BAC Information

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BAC

Clone NameB6Ng01-079O05
Chromosome13 (Build37)
Map Location 43,122,009 - 43,254,079
singlet/doubletdoublet
Overlap genePhactr1, Tbc1d7
Upstream geneHivep1, Edn1, Hn1-ps4
Downstream geneGfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079O05.bB6Ng01-079O05.g
ACCDH895173DH895174
length1,059539
definitionDH895173|Mus musculus domesticus DNA, BAC clone: B6Ng01-079O05, 5' end.DH895174|Mus musculus domesticus DNA, BAC clone: B6Ng01-079O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,122,009 - 43,123,087)(43,253,535 - 43,254,079)
sequence
gaattcaacctccatttaagctgtaagcaaaggggaaacagtggggaact
gctaagttgtgaggtcaggacctatcgagaaataaataaggaaactaagc
ccacagcagacagaagatttaaccatagagcattcaaagaatcctctgtc
cacgtcaaagaggagacaccagggcgcctagaccaagcaaaaacagaaga
aatgttactaagacattaaaagattaattgcagcaagtgaagcccttaca
atcatataatttccagaagatatgataaaaatctgccaaaccagcaaaaa
agggtgagtttaacaaaggtttctgtgtacaacacaaatgattcacacat
atccaccagagtttcttatccacaaattcaaccaactgcagataaaactt
tttaagaaaaaaaaatcatatttctactgaaacacacaggttatctttct
cctcattgtttcctaaatagtaaatacctctctacacagtgttagatatc
aacaatctgagattagttatcccataaataataattatttattattatcc
acctaagatatgcaagcacctcaccattttcatgatggtgtgaaatctgg
gagtcccagcaacaacctccgctcacactgaggtacagcgatctaataat
ttgcatcactatttacctgcaacacatattggaaaataattaataaacta
ccatttataatagcataaatacatgaagggatgcaccatattcttgggct
agaaggctcaatatcactgtaaaaatatcaaccctcccgggatggggtag
gggaatccacaagctcagcctaacttgtgtgcagaaattcaagagatgaa
gaatagcaaaggctagcaattgaaggactgggttgaatggcaggagaacc
atgagctgcggtggggttaaaccgtaaggacctgtacaggtggaagaaag
tggtgggctatgtcacatatagagccacccagggagttagactactctgc
acacacaaagatgaaagtgattctctgtgatagttttcaaaacagtctct
cgcttctct
ctaggctcattcagataacccattgctttcagctctgacttcctgttagt
actcagagggttgaaaatttctcattacctttcctccattaactctcacg
gtgtggggcctagaattggaatgtttgacagccttaggcaattgtgattg
tagctgggattggcagcctctcatttagaatcacttttcctacctgattt
actcagtgattcctcctacggattggctgtaattaagtctaatagcccca
caccggcaataaacaggcccttgctctttctacaggcgcatgcgtgctcc
agcatccctgagggaggtactggaagaaaatgcttgagcaggatctgggg
tgttgtacttaaactctacttagtttgggcagatttacattttagcctgg
taagcaggtcctgagcttgcctgttcccccaccccccaccccccacccca
ggcagtggccacgccctctcattctctgacaactctgagggccagagaag
ctggtcagctttgcagatctctattgttttgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43122009_43123087
seq2: B6Ng01-079O05.b_47_1105

seq1  GAATTCAACCTCCATTTAAGCTGTAAGCAAAGGGGAAACAGTGGGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCCATTTAAGCTGTAAGCAAAGGGGAAACAGTGGGGAACT  50

seq1  GCTAAGTTGTGAGGTCAGGACCTATCGAGAAATAAATAAGGAAACTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTGTGAGGTCAGGACCTATCGAGAAATAAATAAGGAAACTAAGC  100

seq1  CCACAGCAGACAGAAGATTTAACCATAGAGCATTCAAAGAATCCTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGACAGAAGATTTAACCATAGAGCATTCAAAGAATCCTCTGTC  150

seq1  CACGTCAAAGAGGAGACACCAGGGCGCCTAGACCAAGCAAAAACAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAAAGAGGAGACACCAGGGCGCCTAGACCAAGCAAAAACAGAAGA  200

seq1  AATGTTACTAAGACATTAAAAGATTAATTGCAGCAAGTGAAGCCCTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACTAAGACATTAAAAGATTAATTGCAGCAAGTGAAGCCCTTACA  250

seq1  ATCATATAATTTCCAGAAGATATGATAAAAATCTGCCAAACCAGCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATAATTTCCAGAAGATATGATAAAAATCTGCCAAACCAGCAAAAA  300

seq1  AGGGTGAGTTTAACAAAGGTTTCTGTGTACAACACAAATGATTCACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGTTTAACAAAGGTTTCTGTGTACAACACAAATGATTCACACAT  350

seq1  ATCCACCAGAGTTTCTTATCCACAAATTCAACCAACTGCAGATAAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCAGAGTTTCTTATCCACAAATTCAACCAACTGCAGATAAAACTT  400

seq1  TTTAAGAAAAAAAAATCATATTTCTACTGAAACACACAGGTTATCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAAAAAATCATATTTCTACTGAAACACACAGGTTATCTTTCT  450

seq1  CCTCATTGTTTCCTAAATAGTAAATACCTCTCTACACAGTGTTAGATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGTTTCCTAAATAGTAAATACCTCTCTACACAGTGTTAGATATC  500

