BAC Information

Click to search

BAC

Clone NameB6Ng01-078F09
Chromosome13 (Build37)13 (Build37)
Map Location 12,902,996 - 12,903,88813,179,135 - 13,179,839
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream geneLOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F09.bB6Ng01-078F09.g
ACCDH894060DH894061
length1,133990
definitionDH894060|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F09, 5' end.DH894061|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,902,996 - 12,903,888)(13,179,135 - 13,179,839)
sequence
gaattctatatattgaatcatccctgcatacctgggatgaagcctacttg
atattggtgaatggttgttttgatgtgttcttgtatttggtttgtaagaa
ttttattattgattattattattattttattatcaattgatctgaagttc
tcttcctctgttgggtctttgtgtggtttatgtatgagcataatttgggt
gccatagaatgaattgggtagttttccttcagtttctattttgtggaaca
attaagagtatttgtattaggtcttctttaaaggtctggtagaattctgc
actacaaccatcttgtcttggacttttttgttgtcgttgctgggagtctc
ttaatgtctgcttctattctttacgggttgtggaatgttttatatggttt
atctgatcttgatttaactttggtacctggtatctgtctagtaaattgtc
tatttcatccagattttccagttttgttgagtatgggcttttgtagtaga
atcagataattatttaaattttcttcatttccattgttatgtctcccttc
tcatttctgctattattaatttagatactgtttcggtgctctctggttag
tctggctttgggtttatctatcttgttgatttttctcaaagaaccactcc
tggttttgttgattctttgtaaagatctttttgtttctacttggttgatt
tcagccctgagtttgattatttcctgctgtctattcctcttgggtgtata
atgcattcattagacataaaaaattggaaggtcaataattccaatacaac
aatgttggaacatcatttattccccagttattatggcaatagatctagcg
tcacaaatctggcacgtgagcagttattaagcaccatatatctcacactc
tgtatctgtactagaagtggaaaaagcctcagtatctagtcattttatgc
ataggaatgcaccactgagattcactactactctctatacatatttatga
ctttatataaattataaatggaaacatgcattgaagaggaattaaatttg
ataattttttccttcctttagtatttttttctgggaaaagtcaatgtttt
ctctaacaattgcttcttaacaattgggaaata
gaattctgttctgacctttggactttgggacttttttttccagttgagag
atatttaattatttaaaaattaagtaattaaatatttctttttcacttaa
tgttatattttcaattattaacttcaactggatttggattttaataggtt
gtgcatatggaaaattttatctatgcttgtttttattttctttggttttt
gttttaatttcagtatattttaaccttagtttcctcaccctccactcgcc
acagcaactcctccactctcccaaaggccctctcctcttccatctatctt
tagaaaaaaaaagcaggcacttgaagggtttcagccaaacatggcataaa
aagttacaacaagacatgatataaaccctcacatcaaggcagggcaaggc
agcatagtaagaggaaaatgatccccagaggagacaatataacatcagat
acgctcacattcccactgttaagagtccaatagaaatacaaagctaataa
ccctaacatagagagagaatatctagagcaaacccatgcatactctgtga
tagttgcttcagtctctgtgagccactatgaacactgctacactggtttt
gttagctgttttctcctggtgttaatttggttagatataactttaaagta
tgtgtctataattctctgaatgtccttaatgcttgctttactctctcctt
ttcatctctaattttattaatttgcaatctcactaattttttggtcaaat
gtgctaatggttttttcaatgttattaaacttttcaaaacacctgagata
tatattatatatatagcaatcaacttgtttttgttccttttgttcgtttg
cttttactttttattggatattttctttatttatatttcaaattttatcc
tctttcccagtttcccccactcccgaaaataccctagcccattccgcttc
ccccgcttctatgaggtgttcctccaccatcaacactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12902996_12903888
seq2: B6Ng01-078F09.b_294_1178

seq1  CAATTAAGAGTATTTGTATTAGGTCTTCTTTAAAGGTCTGGTAGAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGAGTATTTGTATTAGGTCTTCTTTAAAGGTCTGGTAGAATTCT  50

seq1  GCACTACAACCATCTTGTCTTGGACTTTTTTGTTGTCGTTGTTGGGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCACTACAACCATCTTGTCTTGGACTTTTTTGTTGTCGTTGCTGGGAGTC  100

seq1  TCTTAATGTCTGCTTCTATTCTTTACGGGTTGTGGAATGTTTTATATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGTCTGCTTCTATTCTTTACGGGTTGTGGAATGTTTTATATGGT  150

seq1  TTATCTGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAGTAAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAGTAAATTG  200

seq1  TCTATTTCATCCAGATTTTCCAGTTTTGTTGAGTATGGGCTTTTGTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCATCCAGATTTTCCAGTTTTGTTGAGTATGGGCTTTTGTAGTA  250

seq1  GAATCAGATAATTATTTAAATTTTCTTCATTTCCATTGTTATGTCTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGATAATTATTTAAATTTTCTTCATTTCCATTGTTATGTCTCCCT  300

seq1  TCTCATTTCTGCTATTATTAATTTAGATACTGTTTCGGTGCTCTCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTGCTATTATTAATTTAGATACTGTTTCGGTGCTCTCTGGTT  350

seq1  AGTCTGGCTTTGGGTTTATCTATCTTGTTGATTTTTCTCAAAGAACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCTTTGGGTTTATCTATCTTGTTGATTTTTCTCAAAGAACCACT  400

seq1  CCTGGTTTTGTTGATTCTTTGTAAAGATCTTTTTGTTTCTACTTGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTTGTTGATTCTTTGTAAAGATCTTTTTGTTTCTACTTGGTTGA  450

seq1  TTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTATTCCTCTTGGGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTATTCCTCTTGGGTGTA  500

