BAC Information

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BAC

Clone NameB6Ng01-081A05
Chromosome13 (Build37)
Map Location 42,685,474 - 42,798,944
singlet/doubletdoublet
Overlap genePhactr1
Upstream geneEG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
Downstream geneTbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081A05.bB6Ng01-081A05.g
ACCDH895987DH895988
length1,059783
definitionDH895987|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A05, 5' end.DH895988|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,797,874 - 42,798,944)(42,685,474 - 42,686,273)
sequence
gaattcagttatgacctcaacaactaccaatacaaaaaaatttttaaatt
gcgttttaaaaaatatgtacaatatttacaatttaagtaagtacaatgtt
ttcttatttttctaaagcctgccaaacagttaaaaatctcagagcctttg
ttcttattacttcatgagctagagccaaaaatagaagtaatatattaggg
cctcaaaataaatattttatggtttcataatttctacagaagagagtcga
gacagaaatacaaacaaaattagggtaatagattattattattatggaaa
attttgaggtaagtaaaaacttatcctttaaatcgtatgcttccagaaca
cccttgaattagtcaggtgagatttgacctttgtttctttatttgttttg
gtatacagttgtcccaggtatcccagtacgttattatacttatattcctc
ttgcttcagccactgagtgctggaatttcaggtgtgtactatcattgcag
gccaaaaatgtcagttctgtatcctcagactgaatctactgagttagagt
ttaaaggatgagatggagtgtacagatttcccaaaaacctattcagtatt
acagtagagttcctggatacgtcaataagacaagcaaaataaatgcaaga
ggtaattaattttaaagcaggaataaacattttattagtcatatctatta
gaactgcgaatacacagaatccttatgagtacataggctgttagaaagca
tacatttcacaatatcactggatacgtttgaataaaacatccatcttcta
tataaaattagaagataaaattctagttttaattaagattatttattatt
tatttattttttatttatttatatgggcttgagcatggctgtgccaaggt
gcgcatgtaccacatgactgtggatgtctgaggaaatgtgtatgaatttg
ttcccttcttccaccctgtgatctagggattgaactcagttgtcagtttg
ctagcaagccccttacaacactgagcatctcactggcctgaaaacaaaat
ttaaagtac
gaattctcctagttcaggcctgattgaatagttaaaacactcacaaaata
tctggtagaatttcagaagggtttacgtggaattggggttaccattttca
gtgactctttgggatggagggccagcctatagccaacattccatctgatt
ttctttatgattagacttcctccattctatgttcctatttgtatgtatgc
agctgcagttggcctttggaagtctggttcttcctaagatctaacaacag
tgagcctgttccactcatagctcttctgaagaataggttttattttggga
aatgaacaccacgctgttacataaagtctgattgataggcattgaggtgg
gcagaagttatcaaagtctgaaagtcaggtgctcggaggggaaagaatgt
attatcattaatgaggaaggaggatgggcttgtctaggctgactgaatga
tgggttggcagtatcaggccccggcagttgttcttacacgctgagtcagc
atcctgaagaccttaactctactcaacccttctcaggatatgtaagtacc
gcttgtcaaaaggagtcaccaccagtctctgtctggccacaagcaaagtc
atttctgttttattcccccagatctcactcaactagaaagctagatggag
tgacttcatcgaatcaaccaaaagtgagtcaagggggtataaatgaggag
aagcaaagggaaggaaggaagcgaggaaggaaggaaaggaaggaaggaag
gaaggaaggaaggaaagaaggaaaagaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42797874_42798944
seq2: B6Ng01-081A05.b_39_1097 (reverse)

seq1  GTACTTTAAAATTTTTGTTTTCAGGCCAGTGAGATGGCTCAGTGTTTGTA  50
      ||||||||||  ||||||||||||||||||||||| |||||||| |||||
seq2  GTACTTTAAA--TTTTGTTTTCAGGCCAGTGAGAT-GCTCAGTG-TTGTA  46

seq1  AGGGGGCTTGCTAGCAAACCTGACAACTTGAGTTCAATCCCTAGAATCCA  100
      | |||||||||||||||| |||||||| |||||||||||||||||   ||
seq2  A-GGGGCTTGCTAGCAAA-CTGACAAC-TGAGTTCAATCCCTAGA--TCA  91

seq1  CAGGGTGGAAGAAGGGAACAAATTCATACACATTTTCCTCAGACATCCAC  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGGTGGAAGAAGGGAACAAATTCATACACA-TTTCCTCAGACATCCAC  140

seq1  AGTCATGTGGTACATGCGCACCTTGGCACAGCCATGCTCAAGCCCATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGGTACATGCGCACCTTGGCACAGCCATGCTCAAGCCCATATA  190

seq1  AATAAATAAATAAATAAATAAATAAATAAATAATCTTAATTAAAACTAGA  250
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  AATAAATAAA-AAATAAATAAAT-AATAAATAATCTTAATTAAAACTAGA  238

seq1  ATTTTATCTTCTAATTTTATATAGAAGATGGATGTTTTATTCAAACGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTTCTAATTTTATATAGAAGATGGATGTTTTATTCAAACGTAT  288

seq1  CCAGTGATATTGTGAAATGTATGCTTTCTAACAGCCTATGTACTCATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATATTGTGAAATGTATGCTTTCTAACAGCCTATGTACTCATAAG  338

