BAC Information

Click to search

BAC

Clone NameB6Ng01-079A08
Chromosome13 (Build37)13 (Build37)
Map Location 62,335,869 - 62,336,79662,734,031 - 62,735,141
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455
Downstream geneLOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079A08.bB6Ng01-079A08.g
ACCDH894559DH894560
length9951,094
definitionDH894559|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A08, 5' end.DH894560|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,335,869 - 62,336,796)(62,734,031 - 62,735,141)
sequence
gaattcctccacttttcttcaagtctgggaacaaccttttatagaaaaag
aatacgtaaaactgggccatataatcaatattcataccttctcaggtgtc
tctgaccatgaaaaacaacccataatgaaggggaacagcatgaatgtaag
caaagtgataaaaagtctgatgcctctttatatctatatctaaacagaga
gtaacattaaatgctagagatgaaagtattctgggacttcagagatggct
cagcagttaagagcaccaactgtctttgtgagggtcctgagttcaaatct
cagcaaccacatggtagcacacaaacatccctaatgagatctgactccct
cttctggagtgtcagaagacaggacagctatagtgtacttacatataata
agtaaacaaacaaacaaacaaacaaacagaaaaacaagaagaaagtattc
atccgtgtggtaaagctctcacatgtgccatttctcttctcaggtgtgaa
aggagtcagagtgcagagaaaccctctgaatatactcaacatggtaaagc
atttgctttccatgctcacagtcatgcccaaaggcatgaaaggattcata
cagaaaagatcccctctgaagttattcactgcatcgaagactttttacct
tacacaagtctccaagtacataaaagagcacaaactggccagaaacagta
tgaatataaacaatgtggtaaaggatttgcatgtcccagtcttcttaaaa
ggcatgaaagaattcatactgtcgagaaaccctacaaatgtaatcagtgt
gataaagccttttcccttaaatatagtctccaaagacatataaaggacac
atactggagaaaaacccttcaaatgtaatcagtgtgaaaaagccttttca
catcattgtaatcttcaaactcatagaagaacacataccagaaagaaacc
cttcaaatgtaatgaatgtgacaaagcctttcccaatttggtaat
gaattccagttttttgaggtataatttttaaatttattttatatgtattt
taattttattttgcatgcatgtgtttgagaacagaaggcaacagcaaata
cttcccaataatagttaataaccaggtagtttggggaatggaacctctgt
ctactgtaacaatatccagtttatgttaactgctaggctgtctgtctgac
aatgtgcttatttaaattgtacttttgtacatgttaagtaaaaatattgc
attattttcttcttcattttctattctttatccattcccaaaagtgttca
aatatcttctttgttaaggatgaaaaattcacaaatacatgaagaaaacc
tgctgtgtgcattcctttgactgtatttgttttttcaggtatgaataatt
tgcattgtatatgccatgaggaagctcatcccagcatgaggatttttttc
acttgtgggagaatctgctcctgaagtgacctaggatatcttgtgcaaaa
aaacatgaagaataaaacttacagtggtaaacatctcagataacacttaa
tgatgtcatgaccccgaacttctggagctgcagggaagactatggctact
gtcctgagacaatcacagaatgccttggctctctggaccttgcaacacac
cctgttgaccacttttaacttggatgactgtcaaatcctggtgtcgtcac
tctgtaagtaccatatatataggcatgtgcaaccatgcctggtttaggtg
gcttccacttcaattactaatgcattagagttacagcatgtgaaagatga
acagttccaattaagtatattcagaagcaaattaactgtgtgaccctcag
ttttaccatctgtagaataaaaatagaagtctacccttgagccaggtggt
gatggttgtgacccgtccagcagatccagttattcgagggtcttgaggga
ccttctcttagaaccaaatggggggtagagagagacgaggtttgtgcaat
acgacaaggaatgttctgaattgcatcagacctatgcattagtcaggtcc
aaggttaatgctagcaagggagtacgatacttatcagccgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62335869_62336796
seq2: B6Ng01-079A08.b_49_1027

seq1  GAATTGCTCCACTTTTCTTCAAGTACGGGAACAACATTTTATAGAAAAAG  50
      ||||| ||||||||||||||||||  ||||||||| ||||||||||||||
seq2  GAATTCCTCCACTTTTCTTCAAGTCTGGGAACAACCTTTTATAGAAAAAG  50

seq1  AATACCTAAAACTGAGCCATGTAATCAATGTTCATACCTTCTCAGGTGTC  100
      ||||| |||||||| ||||| |||||||| ||||||||||||||||||||
seq2  AATACGTAAAACTGGGCCATATAATCAATATTCATACCTTCTCAGGTGTC  100

seq1  TCTAACCATGAGAAACAACCCATAATGAAGGGGAACAGCATGAATGTAAG  150
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCATGAAAAACAACCCATAATGAAGGGGAACAGCATGAATGTAAG  150

