BAC Information

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BAC

Clone NameB6Ng01-075B19
Chromosome13 (Build37)
Map Location 20,690,362 - 20,879,093
singlet/doubletdoublet
Overlap geneElmo1, LOC100040226, LOC665381, LOC665386
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075B19.bB6Ng01-075B19.g
ACCDH891763DH891764
length1,159696
definitionDH891763|Mus musculus domesticus DNA, BAC clone: B6Ng01-075B19, 5' end.DH891764|Mus musculus domesticus DNA, BAC clone: B6Ng01-075B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,690,362 - 20,691,496)(20,878,399 - 20,879,093)
sequence
gaattcatggttgctgatatgtgggggggttttattgatttttttttaaa
gatgacatcaatttatggtaccactgctataactatcatcgtttcgatta
taaatttaaaggccttgagatagtgttgtggaaacagatgccaaactcaa
tgcaaaatgtgcttgcttgcttgcttgcttacttgcgtgattgttgcata
acttcactgaagcctgaatggagggctgagggagaaagtgaataagaaat
ggagagaggagtttatgcaggcaagcatccatgactcagcatcctttcct
tccagggtttctatttctggtggagtaaggggcccctttgagtgtgagat
acatgactgtctaggttttgtgcaaagctgccccctcctagagagaggac
aactggaggtgaaccagacagagaaccccatgagagcccaagtatcttga
tggtaggctgtgttccgagtggctccagacaacacacggtctttgggatt
tattttggaagaattctttaattcatctgaactcttcattctgaggcatt
gtgatatgagtcacttgccaaaggcaaatgctctcatagatagtgaatag
gaaatgatccagagaggtctggctttctttgcggtcagcttctcaaaagt
gctactcccagatcctaacagggcagaggctgagatcagaggcacctaac
agagttgaagggacatgtgttagagcacacattatcacagtcagaatgct
gctattaaaaacacttggttctttccctccagatcaagagccaacagggt
tctgatgtgggctattggctattaccttccagtcaggagccagcggggtt
ctgatgtgggctattggctattaccttccagtcaaggagccagtggggtt
tctgatgtgggctatcggctattacctttccaggagatccattcttgctg
acttctccaaccagtaggtggattatggttccccaatatgagtacagcaa
caaactctgagccattgttttattggccttatgtattagaacatggccct
aggttgtgtcagtcaaatttatccagcacacattgtcaagtgaaagtggt
tcctttagccacttggcaactgtagggtccgggctcatcggtcttgcacc
ccagtaaat
gaattccagaggctgttccaggtctgtgcagagagaaaacaggaagccag
agtgcagtgcctcaggatggtaaagtccaaagtttcatcatttcctcatg
gtctgttacactatttctatcaagacagcaaagttcatttccttgaagac
ttgtgcctggccagcccagggagggtgaaaggcagccttgctgagctcag
gttctatgaattcaagctacttgtggggtcaaaagggggcatgccctctg
atccctagtcaggagaaagaagaaagggtggccttggtgtgcgcacctgc
agcagcaggtcctcttcagcatacagatgtgtttactgcacttgttcttg
gttgacatcagagtcacatgtggagaggaaagagtggctgactgagaccc
gggttactgaggggcaccctgttggaaggaatggagtcgatctgagagga
cctgggcttttcttttccacccactccccaaagagaacttaaaaaagaga
ctctctgagcgcatgcctttaatcccaacactagggaggcagaggcaggt
ggatttctgagttcgaggccagcctggtttacaaagtgagttccaggaca
gccagagaaaccttgtcttgaaaaatcagaagagagagagagagagagag
agagagagagagagagagagagagagggagagaaaagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20690362_20691496
seq2: B6Ng01-075B19.b_45_1203

seq1  GAATTCATGGTTGCTGATATGTGGGGGGGTTTTATTGATTTTTTTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTTGCTGATATGTGGGGGGGTTTTATTGATTTTTTTTTAAA  50

seq1  GATGACATCAATTTATGGTACCACTGCTATAACTATCATCGTTTCGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATCAATTTATGGTACCACTGCTATAACTATCATCGTTTCGATTA  100

