BAC Information

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BAC

Clone NameB6Ng01-080I17
Chromosome13 (Build37)
Map Location 41,609,306 - 41,751,988
singlet/doubletdoublet
Overlap geneEG621976, EG328231
Upstream geneLOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
Downstream gene9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080I17.bB6Ng01-080I17.g
ACCDH895654DH895655
length1,2051,001
definitionDH895654|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I17, 5' end.DH895655|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,609,306 - 41,610,535)(41,750,780 - 41,751,988)
sequence
gaattcaacctgttctttattgggaaagcagaacagggtcccccagagcc
tttctcccacataaacattacactgagcaagtatgcatgcacaaagctac
cttcccaagagctaaggacaccaggtgagattctgcactgaaaatgagaa
aggtaacatgggaaagggtagggaagacagttctgtattacctgagtcac
tctctcccccaatcctagagggcacagattagagatacctccatttgaga
gaagtaacagctaaacttatgaccaaagtccactgaggggcttgattcgg
tgaaactcaagctgggaaggctatcacagtatcaggtcccaagctggtac
ctttggagtgagcctcggcgttcaccttgttctcaagccaggtcatgatt
ccaagcatcagtactgcctaacagacccaattctaacaaatcgaagttct
tatttctctcaaattccaaatgatgaatttgtataagatttaagaaaatg
atcattatgccaattgccgctttaattaattatggagtcgagcttgattt
gttaacaaaagcatcgtaaaccctgggcagcattgaaatggagtcagtca
gagtatagaatacaatagtgttaagatcttgaataaaattaatttccttt
taagtttcatcttcctctagataaagagcattcagttttattaactattc
caacaatggctttcatacattgtctgaatgtccaggtatctcagaaaact
agataagatgattttagatgggagaacttctgtatcctccaccaaatgaa
atattcgcaaaacctcgatgcttctggggcatggagtcctctcaaaggac
atttttctgttattacatggctaattttctaaaggatgggaccaccttct
tggcagatccctaaatcatgttccgacagcggtgtctatttacacagctt
agacacattgagaatcgccagcctcctgatgtgttgccgatctttagcca
tgctaattttacatctttgagaactcatttgctcattggtagcgggcttc
cctatagatctctggtcagtcatagtaatgaatacaacaccagtattacg
tggttacataggtcttctccacgggaattcaatgcttcgaatgggaggat
cagtttcaacctttgcagaaagagcgatttaataagtgggagtaatttgg
gctct
gaattcctcattcctcaggtttgcagaggaataagaaagtggaatcagct
atcgaggtcattcgtgaactggcttcacctctgctccttcctaagaaaag
agccagtagccgccacgccaagaaacgagagccaggaaaggtccctggaa
aatggtcatttcggaaaatgaagagagcaaagccacaagaactacgtttt
gacaatatgatgaacccgcgggtcatggaaccttttagttcttgggattt
taggatgcaggggagaagagctagaactgagaagtctacaaaagcaagca
aacaaacaatgaatgtagagagactgcaaagcagagccaagcctcgtcca
ccccataatgttattgggaattgacttgatgtgggagacagcagagaatt
ttgaaaacaaacttactatcaatgaacttagcagaacacagtatgcagac
aattcagaaagtatcatggcaaagcaaaccacccaagtccaacagagcca
ggctagagaggaagacaaagaggcacaaaagggaacaggaacggaggcct
ggggagagagacagggagagaagggagaagggagaaagaaaggggaggaa
gatatcatgggaatccagaatttgcatgcacacacactctgccgagtggg
gacatggttacacaagaacaaagcccgagtctcactcaggcagaaagaca
aggcactgtcaccctgaccccacaaagtgaagcacaggctggagtggttc
gacctctggcttgtccccacctcctgcctctgtgaagagagagcattctt
tttgataatttttccttttcaaggagataatactctcaccaaaaggtcag
gcagctaaaatattcttgctcggattttccgtgagcatttctgcatgatt
tctttgctttcagtctcgctcggaggaatggcggaaagattttccacctg
caggaatcatttccaggcactgttgccacgttgtcttctcagcttctgcc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41609306_41610535
seq2: B6Ng01-080I17.b_41_1245