seq1  GAAAGGGATAAAAGGTCTGATGCCTCTT------TACATTTAGACAAATA  194
       |||| ||||||| ||||||||||||||      || || || ||| | |
seq2  CAAAGTGATAAAAAGTCTGATGCCTCTTTATATCTATATCTAAACAGAGA  200

seq1  GTAACAGTAAATCCTAGAGATGAAAGTATTCTGGGACTTCAGAGATGGCT  244
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAACATTAAATGCTAGAGATGAAAGTATTCTGGGACTTCAGAGATGGCT  250

seq1  CAGCAGTTAAGAGCAC---------------------------CAAATCT  267
      ||||||||||||||||                           |||||||
seq2  CAGCAGTTAAGAGCACCAACTGTCTTTGTGAGGGTCCTGAGTTCAAATCT  300

seq1  CAGCAACCACACGGTGGCTCACAACCGTCCCTAGTGAGATCCGACTCCCT  317
      ||||||||||| ||| || ||||| | |||||| ||||||| ||||||||
seq2  CAGCAACCACATGGTAGCACACAAACATCCCTAATGAGATCTGACTCCCT  350

seq1  CTTCTGGAGTGTCAGAAGACAGGACAGCTACAGTGTACTTACATATAATA  367
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCTGGAGTGTCAGAAGACAGGACAGCTATAGTGTACTTACATATAATA  400

seq1  AGT--------AATCAAACTACCAAACAGAAAAACAAAAAGAAAGTATTC  409
      |||        || ||||| | ||||||||||||||| ||||||||||||
seq2  AGTAAACAAACAAACAAACAAACAAACAGAAAAACAAGAAGAAAGTATTC  450

seq1  ATCCGTGGGGTAAAGCTCTCACATGTGCCAATTCTCTTCTCAGGTGTGAA  459
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  ATCCGTGTGGTAAAGCTCTCACATGTGCCATTTCTCTTCTCAGGTGTGAA  500

seq1  AGGAGTCAGAGTGCAGAGAAACCCTCTGAATATACTCAACGTGGTAAAGC  509
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGAGTCAGAGTGCAGAGAAACCCTCTGAATATACTCAACATGGTAAAGC  550

seq1  CTT---------CGCTCACAGTCATGCCCAAAGGCATGAAAGGATTCATA  550
       ||          |||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTCCATGCTCACAGTCATGCCCAAAGGCATGAAAGGATTCATA  600

seq1  CAGAAAAGATCCCCTCTGAAGTTATTCACTGTGTCGAAGACGTTTTACCT  600
      |||||||||||||||||||||||||||||||  |||||||| ||||||||
seq2  CAGAAAAGATCCCCTCTGAAGTTATTCACTGCATCGAAGACTTTTTACCT  650

seq1  TACACTAGTCTCCAAGTACATAGAAGAACACAAACTGGACAGAAACCCTA  650
      ||||| |||||||||||||||| |||| |||||||||| |||||||  ||
seq2  TACACAAGTCTCCAAGTACATAAAAGAGCACAAACTGGCCAGAAACAGTA  700

seq1  TGAATGTAAACAATGTGGTAAAGGATTTGCAAAGCCCAGTCATCTTAAAA  700
      ||||| |||||||||||||||||||||||||   ||||||| ||||||||
seq2  TGAATATAAACAATGTGGTAAAGGATTTGCATGTCCCAGTCTTCTTAAAA  750

seq1  GGCATGAAAGATTTCATACCGGAGAGAAACCCTTCATATGTAATGAATGT  750
      ||||||||||| ||||||| |  |||||||||| || ||||||| | |||
seq2  GGCATGAAAGAATTCATACTGTCGAGAAACCCTACAAATGTAATCAGTGT  800

seq1  GATAAAGTCTTTTCTTTTAAACATCACCTCCAAACACATAT-AAGGGTGC  799
      ||||||| ||||||  ||||| ||   ||||||| |||||| ||||   |
seq2  GATAAAGCCTTTTCCCTTAAATATAGTCTCCAAAGACATATAAAGGACAC  850

seq1  ATACTGGAGAGAAACCCTTCAAATGTAATCAGTGTGATAAATCCTTTTCA  849
      |||||||||| |||||||||||||||||||||||||| ||| ||||||||
seq2  ATACTGGAGAAAAACCCTTCAAATGTAATCAGTGTGAAAAAGCCTTTTCA  900

seq1  AAACATAATCATCTCCAAAGTCATAGAAGAACACATACTGGAGAGAAACC  899
       | |||  | |||| |||| ||||||||||||||||||  || |||||||
seq2  CATCATTGTAATCTTCAAACTCATAGAAGAACACATACCAGAAAGAAACC  950

seq1  CTACAAATGTAATCAATGTGATAAAGCCT  928
      || |||||||||| ||||||| |||||||
seq2  CTTCAAATGTAATGAATGTGACAAAGCCT  979

seq1: chr13_62734031_62735141
seq2: B6Ng01-079A08.g_71_1164

seq1  GAATTCCAGTTTTTTGAGGTATAATTTTTAAATTTATTTTATATGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTTTTGAGGTATAATTTTTAAATTTATTTTATATGTATTT  50

