BAC Information

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BAC

Clone NameB6Ng01-079L22
Chromosome13 (Build37)
Map Location 86,112,045 - 86,282,908
singlet/doubletdoublet
Overlap geneCox7c
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneLOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079L22.bB6Ng01-079L22.g
ACCDH895067DH895068
length1,1371,224
definitionDH895067|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L22, 5' end.DH895068|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,112,045 - 86,113,192)(86,281,653 - 86,282,908)
sequence
gaattcacaaaaaccaaggcagctagaactgggcctgcaggggtctgcac
caggtggggttctagagctaaaagcagaaaagcacacacaacctcatccc
taacccagaagatatttcaaatgattaaccagttgcaaatgaaaacagat
agatttctacaaattttaatgggcaaattaataataagcttttgacacaa
ttttaataagctaactaaataataatcttttggtaaaataatgtttctca
gtcacagccacaaacattcttagtaataaagtctgaaatatccccagaga
actaggattttaaactaacatctgtgcttctgatacagaaggtaaaagat
ttcacagtttgaaaaggaaagttgtgcaatatttgtaaatgagtattgtg
actcatggtctagatacattcagctaatttgcatattagaaaaaatgtaa
ttctgaggagtggttcataaagtttcttggttcatttacttttgtttact
tttgaggccagctctccctcagtgtcccaggttggtcttgagttggtagt
cctgccttactccctgagtgtggattacagttattagacaccatgcttgc
ctccaaactctcagatcaattatcctgggataatggccaaatttttatga
tctctgttcatagttaaaaagaagtttctggaattaaagacaaagataaa
agttcttaaatgaacagcagagatcaaagatcacaagattaatttcaata
tacttttggcaaaatgaaattttacacaattacctttttattatcttttc
tagtggttttccaggtgtagtctttagatcacacacacacaatcacttag
cacttagcacttacttaaaatgcaaattgttgggctctttctaaacctac
tcaatcagaaactccagatagaattcagtgtttaacagtaatttcagtgc
actcaatcattgaaagtcagtatctattcttttggtacatgataattgat
tttcctgtaagacccaatccttttttgttatcagtttatgtctgactatg
gtacctcacatctgatttattaggcatagtgtattaaatcacattgacaa
aggcctcagttttcatcttagccacaaaaaaccatag
gaattctaaatgcagcagaggtaccatcatggacttcaagccagaatttg
gccagagctggaaaaaggacaaactaaaaacgatatagcatttatcaaac
attcaagttctcaaaataaaattctttgactaaattgctggagaattgtt
tgaaacattctaaagaaatcacatacacaactggtaaaatgcaccagtga
aagagagcaaattaaaatgagaattttcctcatggaaacaaatacatttt
gttcattcatctcagtgaaatgattactgaattttcaatacatgctagat
atttttcttagttacaatgatgaagaatactgtgtttcttagtgtaatcc
ttgatacaaatctgggagataaacattgttaatatctacctcattttgga
aatgaggacatttaagtacagaaagctgaattaacttgacaaagatcact
caaatggagaatgatccagctggaaaaaaaaaaaaggtaaaaacagaaaa
actgcaggccaaatagacattctaaactcagggaatatcatcttcacttt
ggaaagaattctcagttgttcccttttgaaatagaaagaagtaaatagaa
aaatatgttttaaacatcatctttattttcatacattcacaacatatata
aaaatgaataaactatcagtaaaattgtgaactcaaacaattaataaata
tatctattttctaaactatggtctctgaacttgacctctaacaaagtgga
aagcatattgggtacaattataaaatcaaattagcatttcagaagaacat
gtgagacacataaaatgtaaagagtagcaattaaaataatttgaaataat
aaaagtaaagtaaatcacatgaagagtaaattcctgaagcttaatcttca
tttaaatatttagaaataatgaagcacggctacaaatctaacaattggaa
atttttctatataaaaaatatcattctcaaatctgagagtattggattca
tctatcataaaattaaacatttttttataatcatatcataataagaagga
atgatgtatttatctcagagagaaaattcagtacagaggaagcagcatta
aagaaatatagtagcatttacgaattacaacagattttactatgagtgat
tagatggcctcattggcttatacaaaataggtcaactggatggctttcga
gaaattcattcatttactctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86112045_86113192
seq2: B6Ng01-079L22.b_49_1185

