BAC Information

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BAC

Clone NameB6Ng01-080F06
Chromosome13 (Build37)
Map Location 44,529,192 - 44,697,105
singlet/doubletdoublet
Overlap geneEG667157
Upstream geneRanbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
Downstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F06.bB6Ng01-080F06.g
ACCDH895498DH895499
length1,1531,087
definitionDH895498|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F06, 5' end.DH895499|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,529,192 - 44,530,373)(44,696,017 - 44,697,105)
sequence
gaattccatagttcatcaaattcattgtcaaacagatgaaataaagagaa
gagaccttacatgtctcagctctgggcatgttatcatcttcaataaatgg
agagtcccattctcagttttcaagaaaagtcatgtgttcactcatccatc
tgcttctatctccagttattcaacccaagtatatgtctaatgtgttgggt
gtatatccttttatttagacggttgttattacatatggtatatcagttct
gtataagttttttttcaattaagtttaaagcatgcacccaggaagataaa
ataaccttttaattacaaagctctctgaatttacatgtctgcattcacct
gggtaaccaaatcgaaacagagagtttctctatagctcttagcacaactt
tgcgtcacagaagtgtctctacccaagagagatggctgtgttttgcctca
ttttacagcagtattttcgacgctgaggtatttactgcaactacttctta
gaagtcagcttgtgtagctgccacatttcatttgatgtttcccaaggaag
gatgtctacatggatctcaacctcttaccatgagtaattccagaacaaac
atcgtcatttctttcagggatccatgtgagatctttttggctagtagaca
caaccaaataagcaagtgtgggcagcatgtttacatatacactttaacta
ggactgcaccagtgctttccaaaaggcttcgttcaacagcacttgcaagt
ctactttatctcgaatcaagtttatacatgtatatatactgtgttaaact
ggacctagatagccaagtttcacaaacattgcacggggaatttgtctata
aatagcaactcactctttcattgaaaaactcctaacaaccatgacaaata
cagcaatggagaagatccaccccagggaattttttttttctatttaatta
aaaccactaagtggttgaggtcactaggagaatactgggaaagaaatgga
cagatttaaaagagaaaacgttgttctgaggatgtctaaaataaaaccag
agagaactgggcctagtgtgcctgctgtgatcagcactgagagtaagcag
aggatcaggtcaagctatcctcacctaatagagcattcgagcgactggct
atg
gaattctcccgaaatgagactcgagatgggagtaagtcttgcgtgacgtg
tttcaaaggaactttaggcggtggttttgttcctcttcaatcgtcacacg
ctctcatgccacagttagtgacatgatgtcctggccaccttttctctttc
tcttccattcaacttgcccttcaaaggattcatctgaggtcgagtccctt
attcatccttataatcttaaaatgtttgagcatgagaggagacatgcatt
catgtcgggaatagaagcccttctagagggttccagggacaagagctttc
ttgaatgcaggcatttggatgcttatacagacacaaaggaatggaagttg
ggtccccagtgaacttttgtcctgtgcgttctcttcactttttattaata
ttgggtttcactctgcagccagggctatgctggaattcatatgattttct
gcttcggcctgaggaaggctgaggaaggctgaggttagaaggagtgagtg
gttagattcatggttacacactgtcagctccattagacttcctcttctgc
cttcttcttttggttttgagacaaggtcctgcctgctaagaagtccaggc
tggccttgaactcacctataattttcacatctttatctcctgagtgatag
gattgcaggtttataccaccacacctggatgccctggagttttagcatgc
ttcctgccccatcccaccccacccttgtcattgaacctaggaccttgccc
aggattagtgcatgctctatcactgaaccatactcctaccagcctggact
tttggttactggaattgagtcagaacaatgtcttcctcgaatgaagtttc
catccctacctcacactcactgaagcggggctcagatggtgggaagtgtc
acgccccttcccccatatccactttctctttcagagaaggcaccctggac
ttccctctccttggccatgctgtggcaaagtctcagcaatatcccgaatc
ctactgcagagtctggataaacatgacttccagttcttcttggcctccac
tatgagtgaggactgtaaatgatggatgggccttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44529192_44530373
seq2: B6Ng01-080F06.b_47_1199

seq1  GAATTCCATAGTTCATCAAATTCATTGTCAAACAGATGAAATAAAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTTCATCAAATTCATTGTCAAACAGATGAAATAAAGAGAA  50

seq1  GAGACCTTACATGTCTCAGCTCTGGGCATGTTATCATCTTCAATAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTACATGTCTCAGCTCTGGGCATGTTATCATCTTCAATAAATGG  100

seq1  AGAGTCCCATTCTCAGTTTTCAAGAAAAGTCATGTGTTCACTCATCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCATTCTCAGTTTTCAAGAAAAGTCATGTGTTCACTCATCCATC  150

seq1  TGCTTCTATCTCCAGTTATTCAACCCAAGTATATGTCTAATGTGTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATCTCCAGTTATTCAACCCAAGTATATGTCTAATGTGTTGGGT  200

