BAC Information

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BAC

Clone NameB6Ng01-074E03
Chromosome13 (Build37)
Map Location 22,337,989 - 22,339,161
singlet/doubletsinglet
Overlap genenone
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
Downstream geneV1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074E03.bB6Ng01-074E03.g
ACCDH891155DH891156
length1,1641,236
definitionDH891155|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E03, 5' end.DH891156|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaaattatgtcattattttttaagctcttttaaaatgggact
gctattaggtcctttctgatagtcaaaacttcaatgaattcttggccagt
ccctaagtttcaccagtaattgcttctgagataataaacaattattctat
tacttagagcacattccaaaagattgtaaaaccattaaccaaatgtctta
aaaggggaattaataatttattacaggtggtagaacagaatataaagcat
ttactggatttatctatataaatttcagtcatagcttagttatggttttt
aattgttcaatttaatttaaattgttcaatttatgatttgaatttatgtg
taaacctgtgataaactttttaccatgtgatcatgtattcggaaagatgt
ataagtgctgagtacaagagaagaggggcacagctccttatccccttttc
ttagcaattctccttgttcctacttttcttggcattattctccttatgtt
cctcttcttagcactccttatcctctttttcttagatcccacctattccc
ttttcctagatcccttatctcccttttcttatgagcctgtttcccctttt
ttcttcgaagctttcataggaaactttttacaacttagagataaatacta
aaatcactttcaaaagtgtccctttttcttttccattttttattaggtat
ttagctcatttatatttccaatgctataccaaaagtcccccatacccacc
cacccccactcccctatccacccactccccctttttggccctggcgttcc
cctgtactggggcatataaagtttgcaagtccaatgggcctctctttgca
gtgatggccgactaggccatcttttgatacatatgcagctagagacaaga
gctccggggtactgcttagttcatattgttgttccacctatagggttgca
gttccctttagttccttgggtgctttctctagttcctccattgggggccc
tgtggtccattcaatagctgactggtgagcatccacttcttgtgttgcta
aggcctggcataagtctcacaagagaagctatatctggtctttcagcaaa
tcttgctatgtatgcaatgggttcagcgttggagtgatcatggatagatc
ttggagtggcaatc
gaattccatatttttaaattctattgcttatactcatttaaatttacaac
ttagttttatttattttctgaatataacttctaattcattttaatttgga
ctcaattctaaatttacagagaaaagcccagaataacaccagtttaagct
accaaatttcagactgtcctttctcacattttatcaatggtcatatattt
cctctttattcttaatgctgtcatggttgagactgaatacattgctcttc
accccatcccacgttcttatatcactttcttttgagtcagatatcaatta
ttgacattgaaagttcttgtttagcctggttctttatgttagatacttta
aagcctttagtaaaaaagctctgaaactagatgtattagtcagggcttag
tgttccaatgaaacagcatcactaagacaatttggtaccagtgaggtgag
gtattgctgtggcagacatggttatattttgaaaaagattgtggaaggac
tttggaactttggactagaaaagccattgagtattgagacatctgtagga
tgttctataggagcttggaagataagagtgttgagagaagtacagaagat
gcctggtttgtgacttttcaaaacgaagatgaaagactataagggccatt
tgctattttcatttaatattctgctgtacttgttaggaagggataaagac
tctattgtgatgaacaagataccagaactaccaaagtaaaacctttgtat
tactgggataattgatgctagttagctagtgctaagaaatatgtgataat
taagaagagaccatcattactcaattccccaataaaaagatatagactaa
cagactggctacacaaacaggatccaacattttgctgcttacaggaaacc
cgtctcaggaaaagacagacactacctcagagtgaaaggctggaaacaat
ttccaagcaaatggtctgaagaaacagcttgagtagccattctatatcga
ataaatctacttcaacccaaagttatcaaaaaaaacagagggactcatac
tcatcaaagtaaatctcagagactctcatctgatatctatgctcaatgca
gcagcccaattcattaagaactttagtagcttaaggcaacatgccagctc
taccacaataatattggacttcacacacacacactttcatcaatgtcaga
tgttgaacgggaacactatactgggagaatgtatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22337989_22339161
seq2: B6Ng01-074E03.b_43_1206