seq1  AACAATCTGAGATTAGTTATCCCATAAATAATAATTATTTATTATTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTGAGATTAGTTATCCCATAAATAATAATTATTTATTATTATCC  550

seq1  ACCTAAGATATGCAAGCACCTCACCATTTTCATGATGGTGTGAAATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGATATGCAAGCACCTCACCATTTTCATGATGGTGTGAAATCTGG  600

seq1  GAGTCCCAGCAACAACCTCCGCTCACACTGAGGTACAGCGATCTAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAGCAACAACCTCCGCTCACACTGAGGTACAGCGATCTAATAAT  650

seq1  TTGCATCACTATTTACCTGCAACACATATTGGAAAATAATTAATAAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCACTATTTACCTGCAACACATATTGGAAAATAATTAATAAACTA  700

seq1  CCATTTATAATAGCATAAATACATGAAGGGATGCACCATATTCTTGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATAATAGCATAAATACATGAAGGGATGCACCATATTCTTGGGCT  750

seq1  AGAAGGCTCAATATCACTGTAAAAATATCAACCCTCCCGGGATGGGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCAATATCACTGTAAAAATATCAACCCTCCCGGGATGGGGTAG  800

seq1  GGGAATCCACAAGCTCAGCCTAACTTGTGTGCAGAAATTCAAGAGATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCACAAGCTCAGCCTAACTTGTGTGCAGAAATTCAAGAGATGAA  850

seq1  GAATAGCAAAGGCTAGCAATTGAAGGACTGGGTTGAATGGCAGGGAGAAC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATAGCAAAGGCTAGCAATTGAAGGACTGGGTTGAATGGCA-GGAGAAC  899

seq1  CATGAGGCTGCGGTGGGGTTAAAACCGTAGGGACCTGTACAGGGTGGAAG  950
      ||||| |||||||||||||| |||||||| ||||||||||| ||||||||
seq2  CATGA-GCTGCGGTGGGGTT-AAACCGTAAGGACCTGTACA-GGTGGAAG  946

seq1  AAAGTGGTGGGCCTATGTCCACATATAGAGCCACCCAAGGGGAGTTAGAC  1000
      ||||||||||| |||||| ||||||||||||||||||  |||||||||||
seq2  AAAGTGGTGGG-CTATGT-CACATATAGAGCCACCCA--GGGAGTTAGAC  992

seq1  TTACTTCTGCAACACAACAAAGGATGAAAGGTTGATTCTCTGTTGATTAA  1050
       ||| ||||| |||| ||||| ||||||||  |||||||||| ||||  |
seq2  -TAC-TCTGC-ACAC-ACAAA-GATGAAAG--TGATTCTCTG-TGAT--A  1032

seq1  GTTTTTCAAAACAGTCTCTCGCCTTCTCT  1079
      | ||||||||||||||||||| |||||||
seq2  G-TTTTCAAAACAGTCTCTCG-CTTCTCT  1059

seq1: chr13_43253535_43254079
seq2: B6Ng01-079O05.g_70_614 (reverse)

seq1  CACACACACAAAACAATAGAGATCTGCAAAGCTGACCAGCTTCTCTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAAACAATAGAGATCTGCAAAGCTGACCAGCTTCTCTGGCC  50

seq1  CTCAGAGTTGTCAGAGAATGAGAGGGCGTGGCCACTGCCTGGGGTGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTTGTCAGAGAATGAGAGGGCGTGGCCACTGCCTGGGGTGGGGG  100

seq1  GTGGGGGGTGGGGGAACAGGCAAGCTCAGGACCTGCTTACCAGGCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGTGGGGGAACAGGCAAGCTCAGGACCTGCTTACCAGGCTAAAA  150

seq1  TGTAAATCTGCCCAAACTAAGTAGAGTTTAAGTACAACACCCCAGATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCTGCCCAAACTAAGTAGAGTTTAAGTACAACACCCCAGATCCT  200

seq1  GCTCAAGCATTTTCTTCCAGTACCTCCCTCAGGGATGCTGGAGCACGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGCATTTTCTTCCAGTACCTCCCTCAGGGATGCTGGAGCACGCAT  250

seq1  GCGCCTGTAGAAAGAGCAAGGGCCTGTTTATTGCCGGTGTGGGGCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTAGAAAGAGCAAGGGCCTGTTTATTGCCGGTGTGGGGCTATTA  300

seq1  GACTTAATTACAGCCAATCCGTAGGAGGAATCACTGAGTAAATCAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATTACAGCCAATCCGTAGGAGGAATCACTGAGTAAATCAGGTAG  350

seq1  GAAAAGTGATTCTAAATGAGAGGCTGCCAATCCCAGCTACAATCACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGATTCTAAATGAGAGGCTGCCAATCCCAGCTACAATCACAATT  400

seq1  GCCTAAGGCTGTCAAACATTCCAATTCTAGGCCCCACACCGTGAGAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGGCTGTCAAACATTCCAATTCTAGGCCCCACACCGTGAGAGTTA  450

seq1  ATGGAGGAAAGGTAATGAGAAATTTTCAACCCTCTGAGTACTAACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAAAGGTAATGAGAAATTTTCAACCCTCTGAGTACTAACAGGAA  500

seq1  GTCAGAGCTGAAAGCAATGGGTTATCTGAATGAGCCTAGGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCTGAAAGCAATGGGTTATCTGAATGAGCCTAGGAATTC  545