seq1  GTATATCCTTTTATTTAGACGGTTGTTATTACATATGGTATATCAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCTTTTATTTAGACGGTTGTTATTACATATGGTATATCAGTTCT  250

seq1  GTATAAGTTTTTTTTCAATTAAGTTTAAAGCATGCACCCAGGAAGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTTTTTTTTCAATTAAGTTTAAAGCATGCACCCAGGAAGATAAA  300

seq1  ATAACCTTTTAATTACAAAGCTCTCTGAATTTACATGTCTGCATTCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTTTAATTACAAAGCTCTCTGAATTTACATGTCTGCATTCACCT  350

seq1  GGGTAACCAAATCGAAACAGAGAGTTTCTCTATAGCTCTTAGCACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACCAAATCGAAACAGAGAGTTTCTCTATAGCTCTTAGCACAACTT  400

seq1  TGCGTCACAGAAGTGTCTCTACCCAAGAGAGATGGCTGTGTTTTGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCACAGAAGTGTCTCTACCCAAGAGAGATGGCTGTGTTTTGCCTCA  450

seq1  TTTTACAGCAGTATTTTCGACGCTGAGGTATTTACTGCAACTACTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGCAGTATTTTCGACGCTGAGGTATTTACTGCAACTACTTCTTA  500

seq1  GAAGTCAGCTTGTGTAGCTGCCACATTTCATTTGATGTTTCCCAAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGCTTGTGTAGCTGCCACATTTCATTTGATGTTTCCCAAGGAAG  550

seq1  GATGTCTACATGGATCTCAACCTCTTACCATGAGTAATTCCAGAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTACATGGATCTCAACCTCTTACCATGAGTAATTCCAGAACAAAC  600

seq1  ATCGTCATTTCTTTCAGGGATCCATGTGAGATCTTTTTGGCTAGTAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCATTTCTTTCAGGGATCCATGTGAGATCTTTTTGGCTAGTAGACA  650

seq1  CAACCAAATAAGCAAGTGTGGGCAGCATGTTTACATATACACTTTAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAATAAGCAAGTGTGGGCAGCATGTTTACATATACACTTTAACTA  700

seq1  GGACTGCACCAGTGCTTTCCAAAAGGCTTCGTTCAACAGCACTTGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCACCAGTGCTTTCCAAAAGGCTTCGTTCAACAGCACTTGCAAGT  750

seq1  CTACTTTATCTCGAATCAAGTTTATACATGTATATATACTGTGTTAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTATCTCGAATCAAGTTTATACATGTATATATACTGTGTTAAACT  800

seq1  GGACCTAGATAGCCAAGTTTCACAAACATTGCACGGGGAATTTGTCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAGATAGCCAAGTTTCACAAACATTGCACGGGGAATTTGTCTATA  850

seq1  AATAGCAACTCACTCTTTCATTGAAAAACTCCTAACAACCATGACAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAACTCACTCTTTCATTGAAAAACTCCTAACAACCATGACAAATA  900

seq1  CAGCAATGGAGAAGATCCACCCCAGGGAATTTTTTTTTTCTATTTAATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGAGAAGATCCACCCCAGGGAATTTTTTTTTTCTATTTAATTA  950

seq1  AAACCACTAAGTGGTTGAGGTCACTTAGGAAGAATAACTGGGAAAGAAAA  1000
      |||||||||||||||||||||||| |||| ||||| |||||||||| |||
seq2  AAACCACTAAGTGGTTGAGGTCAC-TAGG-AGAAT-ACTGGGAAAG-AAA  996

seq1  TGGACAGAATTTAAAAAGAAGAAAAACGTTGTTCTGAGGGATGTCTAAAA  1050
      |||||||| || ||| ||    ||||||||||||||| ||||||||||||
seq2  TGGACAGATTTAAAAGAG----AAAACGTTGTTCTGA-GGATGTCTAAAA  1041

seq1  TAAAAACCAAGAGAGAACTGGGCCTAGTGGTGCCTGCCTGTGATTCCAGC  1100
      |||||  | ||||||||||||||||||| ||||||| |||||||  ||||
seq2  TAAAA--CCAGAGAGAACTGGGCCTAGT-GTGCCTG-CTGTGAT--CAGC  1085

seq1  ACTTGAGAAGTAGAGGCAGGAGGATCAGGGGTTCAAAGCTATCCTCACCT  1150
      || |||| |||  | ||| ||||||||||   || |||||||||||||||
seq2  AC-TGAG-AGT--AAGCA-GAGGATCAGG---TC-AAGCTATCCTCACCT  1126

seq1  ACATAGAGCATCTGAGGCCAGACTGGGCTATG  1182
      | |||||||||  |||    |||| |||||||
seq2  A-ATAGAGCATTCGAG---CGACT-GGCTATG  1153

seq1: chr13_44696017_44697105
seq2: B6Ng01-080F06.g_70_1156 (reverse)