seq1  TAATTTTATTTTGCATGCATGTGTTTGAGAACAGAAGGCAACAGCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTTTGCATGCATGTGTTTGAGAACAGAAGGCAACAGCAAATA  100

seq1  CTTCCCAATAATAGTTAATAACCAGGTAGTTTGGGGAATGGAACCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATAATAGTTAATAACCAGGTAGTTTGGGGAATGGAACCTCTGT  150

seq1  CTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGTCTGTCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGTCTGTCTGAC  200

seq1  AATGTGCTTATTTAAATTGTACTTTTGTACATGTTAAGTAAAAATATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTATTTAAATTGTACTTTTGTACATGTTAAGTAAAAATATTGC  250

seq1  ATTATTTTCTTCTTCATTTTCTATTCTTTATCCATTCCCAAAAGTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTTCTTCATTTTCTATTCTTTATCCATTCCCAAAAGTGTTCA  300

seq1  AATATCTTCTTTGTTAAGGATGAAAAATTCACAAATACATGAAGAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCTTTGTTAAGGATGAAAAATTCACAAATACATGAAGAAAACC  350

seq1  TGCTGTGTGCATTCCTTTGACTGTATTTGTTTTTTCAGGTATGAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGCATTCCTTTGACTGTATTTGTTTTTTCAGGTATGAATAATT  400

seq1  TGCATTGTATATGCCATGAGGAAGCTCATCCCAGCATGAGGATTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTATATGCCATGAGGAAGCTCATCCCAGCATGAGGATTTTTTTC  450

seq1  ACTTGTGGGAGAATCTGCTCCTGAAGTGACCTAGGATATCTTGTGCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGGAGAATCTGCTCCTGAAGTGACCTAGGATATCTTGTGCAAAA  500

seq1  AAACATGAAGAATAAAACTTACAGTGGTAAACATCTCAGATAACACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAGAATAAAACTTACAGTGGTAAACATCTCAGATAACACTTAA  550

seq1  TGATGTCATGACCCCGAACTTCTGGAGCTGCAGGGAAGACTATGGCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATGACCCCGAACTTCTGGAGCTGCAGGGAAGACTATGGCTACT  600

seq1  GTCCTGAGACAATCACAGAATGCCTTGGCTCTCTGGACCTTGCAACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGACAATCACAGAATGCCTTGGCTCTCTGGACCTTGCAACACAC  650

seq1  CCTGTTGACCACTTTTAACTTGGATGACTGTCAAATCCTGGTGTCGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGACCACTTTTAACTTGGATGACTGTCAAATCCTGGTGTCGTCAC  700

seq1  TCTGTAAGTACCATATATATAGGCATGTGCAACCATGCCTGGTTTAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTACCATATATATAGGCATGTGCAACCATGCCTGGTTTAGGTG  750

seq1  GCTTCCACTTCAATTACTAATGCATTAGAGTTACAGCATGTGAAAGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACTTCAATTACTAATGCATTAGAGTTACAGCATGTGAAAGATGA  800

seq1  ACAGTTCCAATTAAGTATATTCAGAAGCAAATTAACTGTGTGACCCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCAATTAAGTATATTCAGAAGCAAATTAACTGTGTGACCCTCAG  850

seq1  TTTTACCATCTGTAGAATAAAAATAGAAGTCTACCCTTGAGCCAGGTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATCTGTAGAATAAAAATAGAAGTCTACCCTTGAGCCAGGTGGT  900

seq1  GATGG-TGTGACCCGTCCAGCAGATCCAGTTATTCGAGGGTCTTGAGGGG  949
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GATGGTTGTGACCCGTCCAGCAGATCCAGTTATTCGAGGGTCTTGA-GGG  949

seq1  ACCTTCTCCTAAGAACCAAATGGGGGGTAGAGAGAGACGAGGGTTTTGTG  999
      ||||||| || |||||||||||||||||||||||||||||||  ||||||
seq2  ACCTTCT-CTTAGAACCAAATGGGGGGTAGAGAGAGACGAGG--TTTGTG  996

seq1  CAAATAACGACAAGGAAAGGTTCTGAATTGCATCAAGACCCCAATGCATT  1049
      |||   ||||||||| || ||||||||||||||| |||  || |||||||
seq2  CAA--TACGACAAGG-AATGTTCTGAATTGCATC-AGA--CCTATGCATT  1040

seq1  AGTCAGGTCCAAGGTTTAAATGCATAAGCAAAAGGGGAAGTACAGATACT  1099
      ||||||||||||||||  |||||   |||||    || ||||| ||||||
seq2  AGTCAGGTCCAAGGTT--AATGC--TAGCAA----GGGAGTAC-GATACT  1081

seq1  TATCAG-CGGGAG  1111
      |||||| ||||||
seq2  TATCAGCCGGGAG  1094