seq1  GAATTCAACCTGTTCTTTATTGGGAAAGCAGAACAGGGTCCCCCAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTGTTCTTTATTGGGAAAGCAGAACAGGGTCCCCCAGAGCC  50

seq1  TTTCTCCCACATAAACATTACACTGAGCAAGTATGCATGCACAAAGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCACATAAACATTACACTGAGCAAGTATGCATGCACAAAGCTAC  100

seq1  CTTCCCAAGAGCTAAGGACACCAGGTGAGATTCTGCACTGAAAATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGAGCTAAGGACACCAGGTGAGATTCTGCACTGAAAATGAGAA  150

seq1  AGGTAACATGGGAAAGGGTAGGGAAGACAGTTCTGTATTACCTGAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACATGGGAAAGGGTAGGGAAGACAGTTCTGTATTACCTGAGTCAC  200

seq1  TCTCTCCCCCAATCCTAGAGGGCACAGATTAGAGATACCTCCATTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCCAATCCTAGAGGGCACAGATTAGAGATACCTCCATTTGAGA  250

seq1  GAAGTAACAGCTAAACTTATGACCAAAGTCCACTGAGGGGCTTGATTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACAGCTAAACTTATGACCAAAGTCCACTGAGGGGCTTGATTCGG  300

seq1  TGAAACTCAAGCTGGGAAGGCTATCACAGTATCAGGTCCCAAGCTGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAAGCTGGGAAGGCTATCACAGTATCAGGTCCCAAGCTGGTAC  350

seq1  CTTTGGAGTGAGCCTCGGCGTTCACCTTGTTCTCAAGCCAGGTCATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGTGAGCCTCGGCGTTCACCTTGTTCTCAAGCCAGGTCATGATT  400

seq1  CCAAGCATCAGTACTGCCTAACAGACCCAATTCTAACAAATCGAAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCAGTACTGCCTAACAGACCCAATTCTAACAAATCGAAGTTCT  450

seq1  TATTTCTCTCAAATTCCAAATGATGAATTTGTATAAGATTTAAGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTCAAATTCCAAATGATGAATTTGTATAAGATTTAAGAAAATG  500

seq1  ATCATTATGCCAATTGCCGCTTTAATTAATTATGGAGTCGAGCTTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATGCCAATTGCCGCTTTAATTAATTATGGAGTCGAGCTTGATTT  550

seq1  GTTAACAAAAGCATCGTAAACCCTGGGCAGCATTGAAATGGAGTCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAAAAGCATCGTAAACCCTGGGCAGCATTGAAATGGAGTCAGTCA  600

seq1  GAGTATAGAATACAATAGTGTTAAGATCTTGAATAAAATTAATTTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGAATACAATAGTGTTAAGATCTTGAATAAAATTAATTTCCTTT  650

seq1  TAAGTTTCATCTTCCTCTAGATAAAGAGCATTCAGTTTTATTAACTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCATCTTCCTCTAGATAAAGAGCATTCAGTTTTATTAACTATTC  700

seq1  CAACAATGGCTTTCATACATTGTCTGAATGTCCAGGTATCTCAGAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGGCTTTCATACATTGTCTGAATGTCCAGGTATCTCAGAAAACT  750

seq1  AGATAAGATGA-TTTAGATGGGAGAACTTCTGTATCCTCCACCAAATGAA  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGATGATTTTAGATGGGAGAACTTCTGTATCCTCCACCAAATGAA  800

