BAC Information

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BAC

Clone NameB6Ng01-074K06
Chromosome13 (Build37)
Map Location 64,582,567 - 64,726,522
singlet/doubletdoublet
Overlap gene1190003K10Rik, LOC218298, Ppia-ps13_866.1
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612
Downstream geneLOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074K06.bB6Ng01-074K06.g
ACCDH891426DH891427
length1,1421,156
definitionDH891426|Mus musculus domesticus DNA, BAC clone: B6Ng01-074K06, 5' end.DH891427|Mus musculus domesticus DNA, BAC clone: B6Ng01-074K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,582,567 - 64,583,735)(64,725,351 - 64,726,522)
sequence
gaattcactttattttcagatcatattgttaaaattttcaatattcatac
tagttttatttctgccagcatctctgtttgaaaaaaaaaaaacagagaaa
ggagatttcgtgaccaatttctggagttgtatggaaccagatttcattaa
ggtcattgcctcaagcaagctcagagaaaacatttagatttcaagatgag
gagagaatccagaaccagattatactttgtggatcttggaaacccggaga
ggggtgctaattcaaagagcttttttaatataaatcaacccaagaatccc
acccctgcactcaccctgtcttctctgtgaagaagaaagagctggataac
agttcccacgagcatgcacactgtggggtttgcatggaaatcctttctca
gatgggagaacaagtaggggaagctctgcctagcaagtcagtataactca
ggggaagtctttttcctcttagaaaaagatgtccttgatggtttgccaga
agcactcagttctcagggttagcctgcttttccttgtcatcaggattatc
cagcattctcagcctcttctccagcctctccttccattcttctctaagcc
tgaggaggagacaccatataggcagctggttagtgcatttgtcgccatat
ctcctgctccatttgttttccatttgcttctcataaatactgtccaaaga
agcccatggctcttgccaatgggtaaaaagcagggatagaatagaaaagc
tagaaaaataagtgaagactacaaataggtagtctttcatcagatttaat
ttagccttcccaaattaatactggactcaatgaaattccagtgaaacctc
cagctaaagtgtttttgtagttatcaacaagccggaagagcaggcatctg
tgggctcagctgcttggaggactgaaccaagaggactacttgagtctaga
gattgaagccagcctgggtaaacatagtaaaacttcattaaaaaacatca
ctcgatagtatgtggaaaagcagaaagaagtagatagcagaggatttgag
aaaatgagtgagactagagactgatttagtcttaatgatacgagtcacat
cagtacacaccctgaaaaaggaacagcgacgatcaatagaaa
gaattctgtatctttgaaggaggaatggaattcaatacatacataacatg
ataaggagcctcctaatttagatatgattccgaaactttacggtattttt
aaaacatcatttgtgtgtgtgtgtgtgtgtgtgagagagagagagagaca
gagacagagacagagacagacagagacagagagagagacagagagagaga
ggagtcaagatgttttgtgccaaacaggtttattaaaagtacaacatcct
gtatactgtttgcaaggggaaataggacagagtgagaagaagttatcaat
ggggcacaatcagcatgaagctagtcaagcaatgctgcacgaagggaaca
cacgatatttcaagtacatcacagaccaagcacatggcagccttagaact
gccaaccatggctttgcagacaccactgttgcttttcgtcgcttgctgca
gccatggtcaaccccaccgtgttctttgacatcacggctgatgacaagct
cttgggccgcgtctccttcgagctgtttgcagacaaagttccaaagacag
cagaaaaactttcaagccctgagcactggagagaaaggatttggctataa
ggcttcctcctttcacagaattattccaggattcatgtgtcagggtggtg
actttacatgccataatggcactggcggcaggtccatctatggagaaaaa
tttgagaatgagaacttcatcctgaagcatacaggtcctggcatcttgtc
catggcaaatgctggaccaaacacaaacggttcccagttttttatctgca
ctgccaagactgaatggctggatggcaagcatgtggtctttgggaaggag
aaagaaggcatgaacattgtggaagccatggagcgttttgggtccaggaa
tggcaagaccagcagagaccactatttccaactgtggacaactctaattt
ttttgacttgcggacgtttacccatcaaacattccttctgtagctcagga
gagcacccccaccccatctgctcccaaatgtcctgtatctctgctcctca
ctgaagttcttggggttcatattttcctcttcccctcagtctagctggat
ggcaaggttaagtttgattatgataaaactaaatagaaaaaagaactgca
accatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64582567_64583735
seq2: B6Ng01-074K06.b_42_1183

