACCATTCCAGGCCTACTGATTGCCTAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTAAGTCTCGAAACCATTCCAGGCCTACTGATTGCCTAAGGCT  550

seq1  GGCATAGAGGACTTGCCTGGCTTGGTAACTGGGAAAGGAAAGCAGGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGAGGACTTGCCTGGCTTGGTAACTGGGAAAGGAAAGCAGGCACA  600

seq1  GGACACACCTCAGGGAGCCTCAACAGACAGGAGCACTTCAGATTTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACCTCAGGGAGCCTCAACAGACAGGAGCACTTCAGATTTCCCAG  650

seq1  GGGGCAAATGGGCATCCCTCTAGGATATCATGAGGACCACTGCCCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAATGGGCATCCCTCTAGGATATCATGAGGACCACTGCCCTTCCT  700

seq1  GTTAGAAGCCTTTTTTTTCTCTTAGCGGTTTTACCATTCCCTTCTCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGCCTTTTTTTTCTCTTAGCGGTTTTACCATTCCCTTCTCAACT  750

seq1  CTGCCCTGTAAAAGGTCCCTGAATGCACAAAACTGTACAAACAGGCGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTAAAAGGTCCCTGAATGCACAAAACTGTACAAACAGGCGTCA  800

seq1  GTCAGCCTTCAGTGGCACTCTACTCATGATCAAAACTCCATCTTCATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTCAGTGGCACTCTACTCATGATCAAAACTCCATCTTCATTTG  850

seq1  GCTTTAAATCCACTTGCCTGGTCCTCCTCCTACCCCTGTCTTTTCCAGC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTTTAAATCCACTTGCCTGGTCCTCCTCCTACCCCTGTCTTTTCCAGCT  900

seq1  TCCCATGTATGGTGTGTTCATATG-TGGAGACTCAGAATCTGTCCTGTGG  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCATGTATGGTGTGTTCATATGTTGGAGACTCAGAATCTGTCCTGTGG  950

seq1  CCACTTCATCCAACCCCTGGGCCAGGAGTTTCAACTCCACTTCTCTAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCATCCAACCCCTGGGCCAGGAGTTTCAACTCCACTTCTCTAGCC  1000

seq1  TAGGAAGCCAAAACCTGTCACAGCA-TCCCCTACTAAAGCTGCTAACAAA  1047
      ||||||||| ||||||||||||||| ||||||||||||||||||| ||| 
seq2  TAGGAAGCC-AAACCTGTCACAGCATTCCCCTACTAAAGCTGCTATCAA-  1048

seq1  CCAACAAAACACGCCCCGGTTTCCTTCCACGAGTCTCCTCCTCACCAGAT  1097
       |||| |||||||| || |||| ||||   |||||| ||| |   |||||
seq2  -CAACTAAACACGCTCCCGTTT-CTTCACTGAGTCT-CTCTT--ACAGAT  1093

seq1  TTCCTGACCTCTTCAAGAGAACCAACAACTTTTGG  1132
      || |||| |||||||||||||||||| ||||||||
seq2  TTTCTGA-CTCTTCAAGAGAACCAAC-ACTTTTGG  1126

seq1: chr13_103841462_103842556
seq2: B6Ng01-071P02.g_67_1164 (reverse)

seq1  ATCGA-CTTGATAGGATCTACAAGTACCTATGGGATAGGCCTCCAAGCTT  49
      ||||| || |||| |||| |||||||||||||||||||||||||||||||
seq2  ATCGACCTGGATA-GATC-ACAAGTACCTATGGGATAGGCCTCCAAGCTT  48

seq1  TTCACTGT-AGAACTGTCTAGATTTCATTACTTGAA-GTGGGATGACTCA  97
      |||||||| ||||||||||||||||   |||||||| |||||||||||||
seq2  TTCACTGTAAGAACTGTCTAGATTTTCATACTTGAAGGTGGGATGACTCA  98

seq1  CCCTAAGTGTCATGGATGCATTTCATAGGCTGGAGTCCTGGGCTGCATCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTGTCATGGATGCATTTCATAGGCTGGAGTCCTGGGCTGCATCA  148

