BAC Information

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BAC

Clone NameB6Ng01-078A11
Chromosome13 (Build37)13 (Build37)
Map Location 68,454,832 - 68,456,01268,310,201 - 68,310,966
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneE130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245
Downstream geneEG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078A11.bB6Ng01-078A11.g
ACCDH893845DH893846
length1,162973
definitionDH893845|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A11, 5' end.DH893846|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,454,832 - 68,456,012)(68,310,201 - 68,310,966)
sequence
gaattcttttgtcaggggagactgcccacagttatcatcaattccacacc
atgacctgccatgctgctcagttcactccagccatggtcatgaattgcac
acagaatttccactctgtgctccatagattttgttttaatagatgtgtgt
gttgattgggatggacgctgctgccttgaagtgtgcttgctatgtatcct
gcctcattcagaagcatggagggtcagggagttcaggcctcggtggcact
ggaaacactgagaacaaaactacaaagacttcaggaattcattgaggtga
tcagggccgaccgagcagagtcgatgttggatggacttctctctgagaca
cagataaggtttttctttcattcttctaaaagcaagttgtgttgttggat
ccctgggaggaatgtgaaagacatcacttagcagattatccagggactga
ctagaaaaaccgtctcagagaaaatatatttctcctttatatcaccccaa
gttactcatctgtctttagtcttatttagttactaaattggaaaccacgc
atctattttctaagtctgtttctacacgttcagttcacaaaagaagtata
gtaaatatgaaggcaaaaccaaaataactcacagaacgattgatttcaaa
cagtgagccagagtctgtcagccatgttgtctaatggacttctgtctaga
tctgacccaagtcatgttgcagagaacgttctaagagagcctttgcctaa
accactctgaacatacataatctcagctgctctcagaagctacaaaggga
gggtcttcactggttagcatctcgatgagtatagttctgagggttatgaa
tgcttcagtcctccaatgtcacgctttcctcctctggaaaccagggacgg
atttttttgctcgaaatcataaaatttatctgagacctttaggcctcttc
cagacaacatgtgcttaagacttacagaaacacctcttcctttagatttt
gctgcccatgataaactactctttctaactgatcttcaatcagtcgtctg
cagcacggtcatgtacgagatcctatcctttactgaaaaaaataatatgg
agaaggaaaatgaagaaagaagaataagactatttccactctggttctgt
cgatggctccag
gaattcactgacataaatcaaaccatagtttccctgtgcatctcagagcc
ctcctccccgttgctcccatatgcgcgggtgggtcagcacagtgccctct
ctttctgccctaagaagcagtaagaagcagtaaggggcagtggcagtgag
gaccctgcctggaccagcacactttttggcctggtgatgagaaggcatgg
ggctccttctccagctgctcccactttcctggcaaagtgcagccctaagc
ctgaacagaactgaaaccataggctccgcctgaaacagagcctcctctta
aacccacaggtccccccaagatctattctgaaattgaagggcctcctgag
tggccagagtcccctcccactctgccctattttctgcctccacaggtcct
tgctcctgggtttgggattgctggtggcagttggtggatcaaggactgat
ggctgggacccagagccaacaaacccagagtcccccagcagatagagctc
ctgacaccacttcttccttttcctttgagagctctaggtgacctgcccac
agaccctcagtctctacagaccctccaatattagtcttttgtaatcagct
gatctgtataattggaacgctgggttccctctggactggccagattagaa
ctacaagatggctcaaggtagggagaggttgccaggttaccggctgtgct
ctagtctaaagggagctatgagatgccacaccaattttcctcaggtgaga
gaagtaatgcaggaccctacagagcccctctctgtttttctagaaagatt
gatagaagcttatagatactatactccttttaacccgacctctgagggtc
aacaagccgcggttgctatggcttttaaagattacatgccatggctttac
aagatttagtcaggagatagaaaagatgtatcacagagagggagaataag
aggaaagagacaggagaggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68454832_68456012
seq2: B6Ng01-078A11.b_46_1207

seq1  GAATTCTTTTGTCAGGGGAGACTGCCCACAGTTATCATCAATTCCACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTCAGGGGAGACTGCCCACAGTTATCATCAATTCCACACC  50

seq1  ATGACCTGCCATGCTGCTCAGTTCACTCCAGCCATGGTCATGAATTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGCCATGCTGCTCAGTTCACTCCAGCCATGGTCATGAATTGCAC  100

seq1  ACAGAATTTCCACTCTGTGCTCCATAGATTTTGTTTTAATAGATGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTCCACTCTGTGCTCCATAGATTTTGTTTTAATAGATGTGTGT  150

