BAC Information

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BAC

Clone NameB6Ng01-079D18
Chromosome13 (Build37)
Map Location 23,822,539 - 23,944,461
singlet/doubletdoublet
Overlap geneHist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Upstream geneV1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe
Downstream geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D18.bB6Ng01-079D18.g
ACCDH894703DH894704
length1,1811,082
definitionDH894703|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D18, 5' end.DH894704|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,943,265 - 23,944,461)(23,822,539 - 23,823,637)
sequence
gaattcctaagacagctagcaaagtaattccttatattttaatattttgt
ttccctaacacttttatattttgactcttctcctttagaagagtacacac
agatgcataaacttagaagcacattcctgaatattccagaaaccagcaag
cagcttaccaaaactatagaagacaaagggccacccaagggcttcactaa
tgatgccgcccacaaggaggacagtaaagattcccaatgtcattcctgca
gagagacagaaagaaaatggtgggacccctgccttctgctagacagataa
tataggctggcagatgaacatgaagaagccaccaaaccacagaatatgca
tatgtaaatgcaagcccttcagactagttttttaattcctatacctctgg
taagtcttcccccccccccctttaaaattcccaagtgacattcaggtgac
tgtcatactaccttttgtgctgtcttaatttatagttataggcatttatt
atagaaataaagcaccatgaagggccaaggttctagtatactctccactt
ttaccctctctacccctctgaagataagcatcacatcaatatattgtaca
agaaacagtcactcaccttctttcctctgcacttttatgctatttgtaaa
tgcactcacgggaagctgcttctccatacatatgctaatgacactgtttt
aatttctacaacttcacagagcatctaatatatagtaggcacattccctc
ctggttcacagctttgcaaataattctaagctttttatgtttagccaact
tgtcaaattccatatttatacagagttgttatttttaaaataaacatgat
cataatggcctgagggttttatgtaactgttttttttcttttctttcttt
catttttttcgatttaaatttgaattacgttatattgtctgtctgcagtg
tgtgtcagagtagactgtccatttgaatgaaatacccatggagcagacaa
gatgcagatcccctaggatgcagtgaaggcgtgagttctgagaacagaac
tggggccttctgcagagcagtgcatgcgtttaacacttgagcactctctc
attctcattcatctcatttatcattggctcttacagatctccatgcatgg
agaattttattctcggcactcatcactcatt
gaattccacggaccgtctgccagtacaaacacccgcaattgcaaaagccg
actgtgaggaaagaagcaagctgcaggtgacatgctctctgtctacacct
cagtggctctcctgcccctggacagcttctgcaggcgacctgttctctgt
ctacacctcagcggctctcctgcccctggacagcttcaagcagaaccctt
cttgttcaactaactcagtgtctgaaactatttaaaatgattagttagca
atgtgagatgggtgggttttgtttttgcatgtgttttaaaaattgtttct
tattaatttattcttgtgtattcttagctggcctcctgaatactgagatt
tacagggatcatgcctgaatgaatgttgaatgttctttttttcctctccc
ctccactaatgctttacataatttgtgttgttcctttcagcaatgagaaa
atagtcctggggtgcccgttcagttggactttcatatgatcatgcgtgag
tgcagcctgagtccccttgagtttattgggagtatgactaagggtgtgtg
ttggaatcaggtgctgggctaatcttgagcccactgtacagttatgaacc
ctttgtatctccatgatcgccatatttattatcatgagtactgataaaac
ttaattatgaacttcataattttctcactataagacaaaagctgctcttg
ccttatgatcaccagcagggctggtcagggccaagacaaagtttctgggt
ccttaaagatactactgagatggagccagggtacactaccaacaggaact
tcagtagaaattggaagcagagttagagtttactaaaatatattttcaac
acatatttacatactggtagcagatagagacactaggagatagttacacc
aactgtatatatagatctcaacagagtagtgcttaagtgactttacagtg
gtcacatactgacttatggactgtagttagatgagtgtcaggacttacat
gactctaggcacttccaattgtgggcataattcaaacatttgggtgggat
atatagttgataaagtaaattgggacaaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23943265_23944461
seq2: B6Ng01-079D18.b_48_1228 (reverse)