seq1  GAATTCACAAAAACCAAGGCAGCTAGAACTGGGCCTGCAGGGGTCTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAAACCAAGGCAGCTAGAACTGGGCCTGCAGGGGTCTGCAC  50

seq1  CAGGTGGGGTTCTAGAGCTAAAAGCAGAAAAGCACACACAACCTCATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGGTTCTAGAGCTAAAAGCAGAAAAGCACACACAACCTCATCCC  100

seq1  TAACCCAGAAGATATTTCAAATGATTAACCAGTTGCAAATGAAAACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGAAGATATTTCAAATGATTAACCAGTTGCAAATGAAAACAGAT  150

seq1  AGATTTCTACAAATTTTAATGGGCAAATTAATAATAAGCTTTTGACACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTACAAATTTTAATGGGCAAATTAATAATAAGCTTTTGACACAA  200

seq1  TTTTAATAAGCTAACTAAATAATAATCTTTTGGTAAAATAATGTTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAGCTAACTAAATAATAATCTTTTGGTAAAATAATGTTTCTCA  250

seq1  GTCACAGCCACAAACATTCTTAGTAATAAAGTCTGAAATATCCCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCCACAAACATTCTTAGTAATAAAGTCTGAAATATCCCCAGAGA  300

seq1  ACTAGGATTTTAAACTAACATCTGTGCTTCTGATACAGAAGGTAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATTTTAAACTAACATCTGTGCTTCTGATACAGAAGGTAAAAGAT  350

seq1  TTCACAGTTTGAAAAGGAAAGTTGTGCAATATTTGTAAATGAGTATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTTTGAAAAGGAAAGTTGTGCAATATTTGTAAATGAGTATTGTG  400

seq1  ACTCATGGTCTAGATACATTCAGCTAATTTGCATATTAGAAAAAATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGTCTAGATACATTCAGCTAATTTGCATATTAGAAAAAATGTAA  450

seq1  TTCTGAGGAGTGGTTCATAAAGTTTCTTGGTTCATTTACTTTTGTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGAGTGGTTCATAAAGTTTCTTGGTTCATTTACTTTTGTTTACT  500

seq1  TTTGAGGCCAGCTCTCCCTCAGTGTCCCAGGTTGGTCTTGAGTTGGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCTCTCCCTCAGTGTCCCAGGTTGGTCTTGAGTTGGTAGT  550

seq1  CCTGCCTTACTCCCTGAGTGTGGATTACAGTTATTAGACACCATGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTACTCCCTGAGTGTGGATTACAGTTATTAGACACCATGCTTGC  600

seq1  CTCCAAACTCTCAGATCAATTATCCTGGGATAATGGCCAAATTTTTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACTCTCAGATCAATTATCCTGGGATAATGGCCAAATTTTTATGA  650

seq1  TCTCTGTTCATAGTTAAAAAGAAGTTTCTGGAATTAAAGACAAAGATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTCATAGTTAAAAAGAAGTTTCTGGAATTAAAGACAAAGATAAA  700

seq1  AGTTCTTAAATGAACAGCAGAGATCAAAGATCACAAGATTAATTTCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTAAATGAACAGCAGAGATCAAAGATCACAAGATTAATTTCAATA  750

seq1  TACTTTTGGCAAAATGAAATTTTACACAATTACCTTTTTATTATCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGGCAAAATGAAATTTTACACAATTACCTTTTTATTATCTTTTC  800

seq1  TAGTGGTTTTCCAGGTGTAGTCTTTAGATCACACACACACAATCACTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTTTCCAGGTGTAGTCTTTAGATCACACACACACAATCACTTAG  850

