BAC Information

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BAC

Clone NameB6Ng01-078N08
Chromosome13 (Build37)
Map Location 38,412,381 - 38,524,762
singlet/doubletdoublet
Overlap geneBmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078N08.bB6Ng01-078N08.g
ACCDH894425DH894426
length1,021938
definitionDH894425|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N08, 5' end.DH894426|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,524,206 - 38,524,762)(38,412,381 - 38,413,328)
sequence
gaattcttcataggctccaagaggtccctgatcatacctgccctccacaa
gagtcttcaggatgaatttgaagtgtcagatgtggggcagggcaagcttc
tttcttgtgactggtcgtgtcaactgtctacacaccaaacatacattaga
ttcagcatacatcctgggggccagtgacaagtcaaatttctgggccccac
acccaacactctggcttagcagatcttgtgtaggctcccagaggctcact
tagaaggtcctcaggagaccctgacattgctgaattacagaccacgcttg
gacaatcaatgtatgcattaaaagactggagatggaacgtgaggaatccc
ggagtgtaccactctgtcaactataaccattaggagactactctatagga
caattgcccactggtttctgtttcttttctactatagtgcttttactaat
ttgtcgagagtttcatacatgcttacaatgtatttttggtcatattcacc
tctactcctacccctaactcctcctgcatctaccttccataccccaaact
gcatcccaattttatgaaattttgtttccttcaaataatccattgaatcc
gatttctactgtccttacatgcataggtgtggggccatccactgaaacac
cgctaatctaccaaaggcaccacccttaatagaaaccttagtagccatca
catatcaacagcagctcagctggagttggggaggggcactacgaacccct
tcctcctacatgctgtagtgttgactggcttcatcttgtatcttgtacag
gcggtctcagatgctatgagttcgtgagtgaaacagtcttgccatgtcca
gaacatactgctttgccccagtcttccctgacttctctctttcttaggat
cattttattgtcttttctgtgacaatctctaagcttgtggagaggaatat
gacataaatgtcccacattatgactgagcactccacagacacttctcttc
tgcatttgggccagttgtaat
gagttgaaagacctcaaccccagagagcgccttttctcccctgtgggtca
ttacgcaatgtgtctccttgcttacctttccggtcttccctgcacacaca
tgagcggggctgtcatttggcagatggagtctctgagttacgtcaacacc
ttcctcagagcccgctgcaggctcaggctgggagctttccttcttggatg
tttattttacgtaagtactgactgccttctcagacttttttttttttttt
aattgtgttgatatatttctcactcaaataaacccaaaataggatagggg
ttgatttaaatgtttgcaccttcccacgtgataatgacagtagctccgtc
aactggttctgtgtctgttttggcttttcccagtggctgttcctaaaatg
agtctacgagtttagaccttaccaaatggaaagcaggccccggcttcgac
agggaatctttttggttgtttattaacgttatacatatcctttgcacttt
taccttcattttttcccctgttatttccttatctattaaaatgttgaggg
taggacctaggtaagcaccctgctatgttgtattcttagctctctctctc
tttttattacttactgcttaaatttgagaaatgccccagctttcccatac
aggggcaaatggaaggaggatacagaaaaaaattgttcacatgtatgaag
tatagttttgtgtgtgtgtgttttttttttaaatgtgtgtgggtgttttg
cctgtatgcatgtctgggcaacacaagcacacagtatctgtggataccag
agaagatatcagatcctctgggagtagacttttgtgagttgctatagggt
gctgggaattgaaccagggcctctggagacagtaatgctccattgagctc
tttctcttgaggagcaggaatcaagtcatcttggctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38524206_38524762
seq2: B6Ng01-078N08.b_48_604 (reverse)

seq1  GGGATGCAGTTTGGGGTATGGAAGGTAGATGCAGGAGGAGTTAGGGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCAGTTTGGGGTATGGAAGGTAGATGCAGGAGGAGTTAGGGGTAG  50

seq1  GAGTAGAGGTGAATATGACCAAAAATACATTGTAAGCATGTATGAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGGTGAATATGACCAAAAATACATTGTAAGCATGTATGAAACTC  100

seq1  TCGACAAATTAGTAAAAGCACTATAGTAGAAAAGAAACAGAAACCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAATTAGTAAAAGCACTATAGTAGAAAAGAAACAGAAACCAGTGG  150

seq1  GCAATTGTCCTATAGAGTAGTCTCCTAATGGTTATAGTTGACAGAGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGTCCTATAGAGTAGTCTCCTAATGGTTATAGTTGACAGAGTGGT  200

seq1  ACACTCCGGGATTCCTCACGTTCCATCTCCAGTCTTTTAATGCATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCGGGATTCCTCACGTTCCATCTCCAGTCTTTTAATGCATACATT  250

seq1  GATTGTCCAAGCGTGGTCTGTAATTCAGCAATGTCAGGGTCTCCTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCCAAGCGTGGTCTGTAATTCAGCAATGTCAGGGTCTCCTGAGGA  300

seq1  CCTTCTAAGTGAGCCTCTGGGAGCCTACACAAGATCTGCTAAGCCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAGTGAGCCTCTGGGAGCCTACACAAGATCTGCTAAGCCAGAGT  350

seq1  GTTGGGTGTGGGGCCCAGAAATTTGACTTGTCACTGGCCCCCAGGATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGTGGGGCCCAGAAATTTGACTTGTCACTGGCCCCCAGGATGTA  400