seq1  TAATGCATTCATTAGACATAAAAAATTGGAAGGTCAATAATTCCAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATTCATTAGACATAAAAAATTGGAAGGTCAATAATTCCAATACA  550

seq1  ACAATGTTGGAACATCATTTATTCCCCAGTTATTATGGCAATAGATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTGGAACATCATTTATTCCCCAGTTATTATGGCAATAGATCTAG  600

seq1  CGTCACAAATCTGGCAGGTGAGCAGTTATTAAGCACCATATATCTCACAC  650
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGTCACAAATCTGGCACGTGAGCAGTTATTAAGCACCATATATCTCACAC  650

seq1  TCTGTATCTGTACTAGAAGGTGGAAAAAGCCTCAGTATCTAGTCATTTTA  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGTATCTGTACTAGAA-GTGGAAAAAGCCTCAGTATCTAGTCATTTTA  699

seq1  TGCATAGGAATGCACCACTGAGATTCACTACTACTCTCTATAACATATTT  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCATAGGAATGCACCACTGAGATTCACTACTACTCTCTAT-ACATATTT  748

seq1  ATGACTCTATATAAATTATAAAATGGAAACATGCATTGAAGAGGGAATTA  800
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  ATGACTTTATATAAATTAT-AAATGGAAACATGCATTGAAGA-GGAATTA  796

seq1  AATTTGATAATATTTTCCTCCCTTTAGTATTTTTGTCTGGGAAAAAGTCA  850
      ||||||||||| ||||||| |||||||||||||| |||||| ||||||||
seq2  AATTTGATAATTTTTTCCTTCCTTTAGTATTTTTTTCTGGG-AAAAGTCA  845

seq1  ATGTTTTCTCTTAACAAATTGCTTCTTAAACCATTGGGGAATA  893
      |||||||||| |||| ||||||||||| ||| |||||| ||||
seq2  ATGTTTTCTC-TAAC-AATTGCTTCTT-AACAATTGGGAAATA  885

seq1: chr13_13179135_13179839
seq2: B6Ng01-078F09.g_70_776

seq1  GAATTCTGTCCTGACCTTTGGATTTTGGGACTTTTTTTTCCAGTTGAGAG  50
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGACCTTTGGACTTTGGGACTTTTTTTTCCAGTTGAGAG  50

seq1  GTATATAATTACTTAAAAATTAAGTAATTAAATATTTCTTTCTCGCTTAA  100
       ||| |||||| ||||||||||||||||||||||||||||| || |||||
seq2  ATATTTAATTATTTAAAAATTAAGTAATTAAATATTTCTTTTTCACTTAA  100

seq1  TGTTATATTTTCAATTATTAACTTCAACTGGATTTGGATTTTAATAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTTTCAATTATTAACTTCAACTGGATTTGGATTTTAATAGGTT  150

seq1  GTGCATATGGAAAATTTTATCTATGCTTGTTTTTATTTTCTTTGGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGCATATGGAAAATTTTATCTATGCTTGTTTTTATTTTCTTTGGTTTTT  200

seq1  GTTTTAATTTCAGTATATTCCAACCTTAGTTTCCTCACCCTCCACTCGCC  250
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GTTTTAATTTCAGTATATTTTAACCTTAGTTTCCTCACCCTCCACTCGCC  250

seq1  ACAGCAACCCCTTCACTCTCCCAAAGGCCCTCTCCTCTTCCATCTATCTT  300
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTCCTCCACTCTCCCAAAGGCCCTCTCCTCTTCCATCTATCTT  300

seq1  TAG-AAAAAAAAGCAGGCACTTGAAGGATATCAGTCAAACATGGCATAAA  349
      ||| ||||||||||||||||||||||| | |||| |||||||||||||||
seq2  TAGAAAAAAAAAGCAGGCACTTGAAGGGTTTCAGCCAAACATGGCATAAA  350

seq1  AAGTTACAACCAGACTAGATACAAACCCTCACATCAAGG-TGGGCAAGGC  398
      |||||||||| ||||  |||| |||||||||||||||||  |||||||||
seq2  AAGTTACAACAAGACATGATATAAACCCTCACATCAAGGCAGGGCAAGGC  400

seq1  AGCATAGTAAGAGGAAAATGATCCCCAGAGGAGACAATATAACATCAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTAAGAGGAAAATGATCCCCAGAGGAGACAATATAACATCAGAT  450

seq1  ATGCTCACATTCCTACTGTTAAGAGTCCAATAGAAATACAAAGCTAATAA  498
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACGCTCACATTCCCACTGTTAAGAGTCCAATAGAAATACAAAGCTAATAA  500

seq1  CCCTAACATAGAGAGAGAACATCTAGAGCAAACCCATGCATACTCTGTGA  548
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTAACATAGAGAGAGAATATCTAGAGCAAACCCATGCATACTCTGTGA  550

seq1  TAGTTGCCTCAGTCTCTGTGAGCCACTATAAACACTGCTACACTGGTTTT  598
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGTTGCTTCAGTCTCTGTGAGCCACTATGAACACTGCTACACTGGTTTT  600

seq1  GTTAGCTGTGTTCTCCTGGTTTTAATTTGGTTAGATATAACTTTAAAGTA  648
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GTTAGCTGTTTTCTCCTGGTGTTAATTTGGTTAGATATAACTTTAAAGTA  650

seq1  TGTGTCTATAATTCTCTGAATGTCCTTAATGCTTGCTTTACTATCTCCTT  698
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTCTATAATTCTCTGAATGTCCTTAATGCTTGCTTTACTCTCTCCTT  700

seq1  TTCATCT  705
      |||||||
seq2  TTCATCT  707