seq1  CACTTAGCACTTACTTAAAATGCAAATTGTTGGGCTCTTTCTAAACCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCACTTACTTAAAATGCAAATTGTTGGGCTCTTTCTAAACCTAC  900

seq1  TCAATCAGAAACTCCAGATAGAATTCAGTGTTTAACAGTAATTTCAGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAGAAACTCCAGATAGAATTCAGTGTTTAACAGTAATTTCAGTGC  950

seq1  ACTCAATCATTGAAAGTCAGTATCTATTCTTTTGGTACATGATAATTGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCATTGAAAGTCAGTATCTATTCTTTTGGTACATGATAATTGAT  1000

seq1  TTTCCTGTAGGAACCAATCCTTTTTGTTAATCCAGTCTATGTCTTGACTA  1050
      ||||||||| || ||||||||||||  | || |||| |||||| ||||||
seq2  TTTCCTGTAAGACCCAATCCTTTTTTGTTAT-CAGTTTATGTC-TGACTA  1048

seq1  TGGTA-CTCACATCTGATTTTTAATATTAAGCATAGGTGTATTAAATCAA  1099
      ||||| |||||||||||||     ||||| ||||| ||||||||||||| 
seq2  TGGTACCTCACATCTGATT-----TATTAGGCATA-GTGTATTAAATCAC  1092

seq1  CATGACAAAAGGGCTCAGTTTTCCATCTTAAGCCACAAAAAAACCATAG  1148
        |||| ||||| ||||||||| |||||| |||||| ||||||||||||
seq2  ATTGAC-AAAGGCCTCAGTTTT-CATCTT-AGCCAC-AAAAAACCATAG  1137

seq1: chr13_86281653_86282908
seq2: B6Ng01-079L22.g_72_1295 (reverse)

seq1  GGAAAGAGTAAATGAATAGAATTTTCTCTGAAAGACATATCAGTAGACTA  50
      ||||||||||||||||| ||| |||||| ||||| |||  |||| |||  
seq2  GGAAAGAGTAAATGAAT-GAA-TTTCTC-GAAAGCCAT-CCAGTTGAC--  44

seq1  TTATTTTGTTATAAGCAAAATTGATGCATACTTAATCACTCATAGTAAAA  100
       ||||||| ||||||| ||  ||| ||  |  ||||||||||||||||||
seq2  CTATTTTG-TATAAGCCAA--TGAGGC-CATCTAATCACTCATAGTAAAA  90

seq1  TACTTGTTTGTAATTCGTAAAAATGCTTAACTAATAATTTCTCTAAATGC  150
      | ||   |||||||||||  |||||||  ||||   |||||| | |||||
seq2  T-CT--GTTGTAATTCGT--AAATGCT--ACTA--TATTTCT-TTAATGC  130

seq1  TGCTT-CTCTGTTACTTGAATTTTCTCTCTGAGGATAAATTAACATTCAT  199
      ||||| ||||| ||| |||||||||||||||| |||||||  ||| ||||
seq2  TGCTTCCTCTG-TAC-TGAATTTTCTCTCTGA-GATAAAT--ACA-TCAT  174

seq1  TTCTTCTTATTATTAATATGATTTATAATATATATGTTTAATTTTATTGA  249
      | |||||||||| | |||||| |||||| | | ||||||||||||| |||
seq2  TCCTTCTTATTA-TGATATGA-TTATAA-AAAAATGTTTAATTTTA-TGA  220

seq1  TATGATTGAATCCAATACTCTCAGATTTGAGAATGATATTTTATTATATA  299
      || || |||||||||||||||||||||||||||||||||||| |||||||
seq2  TA-GA-TGAATCCAATACTCTCAGATTTGAGAATGATATTTT-TTATATA  267

seq1  GAAAAATTTCCAATTGTTAGATTTGTAGCCGTGCTTCATTATTTCTAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTTCCAATTGTTAGATTTGTAGCCGTGCTTCATTATTTCTAAAT  317

