BAC Information

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BAC

Clone NameB6Ng01-079D23
Chromosome13 (Build37)
Map Location 21,006,840 - 21,129,739
singlet/doubletdoublet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D23.bB6Ng01-079D23.g
ACCDH894712DH894713
length1,1361,146
definitionDH894712|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D23, 5' end.DH894713|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,006,840 - 21,007,987)(21,128,570 - 21,129,739)
sequence
gaattccatatgagaagaaattctgtgaaggtataaactacaagacagtg
ccatactacaacagatcttctttcctagttgagtcaaatgaaagaggaaa
aaaatacatacatatccttatgtagcagtgtttgaggttagcagttaaag
aacctaatttatattagtttttagaatcagtaggaaaaagacagtactag
aagagaaggcagatctagaagatgcagatgtaatttgtttaattggctct
ttcacttggggactggaaaccttaatgacaacattagagaagactgcagg
gtggatggcagagtaatcaaaatctgggacttttccaaatgatgacacag
gaagtaatatttaatcatttgcatgtccttttcaacatacgtcaaggtta
atcaccctatgatggggagacagtctctgaagatgaacatctgaatgacc
taagagagaagccaggctctagccggcagagagttccagaaataactaaa
gcaaaagcttcctgctccaaaagccaaaatgcctgggcatctgagccacc
aatctgaaaaccaacaaaaaaaaaaaactagggcatccccacccgatgcc
cgttttatgctagtcaatactccccctcccccacccacccacccccaaag
atgcttttttggtcaagcactcattcaacaggtattacctggatatactc
taattttatcctaagggctatacttgatcaaatgtaattgacaaagatca
acctaaaacctaaatgtttctatgctcgcagaggggcagagaagaggaga
ggaaattgaaaggcccattgcataattataaatagatacaatttataaat
tgtaaataatataattacaaattagaaatatttgttgagtgacaaaaaaa
aaaatgcttataaccaagcccggtgacacaggactgtaatctcaaatact
tgaaagatgaggaagttaaagggaccctgtctcaaaataaaagtaaaaag
atggctcgggttatagcatagtggagtggtagaagcatttgctagcatgt
gctgactcttcagtttaatctcagtactacagaggaaggaggagataagt
gtgaatattctggagtggaatggcctgtgctaaaac
gaattctattctttgtgtctgagcagcatagctgtaaagttaaatgatgg
gtttgacaacaaaatagagaagtcatctccaggcagctcttgacattgat
ttgaaatgaataacatgactgggctagaagacagtgtcattcctgacctt
gacaaagagtcactgcctagtgggaattaatttgtgaaaggtaaaaaaca
aacgtcttgagagaagccctcctttcagaccctcctcttatttttaacct
gccttatcttaaggctaaatgagatgcaggtctatcccagaaggcctgta
tgaatacagacagtaatcacattccataactaagtgtccagacaactggt
ttactggtgagactatttgaaatggaggcatgaacttcagttttggtatg
aatttataaaaagcaggggccatgacttggtacaaccattaaaaatctga
attgattcactgtctgaagggagtacctgtaatagctctctctagtctat
tcctgagcaggcctttgggatgagagagataccctctgtgatggcaagtc
ttggttgtcaatttgactgcatttgaaataagctagaacctaagctgcag
ggcattccagtgaggcatttttcttaatcagattatttgaatcaggacag
cttactttaaatctgggccacactttctggtggcagcccagataaaagga
tatggaagaggagaactttgcttttttgcccacattctcattggcaagtt
caactgtcacgttgctgccaaaagttttagtattccaaaacagactataa
agaccaacatctctctaggaatccatgaggactccagattgggatttctg
agacatccagtttcactgactgaacaactaccagattctcagcctttcaa
ttatttggcagccattggaaagcttccagaacgaaatcttgtaacccagt
atatatcttatatctctgtgtatgcacatgctgtgtgatgtgcatgtgcg
tgctgcgtgcgtgtgtgttgtgtggtgtgtctgtgtgtgtgtgtgtggcc
ccgactacaaaaattaagactgtaagtcaattctttagttgtgcaagaag
atgagaacgtgaatgaagttatctaactggggtaggagtgaggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21006840_21007987
seq2: B6Ng01-079D23.b_47_1182