seq1  CTCAAGGCCCATCCCATCATTTACAGTCCTTCACTCATAGTGGAGGGCCA  50
      |||||||||||| |||||||||||||||| |||||||||||||| |||||
seq2  CTCAAGGCCCAT-CCATCATTTACAGTCC-TCACTCATAGTGGA-GGCCA  47

seq1  AGAAG-ACTGGAAGTCATGTTTCT-CAGACTCTTGCAGTAGGATTCGGGA  98
      ||||| |||||||||||||||| | ||||||| |||||||||||||||||
seq2  AGAAGAACTGGAAGTCATGTTTATCCAGACTC-TGCAGTAGGATTCGGGA  96

seq1  TA-TGCTGAGACTTTGCCACAGCATGGCCAAGGGAGAGGGAAGTCCAGGG  147
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATTGCTGAGACTTTGCCACAGCATGGCCAA-GGAGAGGGAAGTCCAGGG  145

seq1  TGCCTTCTCTGAAAGAGACAGTGGATATGGGGGAAGGGGCGTGACACTTC  197
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCCTTCTCTGAAAGAGAAAGTGGATATGGGGGAAGGGGCGTGACACTTC  195

seq1  CCACCATCTGAGCCCCGCTTCAGTGAGTGTGAGGTAGGGATGGAAACTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTGAGCCCCGCTTCAGTGAGTGTGAGGTAGGGATGGAAACTTC  245

seq1  ATTCGAGGAAGACATTGTTCTGACTCAATTCCAGTAACCAAAAGTCCAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAGGAAGACATTGTTCTGACTCAATTCCAGTAACCAAAAGTCCAGG  295

seq1  CTGGTAGGAGTATGGTTCAGTGATAGAGCATGCACTAATCCTGGGCAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGAGTATGGTTCAGTGATAGAGCATGCACTAATCCTGGGCAAGG  345

seq1  TCCTAGGTTCAATGACAAGGGTGGGGTGGGATGGGGCAGGAAGCATGCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTTCAATGACAAGGGTGGGGTGGGATGGGGCAGGAAGCATGCTA  395

seq1  AAACTCCAGGGCATCCAGGTGTGGTGGTATAAACCTGCAATCCTATCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGGGCATCCAGGTGTGGTGGTATAAACCTGCAATCCTATCACT  445

seq1  CAGGAGATAAAGATGTGAAAATTATAGGTGAGTTCAAGGCCAGCCTGGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATAAAGATGTGAAAATTATAGGTGAGTTCAAGGCCAGCCTGGAC  495

seq1  TTCTTAGCAGGCAGGACCTTGTCTCAAAACCAAAAGAAGAAGGCAGAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCAGGCAGGACCTTGTCTCAAAACCAAAAGAAGAAGGCAGAAGA  545

seq1  GGAAGTCTAATGGAGCTGACAGTGTGTAACCATGAATCTAACCACTCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTAATGGAGCTGACAGTGTGTAACCATGAATCTAACCACTCACT  595

seq1  CCTTCTAACCTCAGCCTTCCTCAGCCTTCCTCAGGCCGAAGCAGAAAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAACCTCAGCCTTCCTCAGCCTTCCTCAGGCCGAAGCAGAAAATC  645

seq1  ATATGAATTCCAGCATAGCCCTGGCTGCAGAGTGAAACCCAATATTAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTCCAGCATAGCCCTGGCTGCAGAGTGAAACCCAATATTAATA  695

seq1  AAAAGTGAAGAGAACGCACAGGACAAAAGTTCACTGGGGACCCAACTTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAAGAGAACGCACAGGACAAAAGTTCACTGGGGACCCAACTTCC  745

seq1  ATTCCTTTGTGTCTGTATAAGCATCCAAATGCCTGCATTCAAGAAAGCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGTGTCTGTATAAGCATCCAAATGCCTGCATTCAAGAAAGCTC  795

seq1  TTGTCCCTGGAACCCTCTAGAAGGGCTTCTATTCCCGACATGAATGCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTGGAACCCTCTAGAAGGGCTTCTATTCCCGACATGAATGCATG  845

seq1  TCTCCTCTCATGCTCAAACATTTTAAGATTATAAGGATGAATAAGGGACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCATGCTCAAACATTTTAAGATTATAAGGATGAATAAGGGACT  895

seq1  CGACCTCAGATGAATCCTTTGAAGGGCAAGTTGAATGGAAGAGAAAGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTCAGATGAATCCTTTGAAGGGCAAGTTGAATGGAAGAGAAAGAGA  945

seq1  AAAGGTGGCCAGGACATCATGTCACTAACTGTGGCATGAGAGCGTGTGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGCCAGGACATCATGTCACTAACTGTGGCATGAGAGCGTGTGAC  995

seq1  GATTGAAGAGGAACAAAACCACCGCCTAAAGTTCCTTTGAAACACGTCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGAGGAACAAAACCACCGCCTAAAGTTCCTTTGAAACACGTCAC  1045

seq1  GCAAGACTTACTCCCATCTCGAGTCTCATTTCGGGAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTTACTCCCATCTCGAGTCTCATTTCGGGAGAATTC  1087