seq1  ATTTAAATGAAGATTAAGCTTCAGGAATTTACTCTTCATGTGATTTACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGAAGATTAAGCTTCAGGAATTTACTCTTCATGTGATTTACTT  367

seq1  TACTTTTATTATTTCAAATTATTTTAATTGCTACTCTTTACATTTTATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATTATTTCAAATTATTTTAATTGCTACTCTTTACATTTTATGT  417

seq1  GTCTCACATGTTCTTCTGAAATGCTAATTTGATTTTATAATTGTACCCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACATGTTCTTCTGAAATGCTAATTTGATTTTATAATTGTACCCAA  467

seq1  TATGCTTTCCACTTTGTTAGAGGTCAAGTTCAGAGACCATAGTTTAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTCCACTTTGTTAGAGGTCAAGTTCAGAGACCATAGTTTAGAAA  517

seq1  ATAGATATATTTATTAATTGTTTGAGTTCACAATTTTACTGATAGTTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATATTTATTAATTGTTTGAGTTCACAATTTTACTGATAGTTTAT  567

seq1  TCATTTTTATATATGTTGTGAATGTATGAAAATAAAGATGATGTTTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTATATATGTTGTGAATGTATGAAAATAAAGATGATGTTTAAAA  617

seq1  CATATTTTTCTATTTACTTCTTTCTATTTCAAAAGGGAACAACTGAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTCTATTTACTTCTTTCTATTTCAAAAGGGAACAACTGAGAAT  667

seq1  TCTTTCCAAAGTGAAGATGATATTCCCTGAGTTTAGAATGTCTATTTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAAAGTGAAGATGATATTCCCTGAGTTTAGAATGTCTATTTGGC  717

seq1  CTGCAGTTTTTCTGTTTTTACCTTTTTTTTTTTTCCAGCTGGATCATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTTTCTGTTTTTACCTTTTTTTTTTTTCCAGCTGGATCATTCT  767

seq1  CCATTTGAGTGATCTTTGTCAAGTTAATTCAGCTTTCTGTACTTAAATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGAGTGATCTTTGTCAAGTTAATTCAGCTTTCTGTACTTAAATGT  817

seq1  CCTCATTTCCAAAATGAGGTAGATATTAACAATGTTTATCTCCCAGATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCCAAAATGAGGTAGATATTAACAATGTTTATCTCCCAGATTT  867

seq1  GTATCAAGGATTACACTAAGAAACACAGTATTCTTCATCATTGTAACTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGGATTACACTAAGAAACACAGTATTCTTCATCATTGTAACTAA  917

seq1  GAAAAATATCTAGCATGTATTGAAAATTCAGTAATCATTTCACTGAGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATCTAGCATGTATTGAAAATTCAGTAATCATTTCACTGAGATG  967

seq1  AATGAACAAAATGTATTTGTTTCCATGAGGAAAATTCTCATTTTAATTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAAATGTATTTGTTTCCATGAGGAAAATTCTCATTTTAATTTG  1017

seq1  CTCTCTTTCACTGGTGCATTTTACCAGTTGTGTATGTGATTTCTTTAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCACTGGTGCATTTTACCAGTTGTGTATGTGATTTCTTTAGAA  1067

seq1  TGTTTCAAACAATTCTCCAGCAATTTAGTCAAAGAATTTTATTTTGAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAACAATTCTCCAGCAATTTAGTCAAAGAATTTTATTTTGAGAA  1117

seq1  CTTGAATGTTTGATAAATGCTATATCGTTTTTAGTTTGTCCTTTTTCCAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGTTTGATAAATGCTATATCGTTTTTAGTTTGTCCTTTTTCCAG  1167

seq1  CTCTGGCCAAATTCTGGCTTGAAGTCCATGATGGTACCTCTGCTGCATTT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCAAATTCTGGCTTGAAGTCCATGATGGTACCTCTGCTGCATTT  1217

seq1  AGAATTC  1256
      |||||||
seq2  AGAATTC  1224