seq1  AATGAGTGATGA-TGCCTGTTTAGAATTAAAATCTTCCATGCAATGGAGA  49
      |||||||||||| ||||     |||| ||||||  ||||||| |||||||
seq2  AATGAGTGATGAGTGCC----GAGAA-TAAAATTCTCCATGC-ATGGAGA  44

seq1  TCTTTGTAAGAGCAATTGATTAATGAAGATGAATGTTGGGACTGGAGAGG  99
      ||  ||||||||| | |||| |||| |||||||   || || | ||||| 
seq2  TC--TGTAAGAGCCAATGATAAATG-AGATGAA---TGAGAAT-GAGAGA  87

seq1  TGGCTCCAGTGTTAAACGCATGCACTGCTCTTGCAGAGGGCCCCAGTTCT  149
        |||| ||||||||||||||||||||||| |||||| ||||||||||||
seq2  GTGCTCAAGTGTTAAACGCATGCACTGCTC-TGCAGAAGGCCCCAGTTCT  136

seq1  GTTCTCAGAACTCACGCCTCCACTGCATCCCTAGGGGATCTGCATCCTTG  199
      ||||||||||||||||||| |||||||| |||||||||||||||| ||||
seq2  GTTCTCAGAACTCACGCCTTCACTGCAT-CCTAGGGGATCTGCAT-CTTG  184

seq1  TCTGCCTCCATGGGTATTTCATTCACATGGACAGTCTACTCCTGACACAC  249
      |||| |||||||||||||||||||| |||||||||||||| |||||||||
seq2  TCTG-CTCCATGGGTATTTCATTCAAATGGACAGTCTACT-CTGACACAC  232

seq1  ACTGCAGACAGAC-ATATAACGTAATTCAAAATTAAAATCGAAAAAAATG  298
      ||||||||||||| |||||||||||||| ||||| |||||||||||||||
seq2  ACTGCAGACAGACAATATAACGTAATTC-AAATTTAAATCGAAAAAAATG  281

seq1  AAAGAAAGAAAAGAAAAAAAACAGTTACATAAAACCCTCAGGCCATTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAAGAAAAAAAACAGTTACATAAAACCCTCAGGCCATTATG  331

seq1  ATCATGTTTATTTT-AAAATAACAACTCTGTATAAATATGGAATTTGACA  397
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTATTTTAAAAATAACAACTCTGTATAAATATGGAATTTGACA  381

seq1  AGTTGGCTAAACATAAAAAGCTTAGAATTATTTGCAAAGCTGTGAACCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTAAACATAAAAAGCTTAGAATTATTTGCAAAGCTGTGAACCAG  431

seq1  GAGGGAATGTGCCTACTATATATTAGATGCTCTGTGAAGTTGTAGAAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATGTGCCTACTATATATTAGATGCTCTGTGAAGTTGTAGAAATT  481

seq1  AAAACAGTGTCATTAGCATATGTATGGAGAAGCAGCTTCCCGTGAGTGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGTCATTAGCATATGTATGGAGAAGCAGCTTCCCGTGAGTGCA  531

seq1  TTTACAAATAGCATAAAAGTGCAGAGGAAAGAAGGTGAGTGACTGTTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATAGCATAAAAGTGCAGAGGAAAGAAGGTGAGTGACTGTTTCT  581

seq1  TGTACAATATATTGATGTGATGCTTATCTTCAGAGGGGTAGAGAGGGTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATATATTGATGTGATGCTTATCTTCAGAGGGGTAGAGAGGGTAA  631

seq1  AAGTGGAGAGTATACTAGAACCTTGGCCCTTCATGGTGCTTTATTTCTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGAGTATACTAGAACCTTGGCCCTTCATGGTGCTTTATTTCTAT  681