seq1  GAATTCACTTTATTTTCAGATCATATTGTTAAAATTTTCAATATTCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATTTTCAGATCATATTGTTAAAATTTTCAATATTCATAC  50

seq1  TAGTTTTATTTCTGCCAGCATCTCTGTTTGAAAAAAAAAAAACAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATTTCTGCCAGCATCTCTGTTTGAAAAAAAAAAAACAGAGAAA  100

seq1  GGAGATTTCGTGACCAATTTCTGGAGTTGTATGGAACCAGATTTCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTCGTGACCAATTTCTGGAGTTGTATGGAACCAGATTTCATTAA  150

seq1  GGTCATTGCCTCAAGCAAGCTCAGAGAAAACATTTAGATTTCAAGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTGCCTCAAGCAAGCTCAGAGAAAACATTTAGATTTCAAGATGAG  200

seq1  GAGAGAATCCAGAACCAGATTATACTTTGTGGATCTTGGAAACCCGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATCCAGAACCAGATTATACTTTGTGGATCTTGGAAACCCGGAGA  250

seq1  GGGGTGCTAATTCAAAGAGCTTTTTTAATATAAATCAACCCAAGAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTAATTCAAAGAGCTTTTTTAATATAAATCAACCCAAGAATCCC  300

seq1  ACCCCTGCACTCACCCTGTCTTCTCTGTGAAGAAGAAAGAGCTGGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCACTCACCCTGTCTTCTCTGTGAAGAAGAAAGAGCTGGATAAC  350

seq1  AGTTCCCACGAGCATGCACACTGTGGGGTTTGCATGGAAATCCTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCACGAGCATGCACACTGTGGGGTTTGCATGGAAATCCTTTCTCA  400

seq1  GATGGGAGAACAAGTAGGGGAAGCTCTGCCTAGCAAGTCAGTATAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGAACAAGTAGGGGAAGCTCTGCCTAGCAAGTCAGTATAACTCA  450

seq1  GGGGAAGTCTTTTTCCTCTTAGAAAAAGATGTCCTTGATGGTTTGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTCTTTTTCCTCTTAGAAAAAGATGTCCTTGATGGTTTGCCAGA  500

seq1  AGCACTCAGTTCTCAGGGTTAGCCTGCTTTTCCTTGTCATCAGGATTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGTTCTCAGGGTTAGCCTGCTTTTCCTTGTCATCAGGATTATC  550

seq1  CAGCATTCTCAGCCTCTTCTCCAGCCTCTCCTTCCATTCTTCTCTAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTCAGCCTCTTCTCCAGCCTCTCCTTCCATTCTTCTCTAAGCC  600

seq1  TGAGGAGGAGACACCATATAGGCAGCTGGTTAGTGCATTTGTCGCCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAGACACCATATAGGCAGCTGGTTAGTGCATTTGTCGCCATAT  650

seq1  CTCCTGCTCCATTTGTTTTCCATTTGCTTCTCATAAATACTGTCCAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTCCATTTGTTTTCCATTTGCTTCTCATAAATACTGTCCAAAGA  700

seq1  AGCCCATGGCTCTTGCCAATGGGTAAAAAGCAGGGATAGAATAGAAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGGCTCTTGCCAATGGGTAAAAAGCAGGGATAGAATAGAAAAGC  750

