BAC Information

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BAC

Clone NameB6Ng01-080C16
Chromosome13 (Build37)
Map Location 46,744,220 - 46,869,764
singlet/doubletdoublet
Overlap geneCap2, C78339, Nup153, Kif13a
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
Downstream geneLOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C16.bB6Ng01-080C16.g
ACCDH895380DH895381
length311568
definitionDH895380|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C16, 5' end.DH895381|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,744,220 - 46,744,530)(46,869,191 - 46,869,764)
sequence
ttcaatccatgcttttacacacacatatacacaaagagaaaacatctaag
gaaacacaatataccctttatagttactgaaaaacaaaagaaatcctaac
tccatctttctcgtgagtcactttaaaagttctaatttgcctgcatatcc
taagacaaagggtggtggcagggaggggtggggtgtggtagggactcagt
cctcagtttttgctttgtaatacctcatggtctggtttgaaggatagctc
ggcctttgcgttgcatttttgaagtcacccatagtatcagacaaccccat
actggtctcta
caggatggccagagctgcatagcccttgtcacaaaaataattggatggat
agatgatagatagatagatagatagatagatagatagatagataggtaga
tgcatttaatatgagtttaagtttagggaatgtatttgggtagttcgagg
gtaataagactacacatgggagatgctctatcttagagggtgctcccaag
ggaactttttgactaatgtggttatattttaaaacaataatagctattga
gaatctttgagaatctatttcagtttcaggatatgaaataaaagaataaa
caaaaccagaagtgtcctttatctaccttatgagtatttcgaggctgggg
tgtagctcagtgatggagtgtctttaacctgcataagtttgaattcagtc
cctgaaccatcacaattttataaatcatagtgtgtgaattaaaggggggt
ggggcaggggctagaagaagagatctcaaggtaggatgcagaagagaggg
taatggactacatgtcatgtgaaacctattgatttttaggctgatttttt
ttcaactaataaaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46744220_46744530
seq2: B6Ng01-080C16.b_49_359

seq1  TTCAATCCATGCTTTTACACACACATATACACAAAGAGAAAACATCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCATGCTTTTACACACACATATACACAAAGAGAAAACATCTAAG  50

seq1  GAAACACAATATACCCTTTATAGTTACTGAAAAACAAAAGAAATCCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAATATACCCTTTATAGTTACTGAAAAACAAAAGAAATCCTAAC  100

seq1  TCCATCTTTCTCGTGAGTCACTTTAAAAGTTCTAATTTGCCTGCATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTCTCGTGAGTCACTTTAAAAGTTCTAATTTGCCTGCATATCC  150

seq1  TAAGACAAAGGGTGGTGGCAGGGAGGGGTGGGGTGTGGTAGGGACTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAGGGTGGTGGCAGGGAGGGGTGGGGTGTGGTAGGGACTCAGT  200

seq1  CCTCAGTTTTTGCTTTGTAATACCTCATGGTCTGGTTTGAAGGATAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTTTGCTTTGTAATACCTCATGGTCTGGTTTGAAGGATAGCTC  250

seq1  GGCCTTTGCGTTGCAGTTTTGAAGTCACCCATAGTATCAGACAACCCCAT  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGCGTTGCATTTTTGAAGTCACCCATAGTATCAGACAACCCCAT  300

seq1  ACAGGTCTCTA  311
      || ||||||||
seq2  ACTGGTCTCTA  311

seq1: chr13_46869191_46869764
seq2: B6Ng01-080C16.g_68_641 (reverse)

seq1  GTTTTTTTATTAGTTGAAAAAAAATCAGCCTAAAAATCAATAGGTTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTATTAGTTGAAAAAAAATCAGCCTAAAAATCAATAGGTTTCAC  50

seq1  ATGACATGTAGTCCATTACCCTCTCTTCTGCATCCTACCTTGAGATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGTAGTCCATTACCCTCTCTTCTGCATCCTACCTTGAGATCTCT  100

seq1  TCTTCTAGCCCCTGCCCCACCCCCCTTTACTTCACACACTATGATTTATA  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTCTAGCCCCTGCCCCACCCCCCTTTAATTCACACACTATGATTTATA  150

seq1  AAATTGTGATGGTTCAGGGACTGAATTCAAACTTATGCAGGTTAAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGATGGTTCAGGGACTGAATTCAAACTTATGCAGGTTAAAGACA  200

seq1  CTCCATCACTGAGCTACACCCCAGCCTCGAAATACTCATAAGGTAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCACTGAGCTACACCCCAGCCTCGAAATACTCATAAGGTAGATAA  250

seq1  AGGACACTTCTGGTTTTGTTTATTCTTTTATTTCATATCCTGAAACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTTCTGGTTTTGTTTATTCTTTTATTTCATATCCTGAAACTGAA  300

seq1  ATAGATTCTCAAAGATTCTCAATAGCTATTATTGTTTTAAAATATAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTCAAAGATTCTCAATAGCTATTATTGTTTTAAAATATAACCA  350

seq1  CATTAGTCAAAAAGTTCCCTTGGGAGCACCCTCTAAGATAGAGCATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTCAAAAAGTTCCCTTGGGAGCACCCTCTAAGATAGAGCATCTCC  400

seq1  CATGTGTAGTCTTATTACCCTCGAACTACCCAAATACATTCCCTAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAGTCTTATTACCCTCGAACTACCCAAATACATTCCCTAAACTT  450

seq1  AAACTCATATTAAATGCATCTACCTATCTATCTATCTATCTATCTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATATTAAATGCATCTACCTATCTATCTATCTATCTATCTATCTA  500

seq1  TCTATCTATCTATCATCTATCCATCCAATTATTTTTGTGACAAGGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCATCTATCCATCCAATTATTTTTGTGACAAGGGCTAT  550

seq1  GCAGCTCTGGCCATCCTGGAATTC  574
      ||||||||||||||||||||||||
seq2  GCAGCTCTGGCCATCCTGGAATTC  574