seq1  TGCTGAATCTAATGTATGTTTGGTGTGTAGACAGTTGACACGACCAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATCTAATGTATGTTTGGTGTGTAGACAGTTGACACGACCAGTCA  450

seq1  CAAGAAAGAAGCTTGCCCTGCCCCACATCTGACACTTCAAATTCATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAGCTTGCCCTGCCCCACATCTGACACTTCAAATTCATCCTG  500

seq1  AAGACTCTTGTGGAGGGCAGGTATGATCAGGGACCTCTTGGAGCCTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTTGTGGAGGGCAGGTATGATCAGGGACCTCTTGGAGCCTATGA  550

seq1  AGAATTC  557
      |||||||
seq2  AGAATTC  557

seq1: chr13_38412381_38413328
seq2: B6Ng01-078N08.g_77_1014

seq1  GAGTTGAAAGACCTCAACCCCAGAGAGCGCCTTTTCTCCCCTGTGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAAGACCTCAACCCCAGAGAGCGCCTTTTCTCCCCTGTGGGTCA  50

seq1  TTACGCAATGTGTCTCCTTGCTTACCTTTCCGGTCTTCCCTGCACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCAATGTGTCTCCTTGCTTACCTTTCCGGTCTTCCCTGCACACACA  100

seq1  TGAGCGGGGCTGTCATTTGGCAGATGGAGTCTCTGAGTTACGTCAACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGGGGCTGTCATTTGGCAGATGGAGTCTCTGAGTTACGTCAACACC  150

seq1  TTCCTCAGAGCCCGCTGCAGGCTCAGGCTGGGAGCTTTCCTTCTTGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGAGCCCGCTGCAGGCTCAGGCTGGGAGCTTTCCTTCTTGGATG  200

seq1  TTTATTTTACGTAAGTACTGACTGCCTTCTCAGACTTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACGTAAGTACTGACTGCCTTCTCAGACTTTTTTTTTTTTTTT  250

seq1  AATTGTGTTGATATATTTCTCACTCAAATAAACCCAAAATAGGATAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTTGATATATTTCTCACTCAAATAAACCCAAAATAGGATAGGGG  300

seq1  TTGATTTAAATGTTTGCACCTTCCCACGTGATAATGACAGTAGCTCCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAAATGTTTGCACCTTCCCACGTGATAATGACAGTAGCTCCGTC  350

seq1  AACTGGTTCTGTGTCTGTTTTGGCTTTTCCCAGTGGCTGTTCCTAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTCTGTGTCTGTTTTGGCTTTTCCCAGTGGCTGTTCCTAAAATG  400

seq1  AGTCTACGAGTTTAGACCTTACCAAATGGAAAGCAGGCCCCGGCTTCGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACGAGTTTAGACCTTACCAAATGGAAAGCAGGCCCCGGCTTCGAC  450

seq1  AGGGAATCTTTTTGGTTGTTTATTAACGTTATACATATCCTTTGCACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTTTTTGGTTGTTTATTAACGTTATACATATCCTTTGCACTTT  500

seq1  TACCTTCATTTTTTCCCCTGTTATTTCCTTATCTATTAAAATGTTGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCATTTTTTCCCCTGTTATTTCCTTATCTATTAAAATGTTGAGGG  550

seq1  TAGGACCTAGGTAAGCACCCTGCTATGTTGTATTCTTAGCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTAGGTAAGCACCCTGCTATGTTGTATTCTTAGCTCTCTCTCTC  600

seq1  TTTTTATTACTTACTGCTTAAATTTGAGAAATGCCCCAGCTTTCCCATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTACTTACTGCTTAAATTTGAGAAATGCCCCAGCTTTCCCATAC  650

seq1  AGGGGCAAATGGAAGGAGGATACAGAAAAAAATTGTTCACATGTATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAAATGGAAGGAGGATACAGAAAAAAATTGTTCACATGTATGAAG  700

seq1  TATAGTTTTGTGTGTGTGTGTTTTTTTTTTAAATGTGTGTGGGTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTGTGTGTGTGTGTTTTTTTTTTAAATGTGTGTGGGTGTTTTG  750

seq1  CCTGTATGCATGTCTGGGCAACACAAGCACACAGTATCTGTGGATACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGCATGTCTGGGCAACACAAGCACACAGTATCTGTGGATACCAG  800

seq1  AAGAGGATATCAGATCCTCTGGAAGTAGACATTTGTGAGTTGCCATATGG  850
       ||| ||||||||||||||||| ||||||| |||||||||||| ||| ||
seq2  -AGAAGATATCAGATCCTCTGGGAGTAGACTTTTGTGAGTTGCTATA-GG  848

seq1  GTGCTGGGAATTGAACCAGGGTCCTCTGGAAGAGCAGTAAGTGCTCCATT  900
      ||||||||||||||||||||| ||||||| ||| |||||| |||||||||
seq2  GTGCTGGGAATTGAACCAGGG-CCTCTGG-AGA-CAGTAA-TGCTCCATT  894

seq1  GAGCTCTCTCTCTTGGAGGAGCAGGAATCCAAGGCCATCCTTGGCTAC  948
      ||||||| |||||| ||||||||||||||  | | ||| |||||||||
seq2  GAGCTCTTTCTCTT-GAGGAGCAGGAATC--AAGTCAT-CTTGGCTAC  938