seq1  TAAATTTAAAGGCCTTGAGATAGTGTTGTGGAAACAGATGCCAAACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAAGGCCTTGAGATAGTGTTGTGGAAACAGATGCCAAACTCAA  150

seq1  TGCAAAATGTGCTTGCTTGCTTGCTTGCTTACTTGCGTGATTGTTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGTGCTTGCTTGCTTGCTTGCTTACTTGCGTGATTGTTGCATA  200

seq1  ACTTCACTGAAGCCTGAATGGAGGGCTGAGGGAGAAAGTGAATAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGAAGCCTGAATGGAGGGCTGAGGGAGAAAGTGAATAAGAAAT  250

seq1  GGAGAGAGGAGTTTATGCAGGCAAGCATCCATGACTCAGCATCCTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGGAGTTTATGCAGGCAAGCATCCATGACTCAGCATCCTTTCCT  300

seq1  TCCAGGGTTTCTATTTCTGGTGGAGTAAGGGGCCCCTTTGAGTGTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTTTCTATTTCTGGTGGAGTAAGGGGCCCCTTTGAGTGTGAGAT  350

seq1  ACATGACTGTCTAGGTTTTGTGCAAAGCTGCCCCCTCCTAGAGAGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTGTCTAGGTTTTGTGCAAAGCTGCCCCCTCCTAGAGAGAGGAC  400

seq1  AACTGGAGGTGAACCAGACAGAGAACCCCATGAGAGCCCAAGTATCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGGTGAACCAGACAGAGAACCCCATGAGAGCCCAAGTATCTTGA  450

seq1  TGGTAGGCTGTGTTCCGAGTGGCTCCAGACAACACACGGTCTTTGGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCTGTGTTCCGAGTGGCTCCAGACAACACACGGTCTTTGGGATT  500

seq1  TATTTTGGAAGAATTCTTTAATTCATCTGAACTCTTCATTCTGAGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGAAGAATTCTTTAATTCATCTGAACTCTTCATTCTGAGGCATT  550

seq1  GTGATATGAGTCACTTGCCAAAGGCAAATGCTCTCATAGATAGTGAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATGAGTCACTTGCCAAAGGCAAATGCTCTCATAGATAGTGAATAG  600

seq1  GAAATGATCCAGAGAGGTCTGGCTTTCTTTGCGGTCAGCTTCTCAAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATCCAGAGAGGTCTGGCTTTCTTTGCGGTCAGCTTCTCAAAAGT  650

seq1  GCTACTCCCAGATCCTAACAGGGCAGAGGCTGAGATCAGAGGCACCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCCCAGATCCTAACAGGGCAGAGGCTGAGATCAGAGGCACCTAAC  700

seq1  AGAGTTGAAGGGACATGTGTTAGAGCACACATTATCACAGTCAGAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAAGGGACATGTGTTAGAGCACACATTATCACAGTCAGAATGCT  750

seq1  GCTATT-AAAACACTTGGTTC-TTCCCTCCAGATCAAGAGCCAACAGGGT  798
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTATTAAAAACACTTGGTTCTTTCCCTCCAGATCAAGAGCCAACAGGGT  800

seq1  TCTGATGTGGGCTATTGGCTATTACCTTCCAGTCAGGAGCCAGCGGGGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGGGCTATTGGCTATTACCTTCCAGTCAGGAGCCAGCGGGGTT  850

seq1  CTGATGTGGGCTATTGGCTATTACCTTCCAGTC-AGGAGCCAGTGGGG-T  896
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  CTGATGTGGGCTATTGGCTATTACCTTCCAGTCAAGGAGCCAGTGGGGTT  900

seq1  TCTGATGTGGGCTATCGGCTATTACC-TTCCAGGAGATCCATTC-TGCTG  944
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TCTGATGTGGGCTATCGGCTATTACCTTTCCAGGAGATCCATTCTTGCTG  950

seq1  ACTTCTCCAACCAGTAGGGTGATTATGGTTCCCCAATATGAGTACAGC-A  993
      ||||||||||||||||||  |||||||||||||||||||||||||||| |
seq2  ACTTCTCCAACCAGTAGGTGGATTATGGTTCCCCAATATGAGTACAGCAA  1000