seq1  AATAAATGCCTATAACTATAAATTAAGACAGCACAAAAGGTAGTATGACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCCTATAACTATAAATTAAGACAGCACAAAAGGTAGTATGACA  731

seq1  GTCACCTGAATGTCACTTGGGAATTTTAAAGGGGGGGGGGGGAAGACTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGAATGTCACTTGGGAATTTTAAAGGGGGGGGGGGGAAGACTTA  781

seq1  CCAGAGGTATAGGAATTAAAAAACTAGTCTGAAGGGCTTGCATTTACATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTATAGGAATTAAAAAACTAGTCTGAAGGGCTTGCATTTACATA  831

seq1  TGCATATTCTGTGGTTTGGTGGCTTCTTCATGTTCATCTGCCAGCCTATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTCTGTGGTTTGGTGGCTTCTTCATGTTCATCTGCCAGCCTATA  881

seq1  TTATCTGTCTAGCAGAAGGCAGGGGTCCCACCATTTTCTTTCTGTCTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTCTAGCAGAAGGCAGGGGTCCCACCATTTTCTTTCTGTCTCTC  931

seq1  TGCAGGAATGACATTGGGAATCTTTACTGTCCTCCTTGTGGGCGGCATCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAATGACATTGGGAATCTTTACTGTCCTCCTTGTGGGCGGCATCA  981

seq1  TTAGTGAAGCCCTTGGGTGGCCCTTTGTCTTCTATAGTTTTGGTAAGCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAGCCCTTGGGTGGCCCTTTGTCTTCTATAGTTTTGGTAAGCTG  1031

seq1  CTTGCTGGTTTCTGGAATATTCAGGAATGTGCTTCTAAGTTTATGCATCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTTTCTGGAATATTCAGGAATGTGCTTCTAAGTTTATGCATCT  1081

seq1  GTGTGTACTCTTCTAAAGGAGAAGAGTCAAAATATAAAAGTGTTAGGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTCTTCTAAAGGAGAAGAGTCAAAATATAAAAGTGTTAGGGAA  1131

seq1  ACAAAATATTAAAATATAAGGAATTACTTTGCTAGCTGTCTTAGGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATTAAAATATAAGGAATTACTTTGCTAGCTGTCTTAGGAATTC  1181

seq1: chr13_23822539_23823637
seq2: B6Ng01-079D18.g_70_1151

seq1  GAATTCCACGGACCGTCTGCCAGTACAAACACCCGCAATTGCAAAAGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGACCGTCTGCCAGTACAAACACCCGCAATTGCAAAAGCCG  50

seq1  ACTGTGAGGAAAGAAGCAAGCTGCAGGTGACATGCTCTCTGTCTACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGAAAGAAGCAAGCTGCAGGTGACATGCTCTCTGTCTACACCT  100

seq1  CAGTGGCTCTCCTGCCCCTGGACAGCTTCTGCAGGCGACCTGTTCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTCTCCTGCCCCTGGACAGCTTCTGCAGGCGACCTGTTCTCTGT  150

seq1  CTACACCTCAGCGGCTCTCCTGCCCCTGGACAGCTTCAAGCAGAACCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTCAGCGGCTCTCCTGCCCCTGGACAGCTTCAAGCAGAACCCTT  200

seq1  CTTGTTCAACTAACTCAGTGTCTGAAACTATTTAAAATGATTAGTTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAACTAACTCAGTGTCTGAAACTATTTAAAATGATTAGTTAGCA  250

seq1  ATGTGAGATGGGTGGGTTTTGTTTTTGCATGTGTTTTAAAAATTGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGATGGGTGGGTTTTGTTTTTGCATGTGTTTTAAAAATTGTTTCT  300

seq1  TATTAATTTATTCTTGTGTATTCTTAGCTGGCCTCCTGAATACTGAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTATTCTTGTGTATTCTTAGCTGGCCTCCTGAATACTGAGATT  350

