BAC Information

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BAC

Clone NameB6Ng01-074G03
Chromosome13 (Build37)
Map Location 80,871,561 - 81,015,347
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074G03.bB6Ng01-074G03.g
ACCDH891247DH891248
length5661,173
definitionDH891247|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G03, 5' end.DH891248|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,014,777 - 81,015,347)(80,871,561 - 80,872,735)
sequence
tttctgagtgactcctgttaagggctcaataatggactaggttaattaga
gattaagtaattttaccttacattaatcatcctcctgtcagaataaatta
acctctttaagtcccattttctggaattcccaatgtccatagatatcatt
cttgaggcatttgatagcttcctaaaatttaaaactcatttgaactttga
aatgccattaattaataggattattaaacttaataatcacagggattttc
tcagatcatggaagataagcataattctagctcctttaaaggcttgtttc
ttccactggaatgatctgtaaactgcgttctctccttcctttcttaatgt
agaatgggagttaacttataaactttaagttgaaagaaaatggagtagac
ccccaatggactctggtaatggagggctaatggagggcttggtgtgtggt
gtttggattgggtttaaataagagctgtagtagctgagtttacattcctt
cgccaatgtgaacttcatttatttatttatttatttatttatttatttat
ttatttaatttgtaga
gaattcttttaaggaaggtgggacaggaatgctgaaccaagcaccaggct
agtcactacattgacagtgcagtaaggggaccagtaaaccctgatgccag
tttctccatacttttcaaggtgcagctgtgctgggctgagagaacatgga
gtatgtgcaagcactagtaagtgggtcaaagagaaatattggaaaatgcc
tgactctccatttctccttccctggcatcttcagtttacttaaattcatc
ttaaatatcagtgtgtttttattcccagtgagttgtcctaaattagactc
taaaaagagaattctaaatgagagagagttctaagtggaaatcaaaacaa
cctgtttctcctcatgagtgtccccttgaacactggctaattttgattat
tgaacgcttatttctctattgttctgctatcatctccattgagatgcctc
agcacatgttttgatttgctctcacattctgatttagaaaaacttccaag
gttctgagccaccaaatatcccacatgacaaatcacaagtgaaacataaa
aaagtcaagtttcaaacacatggcatccttctgcctcaatatgtcatagc
atagcatattcttttcatagatctttgcttaagaatgcacttgtatttct
gacaatgttttctcatgtcaacataagccattagaggagcactggaggac
catggaaatgccttctcagttagatggaagtttttttcaactttattgat
tgtgaatttcacatcatgcaatccagtcccacttactcatctctccatcc
cttcatatccaccctatgcccttacaacctctccatcaaaaacaaaatta
aaaaaataaaataaacaaaaaaggcatatcatagaaagcatcatcatgga
agctgtagtgtgctgcagtgtgtgccacagtatacctttttgtccacaca
tttttcacttgcaaatatgattgcaatgagtcttttggtccagttccagg
ctctggcttctgctacaccacagtactggatctcactgggacttccttca
gttgccctgttgttgccctgcatcctgaaacttgtagctctagaatcagc
aggatcaaatgctccaacagctcataagatgaagggccagatttgggatg
gaccactcaagccctgaatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81014777_81015347
seq2: B6Ng01-074G03.b_44_615 (reverse)

seq1  TCTACAAA-TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAATTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  50

seq1  GAAGTTCACATTGGCGAAGGAATGTAAACTCAGCTACTACAGCTCTTATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCACATTGGCGAAGGAATGTAAACTCAGCTACTACAGCTCTTATT  100

seq1  TAAACCCAATCCAAACACCACACACCAAGCCCTCCATTAGCCCTCCATTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAATCCAAACACCACACACCAAGCCCTCCATTAGCCCTCCATTA  150

seq1  CCAGAGTCCATTGGGGGTCTACTCCATTTTCTTTCAACTTAAAGTTTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCCATTGGGGGTCTACTCCATTTTCTTTCAACTTAAAGTTTATA  200

seq1  AGTTAACTCCCATTCTACATTAAGAAAGGAAGGAGAGAACGCAGTTTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTCCCATTCTACATTAAGAAAGGAAGGAGAGAACGCAGTTTACA  250

seq1  GATCATTCCAGTGGAAGAAACAAGCCTTTAAAGGAGCTAGAATTATGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTCCAGTGGAAGAAACAAGCCTTTAAAGGAGCTAGAATTATGCTT  300

seq1  ATCTTCCATGATCTGAGAAAATCCCTGTGATTATTAAGTTTAATAATCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCATGATCTGAGAAAATCCCTGTGATTATTAAGTTTAATAATCCT  350

seq1  ATTAATTAATGGCATTTCAAAGTTCAAATGAGTTTTAAATTTTAGGAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAATGGCATTTCAAAGTTCAAATGAGTTTTAAATTTTAGGAAGC  400

seq1  TATCAAATGCCTCAAGAATGATATCTATGGACATTGGGAATTCCAGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGCCTCAAGAATGATATCTATGGACATTGGGAATTCCAGAAAA  450

seq1  TGGGACTTAAAGAGGTTAATTTATTCTGACAGGAGGATGATTAATGTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTAAAGAGGTTAATTTATTCTGACAGGAGGATGATTAATGTAAG  500

seq1  GTAAAATTACTTAATCTCTAATTAACCTAGTCCATTATTGAGCCCTTAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTACTTAATCTCTAATTAACCTAGTCCATTATTGAGCCCTTAAC  550