seq1  GAATTCCTAAAATTATGTCATTATTTTTTAAGCTCTTTTAAAATGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAATTATGTCATTATTTTTTAAGCTCTTTTAAAATGGGACT  50

seq1  GCTATTAGGTCCTTTCTGATAGTCAAAACTTCAATGAATTCTTGGCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAGGTCCTTTCTGATAGTCAAAACTTCAATGAATTCTTGGCCAGT  100

seq1  CCCTAAGTTTCACCAGTAATTGCTTCTGAGATAATAAACAATTATTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTTTCACCAGTAATTGCTTCTGAGATAATAAACAATTATTCTAT  150

seq1  TACTTAGAGCACATTCCAAAAGATTGTAAAACCATTAACCAAATGTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAGCACATTCCAAAAGATTGTAAAACCATTAACCAAATGTCTTA  200

seq1  AAAGGGGAATTAATAATTTATTACAGGTGGTAGAACAGAATATAAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAATTAATAATTTATTACAGGTGGTAGAACAGAATATAAAGCAT  250

seq1  TTACTGGATTTATCTATATAAATTTCAGTCATAGCTTAGTTATGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATTTATCTATATAAATTTCAGTCATAGCTTAGTTATGGTTTTT  300

seq1  AATTGTTCAATTTAATTTAAATTGTTCAATTTATGATTTGAATTTATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCAATTTAATTTAAATTGTTCAATTTATGATTTGAATTTATGTG  350

seq1  TAAACCTGTGATAAACTTTTTACCATGTGATCATGTATTCGGAAAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGTGATAAACTTTTTACCATGTGATCATGTATTCGGAAAGATGT  400

seq1  ATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCTCCTTATCCCCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCTCCTTATCCCCTTTTC  450

seq1  TTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCATTATTCTCCTTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCATTATTCTCCTTATGTT  500

seq1  CCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAGATCCCACCTATTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAGATCCCACCTATTCCC  550

seq1  TTTTCCTAGATCCCTTATCTCCCTTTTCTTATGAGCCTGTTTCCCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGATCCCTTATCTCCCTTTTCTTATGAGCCTGTTTCCCCTTTT  600

seq1  TTCTTCGAAGCTTTCATAGGAAACTTTTTACAACTTAGAGATAAATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGAAGCTTTCATAGGAAACTTTTTACAACTTAGAGATAAATACTA  650

seq1  AAATCACTTTCAAAAGTGTCCCTTTTTCTTTTCCATTTTTTATTAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTTTCAAAAGTGTCCCTTTTTCTTTTCCATTTTTTATTAGGTAT  700

seq1  TTAGCTCATTTATATTTCCAATGCTATACCAAAAGTCCCCCATACCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCATTTATATTTCCAATGCTATACCAAAAGTCCCCCATACCCACC  750

seq1  CACCCCCACTCCCCTATCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACTCCCCTATCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCC  800

seq1  CCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCA  850

seq1  GTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGA  900

seq1  GCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCA  950

seq1  GTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCC  1000

seq1  TGTGGTCCATTCAATAGCTGACT-GTGAGCATCCACTTCTGTGT-TTGCT  1048
      ||||||||||||||||||||||| |||||||||||||||| ||| |||||
seq2  TGTGGTCCATTCAATAGCTGACTGGTGAGCATCCACTTCT-TGTGTTGCT  1049

seq1  AGGCCCTGGCAT-AGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAG  1097
      | | |||||||| |||||||||||||| ||||||||||||   |||||||
seq2  AAGGCCTGGCATAAGTCTCACAAGAGA-AGCTATATCTGG--TCTTTCAG  1096

seq1  CAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGTTGATCAT  1147
      | ||||||||||| ||||||||||||  |||||| |||||   |||||||
seq2  C-AAATCTTGCTA-TGTATGCAATGGGTTCAGCG-TTGGA--GTGATCAT  1141

seq1  GGGATGGATCTCTGGATGTGGCAATC  1173
       |||| ||||| |||| |||||||||
seq2  -GGATAGATCT-TGGA-GTGGCAATC  1164