seq1  GAATTCCATATGAGAAGAAATTCTGTGAAGGTATAAACTACAAGACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGAGAAGAAATTCTGTGAAGGTATAAACTACAAGACAGTG  50

seq1  CCATACTACAACAGATCTTCTTTCCTAGTTGAGTCAAATGAAAGAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTACAACAGATCTTCTTTCCTAGTTGAGTCAAATGAAAGAGGAAA  100

seq1  AAAATACATACATATCCTTATGTAGCAGTGTTTGAGGTTAGCAGTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATACATATCCTTATGTAGCAGTGTTTGAGGTTAGCAGTTAAAG  150

seq1  AACCTAATTTATATTAGTTTTTAGAATCAGTAGGAAAAAGACAGTACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAATTTATATTAGTTTTTAGAATCAGTAGGAAAAAGACAGTACTAG  200

seq1  AAGAGAAGGCAGATCTAGAAGATGCAGATGTAATTTGTTTAATTGGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGCAGATCTAGAAGATGCAGATGTAATTTGTTTAATTGGCTCT  250

seq1  TTCACTTGGGGACTGGAAACCTTAATGACAACATTAGAGAAGACTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGGGACTGGAAACCTTAATGACAACATTAGAGAAGACTGCAGG  300

seq1  GTGGATGGCAGAGTAATCAAAATCTGGGACTTTTCCAAATGATGACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGCAGAGTAATCAAAATCTGGGACTTTTCCAAATGATGACACAG  350

seq1  GAAGTAATATTTAATCATTTGCATGTCCTTTTCAACATACGTCAAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATATTTAATCATTTGCATGTCCTTTTCAACATACGTCAAGGTTA  400

seq1  ATCACCCTATGATGGGGAGACAGTCTCTGAAGATGAACATCTGAATGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTATGATGGGGAGACAGTCTCTGAAGATGAACATCTGAATGACC  450

seq1  TAAGAGAGAAGCCAGGCTCTAGCCGGCAGAGAGTTCCAGAAATAACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGAAGCCAGGCTCTAGCCGGCAGAGAGTTCCAGAAATAACTAAA  500

seq1  GCAAAAGCTTCCTGCTCCAAAAGCCAAAATGCCTGGGCATCTGAGCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCTTCCTGCTCCAAAAGCCAAAATGCCTGGGCATCTGAGCCACC  550

seq1  AATCTGAAAACCAACAAAAAAAAAAAACTAGGGCATCCCCACCCGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAACCAACAAAAAAAAAAAACTAGGGCATCCCCACCCGATGCC  600

seq1  CGTTTTATGCTAGTCAATACTCCCCCTCCCCCACCCACCCACCCCCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTATGCTAGTCAATACTCCCCCTCCCCCACCCACCCACCCCCAAAG  650

seq1  ATGCTTTTTTGGTCAAGCACTCATTCAACAGGTATTACCTGGATATACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTTGGTCAAGCACTCATTCAACAGGTATTACCTGGATATACTC  700

seq1  TAATTTTATCCTAAGGGCTATACTTGATCAAATGTAATTGACAAAGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATCCTAAGGGCTATACTTGATCAAATGTAATTGACAAAGATCA  750

seq1  ACCTAAAACCTAAATGTTTCTATGCTCGCAGAGGGGCAGAGAAGAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAACCTAAATGTTTCTATGCTCGCAGAGGGGCAGAGAAGAGGAGA  800