seq1  AAATGAGAAAGTGGCCATACATTGCTTTCTGCTCCCTGACTGCAGATGCA  197
      ||||||||||||| |||||||||||||| |||||| ||||||||||||||
seq2  AAATGAGAAAGTGCCCATACATTGCTTTATGCTCCTTGACTGCAGATGCA  198

seq1  GAATGCCTAACAACTTAATAATCCTGCTGCCATGACTTCTCTACCGCGAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTAACAACTTAATAATCCTGCTGCCATGACTTCTCTACCGCGAT  248

seq1  GGATGGGACCC-TTAAACCATGAGCCTCAATAAACCCTTCCTTCCTTCAG  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGACCCTTTAAACCATGAGCCTCAATAAACCCTTCCTTCCTTCAG  298

seq1  TTCCTTCCATCTGGTACTTTGTCACAGCAATACGAATTTACCTACTAGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCATCTGGTACTTTGTCACAGCAATACGAATTTACCTACTAGGT  348

seq1  TATTATTTACCTAATAACTATTTAAGT-AATCATTTACCTAATAACAATG  395
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATTATTTACCTAATAACTATTTAAGTAAATCATTTACCTAATAACAATG  398

seq1  ATAACAGCAATCCCAATTTAAAAGACGTTTACAATTTGGTACTGAGTAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCAATCCCAATTTAAAAGACGTTTACAATTTGGTACTGAGTAAC  448

seq1  TGCTTTAACCATGAGGTCACTACCTCACCAGACCCTCAAAGGCATCCTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAACCATGAGGTCACTACCTCACCAGACCCTCAAAGGCATCCTGA  498

seq1  TGTGACCGACACTGCTTTGTGAATGAGAAGGCGAAAGCTAACCTGCAGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCGACACTGCTTTGTGAATGAGAAGGCGAAAGCTAACCTGCAGTG  548

seq1  ATTAAGTGATTGGCTTCAGGTCACAGTTAATAAGTCTCAGAAATGAGATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGATTGGCTTCAGGTCACAGTTAATAAGTCTCAGAAATGAGATT  598

seq1  CATGCTCATTTCAGTTGGGACCAAAGATCACTGATAGATGGCTGATGTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCATTTCAGTTGGGACCAAAGATCACTGATAGATGGCTGATGTCA  648

seq1  GGAGGAGCACACAAACAGAAACTATAAACTCCCTCAAAGATTTCTATTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCACACAAACAGAAACTATAAACTCCCTCAAAGATTTCTATTAG  698

seq1  AAATTTATGAGCCCTAAAGTCCTTTATTAAAAAAAAAGTTCGAATAGTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATGAGCCCTAAAGTCCTTTATTAAAAAAAAAGTTCGAATAGTGC  748

seq1  AACATTTCATGTTGTTTTCTTAAAAAAACAATTCCCAGAATAATTATGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCATGTTGTTTTCTTAAAAAAACAATTCCCAGAATAATTATGGC  798

seq1  AACTAACTTCCTATCCCCTCCCTGTCTTTCTATGTCCTTAAATATAGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTTCCTATCCCCTCCCTGTCTTTCTATGTCCTTAAATATAGTAA  848

seq1  GGAGTATTGCATCCTCCCAAAAAGAAGAAATTACTCTTTAACACTTGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATTGCATCCTCCCAAAAAGAAGAAATTACTCTTTAACACTTGAAA  898

seq1  ATTCCCAGGACTAGAAAGGTGTTAATTACCATCTAGAAACTCCATGCATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGGACTAGAAAGGTGTTAATTACCATCTAGAAACTCCATGCATA  948

seq1  ATAAGGCTCCAAATTGTAGATAATTTAAAACCCATCCCTTCCATGTTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTCCAAATTGTAGATAATTTAAAACCCATCCCTTCCATGTTTAA  998

seq1  AAAAAAAAAATCAATCTATTTTCTTTTGACATGACAGAAAGAAACACAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCAATCTATTTTCTTTTGACATGACAGAAAGAAACACAGT  1048

seq1  CCTGTGATTTCCCACTCTCTATTTACAACCATCTCTGCAGCTATGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTTCCCACTCTCTATTTACAACCATCTCTGCAGCTATGAATTC  1098