seq1  ATATTCGCAAAACCTCGATGCTTCTGGGGCATGGAGTCCTCTCAAAGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCGCAAAACCTCGATGCTTCTGGGGCATGGAGTCCTCTCAAAGGAC  850

seq1  ATTTTTCTGTTATTACATGGCTAATTTTCTAAAGGATGGGACCACCTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTTATTACATGGCTAATTTTCTAAAGGATGGGACCACCTTCT  900

seq1  TGGCAGATCCCTAAATCATGTTCCGACAGCGGTGTCTATTTACACAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATCCCTAAATCATGTTCCGACAGCGGTGTCTATTTACACAGCTT  950

seq1  AGACACATTGAGAATCGCCAGCCTCCTGATGTTGTGGCCGATCTTTAGCC  999
      ||||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  AGACACATTGAGAATCGCCAGCCTCCTGATG-TGTTGCCGATCTTTAGCC  999

seq1  ATGCTAATTTTTCACATCTTTGAGAACTCATTTGCTCATTGGTAGCGGGC  1049
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTTT--ACATCTTTGAGAACTCATTTGCTCATTGGTAGCGGGC  1047

seq1  TTCCCCTATGACTCTC-GGTCATGTCATAGTAAATGAAATCAACACCAGT  1098
      || ||||||   |||| ||||| |||||||| ||||||  ||||||||||
seq2  TT-CCCTATAGATCTCTGGTCA-GTCATAGT-AATGAATACAACACCAGT  1094

seq1  AATCACGTTGTTACATAGCTCTTTCCTCACGGGAATCTCCAAATGCCTTC  1148
       || |||| ||||||||| || |||  ||||||||| ||  |||| ||||
seq2  -ATTACGTGGTTACATAGGTC-TTCTCCACGGGAAT-TC--AATG-CTTC  1138

seq1  CAGATTGGGAGGAATCAGTTTTCAAAACCCCTTGCAAGGAAAGAGGCTGA  1198
        || ||||||| ||||| ||||||   || |||||  |||||||   ||
seq2  --GAATGGGAGG-ATCAG-TTTCAA---CCTTTGCA--GAAAGAG--CGA  1177

seq1  TTTTCAATCAAGGTGGGAGTAATTATGGCTCT  1230
      |||  |||  | ||||||||||||  ||||||
seq2  TTT--AAT--AAGTGGGAGTAATTTGGGCTCT  1205

seq1: chr13_41750780_41751988
seq2: B6Ng01-080I17.g_68_1068 (reverse)

seq1  AGGCAGAAGCAGGCAGATCTCTATGAGTTCTAGACCAGCCTAGAGTTCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGATAGCCAGGACTACCCGGAAAAAACCCTGACTCGAAGGCCCCTTCTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCCCAAAGAATTGTTTTAACTCTGTTTTCTCTTTTGCAGTAAACTTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTTTGGTCCTTTGGACACTGACTGGTGAGTCCACAGTGGGTGGAATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGCAGAAGACTGAGAAGACAAACGTTGGCACCAGTGCCTGGAAAATGA  250
       ||||||||| |||||||||| |||| ||||| |||||||||| ||||||
seq2  -AGGCAGAAG-CTGAGAAGAC-AACG-TGGCAACAGTGCCTGG-AAATGA  45

seq1  TTCCCTGCAGGTGGAAAAATCTTTCCGCCATTCCTCCGAGGCGAGACTGA  300
      || ||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  TT-CCTGCAGGTGG-AAAATCTTTCCGCCATTCCTCCGA-GCGAGACTGA  92

seq1  AAGCAAAGAAATCATGCAGAAATGCTCACGGAAAATCCGAGCAAGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGCAAAGAAATCATGCAGAAATGCTCACGGAAAATCCGAGCAAGAATA-  141

seq1  TTTTAGCTGCCTGACCTTTTGGTGAGAGTATTATCTCCTTGAAAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTGCCTGACCTTTTGGTGAGAGTATTATCTCCTTGAAAAGGAAA  191