seq1  GGAAATTGAAAGGCCCATTGCATAATTATAAATAGATACAATTTATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGAAAGGCCCATTGCATAATTATAAATAGATACAATTTATAAAT  850

seq1  TGTAAATAATATAATTACAAATTAGAAATATTTGTTGAGTGAC-AAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTAAATAATATAATTACAAATTAGAAATATTTGTTGAGTGACAAAAAAA  900

seq1  AAAATGCTTATAACCAAGCCCGGTGACACAGGACTGTAATCTCAAATACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTATAACCAAGCCCGGTGACACAGGACTGTAATCTCAAATACT  950

seq1  TGAAAGGATGAGGAAGTTAAGGAGACCCTGTCTCAAAATAAAAAGTAAAA  999
      ||||| |||||||||||||| | |||||||||||||||| ||||||||||
seq2  TGAAA-GATGAGGAAGTTAAAGGGACCCTGTCTCAAAAT-AAAAGTAAAA  998

seq1  AGATGGCCTCGGG-TATAGCATAGT-GAGTGGTAG-AGCATTTGCTTAGC  1046
      |||||| |||||| ||||||||||| ||||||||| ||||||||| ||||
seq2  AGATGG-CTCGGGTTATAGCATAGTGGAGTGGTAGAAGCATTTGC-TAGC  1046

seq1  ATGTGCTGACTCTTCAGTTTAATCCTCAGTACTACAAGAAGAAAAGGAGG  1096
      ||||||||||||||||||||||| ||||||||||| ||| |  |||||||
seq2  ATGTGCTGACTCTTCAGTTTAAT-CTCAGTACTAC-AGAGG--AAGGAGG  1092

seq1  AGATAAAGTTGTGAATAAATCTGGAGTTTGGGAAGTGGCTCTGTGCTAAA  1146
      ||||||   ||||||| | ||||||||   |||| |||| ||||||||||
seq2  AGATAA--GTGTGAAT-ATTCTGGAGT---GGAA-TGGC-CTGTGCTAAA  1134

seq1  AC  1148
      ||
seq2  AC  1136

seq1: chr13_21128570_21129739
seq2: B6Ng01-079D23.g_67_1212 (reverse)

seq1  TAGCCTCACTCCTACTCCCAATTAGATAACTTCTATTCACTGTCTTCAAT  50
      ||||||||||||||| |||| |||||||||||| ||||||  |||   ||
seq2  TAGCCTCACTCCTAC-CCCAGTTAGATAACTTC-ATTCACGTTCT--CAT  46

seq1  CTTTCTTTGCACAACTAAAAGAAAATATGACCTTACAGTCTTAATTCTCT  100
      |||   |||||||||| ||||||    ||| ||||||||||||||| |  
seq2  CTT--CTTGCACAACT-AAAGAA---TTGA-CTTACAGTCTTAATTTTTG  89

seq1  CGCTCGCTCGCGCGCACACACACACACACACAGACACACACACACACACA  150
         |||     | || ||||||||||||||||||||||| |||||| |||
seq2  TAGTCG-----GGGC-CACACACACACACACAGACACAC-CACACA-ACA  131

seq1  CACACGCACGCACGCACGCACATGCACACTCACACAGGCATGTGCATACA  200
      |||||||||||| ||||||||||||||| ||||||| |||||||||||||
seq2  CACACGCACGCA-GCACGCACATGCACA-TCACACA-GCATGTGCATACA  178

seq1  CAGAGATATTAAGATATTATACTGGGTTACAAGATTTCCTTCTGGAAGCT  250
      |||||||| ||||||| ||||||||||||||||||||| |||||||||||
seq2  CAGAGATA-TAAGATA-TATACTGGGTTACAAGATTTCGTTCTGGAAGCT  226

seq1  TTCCAATGGCTGCCAAATAATTGAAAGGCTGAGAATCTGGTAGTTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGGCTGCCAAATAATTGAAAGGCTGAGAATCTGGTAGTTGTTCA  276