seq1  GTTGATTGGGATGGACGCTGCTGCCTTGAAGTGTGCTTGCTATGTATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGGGATGGACGCTGCTGCCTTGAAGTGTGCTTGCTATGTATCCT  200

seq1  GCCTCATTCAGAAGCATGGAGGGTCAGGGAGTTCAGGCCTCGGTGGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTCAGAAGCATGGAGGGTCAGGGAGTTCAGGCCTCGGTGGCACT  250

seq1  GGAAACACTGAGAACAAAACTACAAAGACTTCAGGAATTCATTGAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACTGAGAACAAAACTACAAAGACTTCAGGAATTCATTGAGGTGA  300

seq1  TCAGGGCCGACCGAGCAGAGTCGATGTTGGATGGACTTCTCTCTGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCGACCGAGCAGAGTCGATGTTGGATGGACTTCTCTCTGAGACA  350

seq1  CAGATAAGGTTTTTCTTTCATTCTTCTAAAAGCAAGTTGTGTTGTTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGGTTTTTCTTTCATTCTTCTAAAAGCAAGTTGTGTTGTTGGAT  400

seq1  CCCTGGGAGGAATGTGAAAGACATCACTTAGCAGATTATCCAGGGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAGGAATGTGAAAGACATCACTTAGCAGATTATCCAGGGACTGA  450

seq1  CTAGAAAAACCGTCTCAGAGAAAATATATTTCTCCTTTATATCACCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAACCGTCTCAGAGAAAATATATTTCTCCTTTATATCACCCCAA  500

seq1  GTTACTCATCTGTCTTTAGTCTTATTTAGTTACTAAATTGGAAACCACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCATCTGTCTTTAGTCTTATTTAGTTACTAAATTGGAAACCACGC  550

seq1  ATCTATTTTCTAAGTCTGTTTCTACACGTTCAGTTCACAAAAGAAGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTCTAAGTCTGTTTCTACACGTTCAGTTCACAAAAGAAGTATA  600

seq1  GTAAATATGAAGGCAAAACCAAAATAACTCACAGAACGATTGATTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATGAAGGCAAAACCAAAATAACTCACAGAACGATTGATTTCAAA  650

seq1  CAGTGAGCCAGAGTCTGTCAGCCATGTTGTCTAATGGACTTCTGTCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCCAGAGTCTGTCAGCCATGTTGTCTAATGGACTTCTGTCTAGA  700

seq1  TCTGACCCAAGTCATGTTGCAGAGAACGTTCTAAGAGAGCCTTTGCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCAAGTCATGTTGCAGAGAACGTTCTAAGAGAGCCTTTGCCTAA  750

seq1  ACCACTCTGAACATACATAATCTCAGCTGCTCTCAGAAGCTACAAAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTGAACATACATAATCTCAGCTGCTCTCAGAAGCTACAAAGGGA  800

seq1  GGGTCTTCACTGGTTAGCATCTCGATGAGTATAGTTCTGAGGGTTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCACTGGTTAGCATCTCGATGAGTATAGTTCTGAGGGTTATGAA  850

seq1  TGCTTCAGTCCTCCAATGTCACGCTTCCCTCCTCTGGAAACCAGGGACGG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCTTCAGTCCTCCAATGTCACGCTTTCCTCCTCTGGAAACCAGGGACGG  900

seq1  ATTTTTTTGCTCGAAATCATAAAATTTATCTGAGACCTTTAGGCCTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGCTCGAAATCATAAAATTTATCTGAGACCTTTAGGCCTCTTC  950

seq1  CAGACAACATGTGCTTAAAGACCTACAGAAACAACCTCTTCCCTTTAGAT  1000
      |||||||||||||||| ||||| ||||||||| ||||||| |||||||||
seq2  CAGACAACATGTGCTT-AAGACTTACAGAAAC-ACCTCTT-CCTTTAGAT  997

seq1  TTTGGCTGCCCCATGATAAAACTTACTCCTTTCTTAACTGATCTACAAAT  1050
      ||| |||| |||||||||||   |||| ||||| |||||||||| | |||
seq2  TTT-GCTG-CCCATGATAAA--CTACT-CTTTC-TAACTGATCTTC-AAT  1040

seq1  CAGGTCGTCTGCAGCACGGTCATGACCGAGATCCTATCTTTACCTGAGAA  1100
      || |||||||||||||||||||||  |||||||||||| ||  |||| ||
seq2  CA-GTCGTCTGCAGCACGGTCATGTACGAGATCCTATCCTTTACTGAAAA  1089

seq1  AATAAATAT-GAGAAGGAAAAATGAAAGAAAAAGAAGAAATAAAGACTA-  1148
      ||  ||||| ||||||| |||||||   | |||||||||   ||||||| 
seq2  AAATAATATGGAGAAGG-AAAATGA---AGAAAGAAGAA--TAAGACTAT  1133