seq1  AATTATC-AAAAGAATGCTCTCTCTTCACAGAGGCAGGAGGTGGGGACAA  449
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAAAAAGAATGCTCTCTCTTCACAGAGGCAGGAGGTGGGGACAA  241

seq1  GCCAGAGGTCGAACCACTCCAGCCTGTGCTTCACTTTGTGGGGTCAGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGTCGAACCACTCCAGCCTGTGCTTCACTTTGTGGGGTCAGGGT  291

seq1  GACAGTGCCTTGTCTTTCTGCCTGAGTGAGACTCGGGCTTTGTTCTTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGCCTTGTCTTTCTGCCTGAGTGAGACTCGGGCTTTGTTCTTGTG  341

seq1  TAACCATGTCCCCACTCGGCAGAGTGTGTGTGCATGCAAATTCTGGATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGTCCCCACTCGGCAGAGTGTGTGTGCATGCAAATTCTGGATTC  391

seq1  CCATGATATCTTCCTCCCCTTTCTTTCTCCCTTCTCCCTTCTCTCCCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATATCTTCCTCCCCTTTCTTTCTCCCTTCTCCCTTCTCTCCCTGT  441

seq1  CTCTCTCCCCAGGCCTCCGTTCCTGTTCCCTTTTGTGCCTCTTTGTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCCAGGCCTCCGTTCCTGTTCCCTTTTGTGCCTCTTTGTCTTC  491

seq1  CTCTCTAGCCTGGCTCTGTTGGACTTGGGTGGTTTGCTTTGCCATGATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCTGGCTCTGTTGGACTTGGGTGGTTTGCTTTGCCATGATAC  541

seq1  TTTCTGAATTGTCTGCATACTGTGTTCTGCTAAGTTCATTGATAGTAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATTGTCTGCATACTGTGTTCTGCTAAGTTCATTGATAGTAAGT  591

seq1  TTGTTTTCAAAATTCTCTGCTGTCTCCCACATCAAGTCAATTCCCAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAAAATTCTCTGCTGTCTCCCACATCAAGTCAATTCCCAATAA  641

seq1  CATTATGGGGTGGACGAGGCTTGGCTCTGCTTTGCAGTCTCTCTACATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGGGGTGGACGAGGCTTGGCTCTGCTTTGCAGTCTCTCTACATTC  691

seq1  ATTGTTTGTTTGCTTGCTTTTGTAGACTTCTCAGTTCTAGCTCTTCTCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTTTGCTTGCTTTTGTAGACTTCTCAGTTCTAGCTCTTCTCCC  741

seq1  CTGCATCCTAAAATCCCAAGAACTAAAAGGTTCCATGACCCGCGGGTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTAAAATCCCAAGAACTAAAAGGTTCCATGACCCGCGGGTTCA  791

seq1  TCATATTGTCAAAACGTAGTTCTTGTGGCTTTGCTCTCTTCATTTTCCGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGTCAAAACGTAGTTCTTGTGGCTTTGCTCTCTTCATTTTCCGA  841

seq1  AATGACCATTTTCCAGGGACCTTTCCTGGCTCTCGTTTCTTGGCGTGGCG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCATTTTCCAGGGACCTTTCCTGGCTCTCGTTTCTTGGCGTGGCG  891

seq1  GCTACTGGCTCTTTTCTTAGGAAGGAGCAGAGGTGAAGCCAGTTCACGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGGCTCTTTTCTTAGGAAGGAGCAGAGGTGAAGCCAGTTCACGAA  941

seq1  TGACCTCGATAGCTGATTCCACTTTCTTATTCCTCTGCAAACCTGAGGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCGATAGCTGATTCCACTTTCTTATTCCTCTGCAAACCTGAGGAA  991

seq1  TGAGGAATTC  1209
      ||||||||||
seq2  TGAGGAATTC  1001