seq1  GTCAGTGAAACTGGATGTCTCAGAAATCCCAATCTGGAGTCCTCATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAAACTGGATGTCTCAGAAATCCCAATCTGGAGTCCTCATGGAT  326

seq1  TCCTAGAGAGATGTTGGTCTTTATAGTCTGTTTTGGAATACTAAAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGAGATGTTGGTCTTTATAGTCTGTTTTGGAATACTAAAACTTT  376

seq1  TGGCAGCAACCTGACAGTTGAACTTGCCAATGAGAATGTGGGCAAAAAAG  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAACGTGACAGTTGAACTTGCCAATGAGAATGTGGGCAAAAAAG  426

seq1  CAAAGTTCTCCTCTTCCATATCCTTTTATCTGGGCTGCCACCAGAAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCTCCTCTTCCATATCCTTTTATCTGGGCTGCCACCAGAAAGTG  476

seq1  TGGCCCAGATTTAAAGTAAGCTGTCCTGATTCAAATAATCTGATTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGATTTAAAGTAAGCTGTCCTGATTCAAATAATCTGATTAAGAA  526

seq1  AAATGCCTCACTGGAATGCCCTGCAGCTTAGGTTCTAGCTTATTTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTCACTGGAATGCCCTGCAGCTTAGGTTCTAGCTTATTTCAAAT  576

seq1  GCAGTCAAATTGACAACCAAGACTTGCCATCACAGAGGGTATCTCTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAATTGACAACCAAGACTTGCCATCACAGAGGGTATCTCTCTCA  626

seq1  TCCCAAAGGCCTGCTCAGGAATAGACTAGAGAGAGCTATTACAGGTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGGCCTGCTCAGGAATAGACTAGAGAGAGCTATTACAGGTACTC  676

seq1  CCTTCAGACAGTGAATCAATTCAGATTTTTAATGGTTGTACCAAGTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGACAGTGAATCAATTCAGATTTTTAATGGTTGTACCAAGTCATG  726

seq1  GCCCCTGCTTTTTATAAATTCATACCAAAACTGAAGTTCATGCCTCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCTTTTTATAAATTCATACCAAAACTGAAGTTCATGCCTCCATT  776

seq1  TCAAATAGTCTCACCAGTAAACCAGTTGTCTGGACACTTAGTTATGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGTCTCACCAGTAAACCAGTTGTCTGGACACTTAGTTATGGAAT  826

seq1  GTGATTACTGTCTGTATTCATACAGGCCTTCTGGGATAGACCTGCATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTACTGTCTGTATTCATACAGGCCTTCTGGGATAGACCTGCATCTC  876

seq1  ATTTAGCCTTAAGATAAGGCAGGTTAAAAATAAGAGGAGGGTCTGAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCTTAAGATAAGGCAGGTTAAAAATAAGAGGAGGGTCTGAAAGG  926

seq1  AGGGCTTCTCTCAAGACGTTTGTTTTTTACCTTTCACAAATTAATTCCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCTCTCAAGACGTTTGTTTTTTACCTTTCACAAATTAATTCCCA  976

seq1  CTAGGCAGTGACTCTTTGTCAAGGTCAGGAATGACACTGTCTTCTAGCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGTGACTCTTTGTCAAGGTCAGGAATGACACTGTCTTCTAGCCC  1026

seq1  AGTCATGTTATTCATTTCAAATCAATGTCAAGAGCTGCCTGGAGATGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTATTCATTTCAAATCAATGTCAAGAGCTGCCTGGAGATGACT  1076

seq1  TCTCTATTTTGTTGTCAAACCCATCATTTAACTTTACAGCTATGCTGCTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTTGTTGTCAAACCCATCATTTAACTTTACAGCTATGCTGCTC  1126

seq1  AGACACAAAGAATAGAATTC  1170
      ||||||||||||||||||||
seq2  AGACACAAAGAATAGAATTC  1146