seq1  TAGAAAAATAAGTGAAGACTACAAATAGGTAGTCTTTCATCAGATTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAAGTGAAGACTACAAATAGGTAGTCTTTCATCAGATTTAAT  800

seq1  TTAGCCTTCCCAAATTAATACTGGACTCAATGAAATTCCAGTGAAACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTCCCAAATTAATACTGGACTCAATGAAATTCCAGTGAAACCTC  850

seq1  CAGCTAAAGTGTTTTTGTAGTTATCAACAAGCCGGAAGAGCAGGCATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAGTGTTTTTGTAGTTATCAACAAGCCGGAAGAGCAGGCATCTG  900

seq1  TGGGCTCAGCTGCTTGGAGGACTGAACCAAGAGGACTACTTGAGTCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGGCTCAGCTGCTTGGAGGACTGAACCAAGAGGACTACTTGAGTCT-AG  949

seq1  AGATTGAAGCCAGCCTGGGTAAACATAGTAAAACTTCATTAAAAAACAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATTGAAGCCAGCCTGGGTAAACATAGTAAAACTTCATTAAAAAAC-AT  998

seq1  CACTCGATAGTATGTGGAAAAGCAAGAAAAGAAGTAGATTAGCCAGAAGA  1050
      ||||||||||||||||||||||||   ||||||||||| ||| |||| ||
seq2  CACTCGATAGTATGTGGAAAAGCA--GAAAGAAGTAGA-TAG-CAGAGGA  1044

seq1  ATTTTGAAGAAAAATGAGGTTGGAGGACTTAGAGGACCTGATTTTAAGTC  1100
        |||||   ||||||||  ||   ||| |||||   |||||||  ||||
seq2  --TTTGA--GAAAATGAG--TG--AGAC-TAGAG--ACTGATTT--AGTC  1081

seq1  TTATATGATACAGAGTCACCATCAGTAACACACCCTGAAAAAAGGAACAG  1150
      ||| ||||||| |||||| ||||||| |||||||||| ||||||||||||
seq2  TTA-ATGATAC-GAGTCA-CATCAGT-ACACACCCTG-AAAAAGGAACAG  1126

seq1  GCAGACGGATCAATAGAAA  1169
         ||| ||||||||||||
seq2  --CGAC-GATCAATAGAAA  1142

seq1: chr13_64725351_64726522
seq2: B6Ng01-074K06.g_68_1223 (reverse)

seq1  CATGGTTGGCAGTTCTTTTTTTTTCTTATTTAGTTTTTATTCATAATCAT  50
      ||||||| |||||||||||||     |||||||||||   ||||||||  
seq2  CATGGTT-GCAGTTCTTTTTT----CTATTTAGTTTT--ATCATAATC--  41

seq1  AAACTTAACTTTGCAATCCAGCTAGACTTGAAGGGGAATGAGGAAAATAT  100
      ||||||||| |||| |||||||||||||   ||||||| |||||||||||
seq2  AAACTTAACCTTGCCATCCAGCTAGACT--GAGGGGAA-GAGGAAAATAT  88

seq1  GGAACCCAAAGAACTTCAGTGA-GAGCAGAGATTACAGGACA-TTGCGAG  148
       |||||| |||||||||||||| ||||||||| ||||||||| ||| |||
seq2  -GAACCCCAAGAACTTCAGTGAGGAGCAGAGA-TACAGGACATTTGGGAG  136

seq1  CAGATGGGGT-GGGGTGCTCTCCTGAGCTACAGAAGGAATGGTTTGATGG  197
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CAGATGGGGTGGGGGTGCTCTCCTGAGCTACAGAAGGAAT-GTTTGATGG  185

seq1  GTAAAACGTCCGCAAGTCAAAAGAAATTAGAGTTGTCCACAGTTGGAAAT  247
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GT-AAACGTCCGCAAGTCAAAA-AAATTAGAGTTGTCCACAGTTGGAAAT  233