seq1  ATCCACTCTGGTGTCCCTGTTCGATGGCGCCAG  1181
       |||||||||||    ||| |||||||| ||||
seq2  TTCCACTCTGGT---TCTG-TCGATGGCTCCAG  1162

seq1: chr13_68310201_68310966
seq2: B6Ng01-078A11.g_69_834

seq1  GAATTCACTGCCATAAATCAAATTATAGTTTCCCTGTGCATCTCAGAGCC  50
      |||||||||| |||||||||||  ||||||||||||||||||||||||||
seq2  GAATTCACTGACATAAATCAAACCATAGTTTCCCTGTGCATCTCAGAGCC  50

seq1  CTCCTCCACGCTGCTCCCATGTGTGCGGGTGGGTCAGCACTGTGCCCTCT  100
      ||||||| || ||||||||| || |||||||||||||||| |||||||||
seq2  CTCCTCCCCGTTGCTCCCATATGCGCGGGTGGGTCAGCACAGTGCCCTCT  100

seq1  CTTTCTGCCCTAAGAAGCAGTAAGAAGCAGTAAGGGGCAGTGGCAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCCTAAGAAGCAGTAAGAAGCAGTAAGGGGCAGTGGCAGTGAG  150

seq1  GACCCTGCCTGAACCAGCACACTTTTTGGCCTGGTGATGAGAAGGCATGG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGCCTGGACCAGCACACTTTTTGGCCTGGTGATGAGAAGGCATGG  200

seq1  GGCTCCTTCTCCAGCTGCTCCCACTCCGCTGGCAAACTGCAGCCCTGAGC  250
      |||||||||||||||||||||||||   |||||||| ||||||||| |||
seq2  GGCTCCTTCTCCAGCTGCTCCCACTTTCCTGGCAAAGTGCAGCCCTAAGC  250

seq1  CTGAACAGAACTGAAACCATAGGCTCCACCTGAAACAGAGCCTCCTCTTC  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CTGAACAGAACTGAAACCATAGGCTCCGCCTGAAACAGAGCCTCCTCTTA  300

seq1  AACCCACAGGTCCCCCCAAGATCTATTCTGAAATTGAAGGGCCTCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAGGTCCCCCCAAGATCTATTCTGAAATTGAAGGGCCTCCTGAG  350

seq1  TGGCCAGAGTCCCCTCCCACTCTGTCCTATTTTCTGCCTCCATAGGTCCT  400
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TGGCCAGAGTCCCCTCCCACTCTGCCCTATTTTCTGCCTCCACAGGTCCT  400

seq1  TGCTCCTGGCTCTGGGATTGCTGGTGGCAGTTGGTGGATCAAGGACTGAT  450
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGGGTTTGGGATTGCTGGTGGCAGTTGGTGGATCAAGGACTGAT  450

seq1  GGCTGGGACCCAGAGCCAACAAACCCAGAGTCCCCCAGCAGATGGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCTGGGACCCAGAGCCAACAAACCCAGAGTCCCCCAGCAGATAGAGCTC  500

seq1  CTGACACCACTTCTGCCTTTTCCTTTGAGAGCACTAGGTGACCTGCCCAC  550
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CTGACACCACTTCTTCCTTTTCCTTTGAGAGCTCTAGGTGACCTGCCCAC  550

seq1  AGACCCTCAGTCTCTGCAGACCCTCCAATATTAGTCTTTTGTCATCAGCT  600
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AGACCCTCAGTCTCTACAGACCCTCCAATATTAGTCTTTTGTAATCAGCT  600

seq1  GATCTGTATAATTGGAACGCTGGGTTCCCTCTGGACTGGGCAGATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATCTGTATAATTGGAACGCTGGGTTCCCTCTGGACTGGCCAGATTAGAA  650

seq1  CTACAAGATGGCTCAAGGTAGGGAGAGGTTGTCAGGTTACCAGCTGGGCT  700
      ||||||||||||||||||||||||||||||| ||||||||| |||| |||
seq2  CTACAAGATGGCTCAAGGTAGGGAGAGGTTGCCAGGTTACCGGCTGTGCT  700

seq1  CTCTTCTAAAGGGAGCTATGAGCCGCCACACCAATTTGCCTCAGGTAAGA  750
      ||  ||||||||||||||||||  ||||||||||||| |||||||| |||
seq2  CTAGTCTAAAGGGAGCTATGAGATGCCACACCAATTTTCCTCAGGTGAGA  750

seq1  GAAGTAATGCAGGGCC  766
      ||||||||||||| ||
seq2  GAAGTAATGCAGGACC  766