seq1  TACAGGGATCATGCCTGAATGAATGTTGAATGTTCTTTTTTTCCTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGATCATGCCTGAATGAATGTTGAATGTTCTTTTTTTCCTCTCCC  400

seq1  CTCCACTAATGCTTTACATAATTTGTGTTGTTCCTTTCAGCAATGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTAATGCTTTACATAATTTGTGTTGTTCCTTTCAGCAATGAGAAA  450

seq1  ATAGTCCTGGGGTGCCCGTTCAGTTGGACTTTCATATGATCATGCGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTGGGGTGCCCGTTCAGTTGGACTTTCATATGATCATGCGTGAG  500

seq1  TGCAGCCTGAGTCCCCTTGAGTTTATTGGGAGTATGACTAAGGGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTGAGTCCCCTTGAGTTTATTGGGAGTATGACTAAGGGTGTGTG  550

seq1  TTGGAATCAGGTGCTGGGCTAATCTTGAGCCCACTGTACAGTTATGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCAGGTGCTGGGCTAATCTTGAGCCCACTGTACAGTTATGAACC  600

seq1  CTTTGTATCTCCATGATCGCCATATTTATTATCATGAGTACTGATAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTCCATGATCGCCATATTTATTATCATGAGTACTGATAAAAC  650

seq1  TTAATTATGAACTTCATAATTTTCTCACTATAAGACAAAAGCTGCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGAACTTCATAATTTTCTCACTATAAGACAAAAGCTGCTCTTG  700

seq1  CCTTATGATCACCAGCAGGGCTGGTCAGGGCCAAGACAAAG-TTCTGGGT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTATGATCACCAGCAGGGCTGGTCAGGGCCAAGACAAAGTTTCTGGGT  750

seq1  CCTTAAAGATACTACTGAGATGGAGCCAGGGTACACTACCAACAGGAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGATACTACTGAGATGGAGCCAGGGTACACTACCAACAGGAACT  800

seq1  TCAGTAGAAGTTGGAAGCAGAGTTAGAGTTTAACTAAAATATA-TTTCAA  848
      ||||||||| ||||||||||||||||||||| ||||||||||| ||||||
seq2  TCAGTAGAAATTGGAAGCAGAGTTAGAGTTT-ACTAAAATATATTTTCAA  849

seq1  CACATATTTACATACTGTTAGCAGATAGAGACACATAGGAAGATAGTTAC  898
      ||||||||||||||||| |||||||||||||||| |||| ||||||||||
seq2  CACATATTTACATACTGGTAGCAGATAGAGACAC-TAGG-AGATAGTTAC  897

seq1  ACCAACTGTATATATAGGATTCTCAACAGAGTAGTGCTTAAGTGACTTTA  948
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  ACCAACTGTATATATAG--ATCTCAACAGAGTAGTGCTTAAGTGACTTTA  945

seq1  CAGTGGTCACATACATGACTTTAGTGACTGTAGTTAAGATGAGTGCTCAG  998
      |||||||||||||| |||| |||  |||||||||| ||||||||| ||| 
seq2  CAGTGGTCACATAC-TGAC-TTATGGACTGTAGTT-AGATGAGTG-TCA-  990

seq1  GGACTTACATGACATCATAGGGCAACTCCTAATTTGTGTGCATAATTCAA  1048
      ||||||||||||| || || ||||  |||  | ||||| |||||||||||
seq2  GGACTTACATGAC-TC-TA-GGCACTTCC--AATTGTGGGCATAATTCAA  1035

seq1  CACA-TTGGGTGGGAT-TATAGTTGATAAGGTAAAACCTTGGGGCACAAA  1096
       ||| ||||||||||| |||||||||||| |||||   |||||  |||||
seq2  -ACATTTGGGTGGGATATATAGTTGATAAAGTAAA---TTGGG--ACAAA  1079

seq1  GGC  1099
      |||
seq2  GGC  1082