seq1  CAAACTCTGAG-CAGTGTTTTA-TGGCC-TATGTATTAG-ACATGGCCCT  1039
      ||||||||||| || ||||||| ||||| |||||||||| ||||||||||
seq2  CAAACTCTGAGCCATTGTTTTATTGGCCTTATGTATTAGAACATGGCCCT  1050

seq1  AGG-TGTGTCAGCCAAATTTATCCAGC-CACA--GTGCAGTGAAAGTG--  1083
      ||| |||||||| |||||||||||||| ||||  ||  ||||||||||  
seq2  AGGTTGTGTCAGTCAAATTTATCCAGCACACATTGTCAAGTGAAAGTGGT  1100

seq1  TCCTTTAGCC-CTTGGC-ACTGTA-GGTCC-GGCTCATC-GTC-TGCA-C  1126
      |||||||||| |||||| |||||| ||||| |||||||| ||| |||| |
seq2  TCCTTTAGCCACTTGGCAACTGTAGGGTCCGGGCTCATCGGTCTTGCACC  1150

seq1  TCAGTAAAT  1135
       ||||||||
seq2  CCAGTAAAT  1159

seq1: chr13_20878399_20879093
seq2: B6Ng01-075B19.g_69_764 (reverse)

seq1  TCTCTCTCTC-TTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTTCTGATTTTTCAAGACAAGGTTTCTCTGGCTGTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTTCTGATTTTTCAAGACAAGGTTTCTCTGGCTGTC  100

seq1  CTGGAACTCACTTTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCACCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTTTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCACCT  150

seq1  GCCTCTGCCTCCCTAGTGTTGGGATTAAAGGCATGCGCTCAGAGAGTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCTAGTGTTGGGATTAAAGGCATGCGCTCAGAGAGTCTC  200

seq1  TTTTTTAAGTTCTCTTTGGGGAGTGGGTGGAAAAGAAAAGCCCAGGTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTTCTCTTTGGGGAGTGGGTGGAAAAGAAAAGCCCAGGTCCT  250

seq1  CTCAGATCGACTCCATTCCTTCCAACAGGGTGCCCCTCAGTAACCCGGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCGACTCCATTCCTTCCAACAGGGTGCCCCTCAGTAACCCGGGT  300

seq1  CTCAGTCAGCCACTCTTTCCTCTCCACATGTGACTCTGATGTCAACCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGCCACTCTTTCCTCTCCACATGTGACTCTGATGTCAACCAAG  350

seq1  AACAAGTGCAGTAAACACATCTGTATGCTGAAGAGGACCTGCTGCTGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGCAGTAAACACATCTGTATGCTGAAGAGGACCTGCTGCTGCAG  400

seq1  GTGCGCACACCAAGGCCACCCTTTCTTCTTTCTCCTGACTAGGGATCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCACACCAAGGCCACCCTTTCTTCTTTCTCCTGACTAGGGATCAGA  450

seq1  GGGCATGCCCCCTTTTGACCCCACAAGTAGCTTGAATTCATAGAACCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCCCCCTTTTGACCCCACAAGTAGCTTGAATTCATAGAACCTGA  500

seq1  GCTCAGCAAGGCTGCCTTTCACCCTCCCTGGGCTGGCCAGGCACAAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAAGGCTGCCTTTCACCCTCCCTGGGCTGGCCAGGCACAAGTCT  550

seq1  TCAAGGAAATGAACTTTGCTGTCTTGATAGAAATAGTGTAACAGACCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAATGAACTTTGCTGTCTTGATAGAAATAGTGTAACAGACCATG  600

seq1  AGGAAATGATGAAACTTTGGACTTTACCATCCTGAGGCACTGCACTCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGATGAAACTTTGGACTTTACCATCCTGAGGCACTGCACTCTGG  650

seq1  CTTCCTGTTTTCTCTCTGCACAGACCTGGAACAGCCTCTGGAATTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTTTCTCTCTGCACAGACCTGGAACAGCCTCTGGAATTC  696