seq1  AGTGGTCTTCTTGCTGGTCTTGCCATTCCTGGACCCAAAACGCTCCATGG  297
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCT--CTGCTGGTCTTGCCATTCCTGGACCCAAAACGCTCCATGG  281

seq1  CTTCCACAATGTTCATGCCTTCTTTCTCCTTCCCAAAGACCACATGCTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAATGTTCATGCCTTCTTTCTCCTTCCCAAAGACCACATGCTTG  331

seq1  CCATCCAGCCATTCAGTCTTGGCAGTGCAGATAAAAAACTGGGAACCGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGCCATTCAGTCTTGGCAGTGCAGATAAAAAACTGGGAACCGTT  381

seq1  TGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCT  431

seq1  TCAGGATGAAGTTCTCATTCTCAAATTTTTCTCCATAGATGGACCTGCCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGAAGTTCTCATTCTCAAATTTTTCTCCATAGATGGACCTGCCG  481

seq1  CCAGTGCCATTATGGCATGTAAAGTCACCACCCTGACACATGAATCCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCATTATGGCATGTAAAGTCACCACCCTGACACATGAATCCTGG  531

seq1  AATAATTCTGTGAAAGGAGGAAGCCTTATAGCCAAATCCTTTCTCTCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTGTGAAAGGAGGAAGCCTTATAGCCAAATCCTTTCTCTCCAG  581

seq1  TGCTCAGGGCTTGAAAGTTTTTCTGCTGTCTTTGGAACTTTGTCTGCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGGGCTTGAAAGTTTTTCTGCTGTCTTTGGAACTTTGTCTGCAAA  631

seq1  CAGCTCGAAGGAGACGCGGCCCAAGAGCTTGTCATCAGCCGTGATGTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGAAGGAGACGCGGCCCAAGAGCTTGTCATCAGCCGTGATGTCAA  681

seq1  AGAACACGGTGGGGTTGACCATGGCTGCAGCAAGCGACGAAAAGCAACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACGGTGGGGTTGACCATGGCTGCAGCAAGCGACGAAAAGCAACAG  731

seq1  TGGTGTCTGCAAAGCCATGGTTGGCAGTTCTAAGGCTGCCATGTGCTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTGCAAAGCCATGGTTGGCAGTTCTAAGGCTGCCATGTGCTTGG  781

seq1  TCTGTGATGTACTTGAAATATCGTGTGTTCCCTTCGTGCAGCATTGCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGTACTTGAAATATCGTGTGTTCCCTTCGTGCAGCATTGCTTG  831

seq1  ACTAGCTTCATGCTGATTGTGCCCCATTGATAACTTCTTCTCACTCTGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTCATGCTGATTGTGCCCCATTGATAACTTCTTCTCACTCTGTC  881

seq1  CTATTTCCCCTTGCAAACAGTATACAGGATGTTGTACTTTTAATAAACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCCCTTGCAAACAGTATACAGGATGTTGTACTTTTAATAAACCT  931

seq1  GTTTGGCACAAAACATCTTGACTCCTCTCTCTCTCTGTCTCTCTCTCTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCACAAAACATCTTGACTCCTCTCTCTCTCTGTCTCTCTCTCTGT  981

seq1  CTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCACACACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCACACACA  1031

seq1  CACACACACACACAAATGATGTTTTAAAAATACCGTAAAGTTTCGGAATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAAATGATGTTTTAAAAATACCGTAAAGTTTCGGAATC  1081

seq1  ATATCTAAATTAGGAGGCTCCTTATCATGTTATGTATGTATTGAATTCCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAATTAGGAGGCTCCTTATCATGTTATGTATGTATTGAATTCCA  1131

seq1  TTCCTCCTTCAAAGATACAGAATTC  1172
      |||||||||||||||||||||||||
seq2  TTCCTCCTTCAAAGATACAGAATTC  1156