seq1  AGGAGTCACTCAGAAAGAATTC  571
      ||||||||||||||||||||||
seq2  AGGAGTCACTCAGAAAGAATTC  572

seq1: chr13_80871561_80872735
seq2: B6Ng01-074G03.g_68_1240

seq1  GAATTCTTTTAAGGAAGGTGGGACAGGAATGCTGAACCAAGCACCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAGGAAGGTGGGACAGGAATGCTGAACCAAGCACCAGGCT  50

seq1  AGTCACTACATTGACAGTGCAGTAAGGGGACCAGTAAACCCTGATGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTACATTGACAGTGCAGTAAGGGGACCAGTAAACCCTGATGCCAG  100

seq1  TTTCTCCATACTTTTCAAGGTGCAGCTGTGCTGGGCTGAGAGAACATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATACTTTTCAAGGTGCAGCTGTGCTGGGCTGAGAGAACATGGA  150

seq1  GTATGTGCAAGCACTAGTAAGTGGGTCAAAGAGAAATATTGGAAAATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCAAGCACTAGTAAGTGGGTCAAAGAGAAATATTGGAAAATGCC  200

seq1  TGACTCTCCATTTCTCCTTCCCTGGCATCTTCAGTTTACTTAAATTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCCATTTCTCCTTCCCTGGCATCTTCAGTTTACTTAAATTCATC  250

seq1  TTAAATATCAGTGTGTTTTTATTCCCAGTGAGTTGTCCTAAATTAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCAGTGTGTTTTTATTCCCAGTGAGTTGTCCTAAATTAGACTC  300

seq1  TAAAAAGAGAATTCTAAATGAGAGAGAGTTCTAAGTGGAAATCAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGAATTCTAAATGAGAGAGAGTTCTAAGTGGAAATCAAAACAA  350

seq1  CCTGTTTCTCCTCATGAGTGTCCCCTTGAACACTGGCTAATTTTGATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTCCTCATGAGTGTCCCCTTGAACACTGGCTAATTTTGATTAT  400

seq1  TGAACGCTTATTTCTCTATTGTTCTGCTATCATCTCCATTGAGATGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGCTTATTTCTCTATTGTTCTGCTATCATCTCCATTGAGATGCCTC  450

seq1  AGCACATGTTTTGATTTGCTCTCACATTCTGATTTAGAAAAACTTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTTTTGATTTGCTCTCACATTCTGATTTAGAAAAACTTCCAAG  500

seq1  GTTCTGAGCCACCAAATATCCCACATGACAAATCACAAGTGAAACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGCCACCAAATATCCCACATGACAAATCACAAGTGAAACATAAA  550

seq1  AAAGTCAAGTTTCAAACACATGGCATCCTTCTGCCTCAATATGTCATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGTTTCAAACACATGGCATCCTTCTGCCTCAATATGTCATAGC  600

seq1  ATAGCATATTCTTTTCATAGATCTTTGCTTAAGAATGCACTTGTATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATATTCTTTTCATAGATCTTTGCTTAAGAATGCACTTGTATTTCT  650

seq1  GACAATGTTTTCTCATGTCAACATAAGCCATTAGAGGAGCACTGGAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTTTCTCATGTCAACATAAGCCATTAGAGGAGCACTGGAGGAC  700

seq1  CATGGAAATGCCTTCTCAGTTAGATGGAAGTTTTTTTCAACTTTATTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAATGCCTTCTCAGTTAGATGGAAGTTTTTTTCAACTTTATTGAT  750

seq1  TGTGAATTTCACATCATGCAATCCAGTCCCACTTACTCATCTCTCCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTCACATCATGCAATCCAGTCCCACTTACTCATCTCTCCATCC  800

seq1  CTTCATATCCACCCTATGCCCTTACAACCTCTCCATCAAAAACAAAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATCCACCCTATGCCCTTACAACCTCTCCATCAAAAACAAAATTA  850

seq1  AAAAAATAAAATAAACAAAAAAGGCATATCATAGAAAGCATCATCATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAATAAACAAAAAAGGCATATCATAGAAAGCATCATCATGGA  900

seq1  AGCTGTAGTGTGCTGCAGTGTGTGCCACAGTATACCTTTTTGTCCACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAGTGTGCTGCAGTGTGTGCCACAGTATACCTTTTTGTCCACACA  950

seq1  TTTTTCACTTGCAAATATTGATTGCAATGAGTC-TTTGGTCCAGTTCCAG  999
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TTTTTCACTTGCAAATA-TGATTGCAATGAGTCTTTTGGTCCAGTTCCAG  999

seq1  GCCTCTGGCTTCTGCTACACCAACAGTACTGGATCCTCACTGGGAC-TCT  1048
      | ||||||||||||||||||| |||||||||||| ||||||||||| || 
seq2  G-CTCTGGCTTCTGCTACACC-ACAGTACTGGAT-CTCACTGGGACTTCC  1046

seq1  CTCAGTTGGCCTGTTGTTGCCCTGCATCCTGGAAACCTTGTAGCTCTAG-  1097
       ||||||| ||||||||||||||||||||||  || ||||||||||||| 
seq2  TTCAGTTGCCCTGTTGTTGCCCTGCATCCTG--AAACTTGTAGCTCTAGA  1094

seq1  ATCAGCAGGATCAAATGCTCCAACAGCTCAT-AGATGA---GGCAGATTT  1143
      ||||||||||||||||||||||||||||||| ||||||   | |||||||
seq2  ATCAGCAGGATCAAATGCTCCAACAGCTCATAAGATGAAGGGCCAGATTT  1144

seq1  GGGGATGGACCAACTCAATGCCCTGGATCTGG  1175
       |||||||||| |||||| |||||| ||||||
seq2  -GGGATGGACC-ACTCAA-GCCCTGAATCTGG  1173