seq1  GATTCTGTGTATTCGCAGTTCTAATAGATATGACTAATAAAATGTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGTATTCGCAGTTCTAATAGATATGACTAATAAAATGTTTATT  388

seq1  CCTGCTTTAAAATTAATTACCTCTTGCATTTATTTTGCTTGTCTTATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTAAAATTAATTACCTCTTGCATTTATTTTGCTTGTCTTATTGA  438

seq1  CGTATCCAGGAACTCTACTGTAATACTGAATAGGTTTTTGGGAAATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCCAGGAACTCTACTGTAATACTGAATAGGTTTTTGGGAAATCTGT  488

seq1  ACACTCCATCTCATCCTTTAAACTCTAACTCAGTAGATTCAGTCTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCATCTCATCCTTTAAACTCTAACTCAGTAGATTCAGTCTGAGGA  538

seq1  TACAGAACTGACATTTTTGGCCTGCAATGATAGTACACACCTGAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACTGACATTTTTGGCCTGCAATGATAGTACACACCTGAAATTCC  588

seq1  AGCACTCAGTGGCTGAAGCAAGAGGAATATAAGTATAATAACGTACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGTGGCTGAAGCAAGAGGAATATAAGTATAATAACGTACTGGG  638

seq1  ATACCTGGGACAACTGTATACCAAAACAAATAAAGAAACAAAGGTCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGGACAACTGTATACCAAAACAAATAAAGAAACAAAGGTCAAAT  688

seq1  CTCACCTGACTAATTCAAGGGTGTTCTGGAAGCATACGATTTAAAGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGACTAATTCAAGGGTGTTCTGGAAGCATACGATTTAAAGGATA  738

seq1  AGTTTTTACTTACCTCAAAATTTTCCATAATAATAATAATCTATTACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTACTTACCTCAAAATTTTCCATAATAATAATAATCTATTACCCT  788

seq1  AATTTTGTTTGTATTTCTGTCTCGACTCTCTTCTGTAGAAATTATGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTTGTATTTCTGTCTCGACTCTCTTCTGTAGAAATTATGAAAC  838

seq1  CATAAAATATTTATTTTGAGGCCCTAATATATTACTTCTATTTTTGGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATATTTATTTTGAGGCCCTAATATATTACTTCTATTTTTGGCTC  888

seq1  TAGCTCATGAAGTAATAAGAACAAAGGCTCTGAGATTTTTAACTGTTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATGAAGTAATAAGAACAAAGGCTCTGAGATTTTTAACTGTTTGG  938

seq1  CAGGCTTTAGAAAAATAAGAAAACATTGTACTTACTTAAATTGTAAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTAGAAAAATAAGAAAACATTGTACTTACTTAAATTGTAAATAT  988

seq1  TGTACATATTTTTTAAAACGCAATTTAAAAATTTTTTTGTATTGGTAGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATTTTTTAAAACGCAATTTAAAAATTTTTTTGTATTGGTAGTT  1038

seq1  GTTGAGGTCATAACTGAATTC  1071
      |||||||||||||||||||||
seq2  GTTGAGGTCATAACTGAATTC  1059

seq1: chr13_42685474_42686273
seq2: B6Ng01-081A05.g_73_855

seq1  GAATTCTCCTAGTTCAGGCCTGATTGAATAGTTAAAACACTCACAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAGTTCAGGCCTGATTGAATAGTTAAAACACTCACAAAATA  50

seq1  TCTGGTAGAATTTCAGAAGGGTTTACGTGGAATTGGGGTTACCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGAATTTCAGAAGGGTTTACGTGGAATTGGGGTTACCATTTTCA  100

seq1  GTGACTCTTTGGGATGGAGGGCCAGCCTATAGCCAACATTCCATCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTTTGGGATGGAGGGCCAGCCTATAGCCAACATTCCATCTGATT  150

seq1  TTCTTTATGATTAGACTTCCTCCATTCTATGTTCCTATTTGTATGTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATGATTAGACTTCCTCCATTCTATGTTCCTATTTGTATGTATGC  200

seq1  AGCTGCAGTTGGCCTTTGGAAGTCTGGTTCTTCCTAAGATCTAACAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGTTGGCCTTTGGAAGTCTGGTTCTTCCTAAGATCTAACAACAG  250

seq1  TGAGCCTGTTCCACTCATAGCTCTTCTGAAGAATAGGTTTTATTTTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTTCCACTCATAGCTCTTCTGAAGAATAGGTTTTATTTTGGGA  300

seq1  AATGAACACCACGCTGTTACATAAAGTCTGATTGATAGGCATTGAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACACCACGCTGTTACATAAAGTCTGATTGATAGGCATTGAGGTGG  350

seq1  GCAGAAGTTATCAAAGTCTGAAAGTCAGGTGCTCGGAGGGGAAAGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTTATCAAAGTCTGAAAGTCAGGTGCTCGGAGGGGAAAGAATGT  400

seq1  ATTATCATTAATGAGGAAGGAGGATGGGCTTGTCTAGGCTGACTGAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTAATGAGGAAGGAGGATGGGCTTGTCTAGGCTGACTGAATGA  450

seq1  TGGGTTGGCAGTATCAGGCCCCGGCAGTTGTTCTTACACGCTGAGTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGCAGTATCAGGCCCCGGCAGTTGTTCTTACACGCTGAGTCAGC  500

seq1  ATCCTGAAGACCTTAACTCTACTCAACCCTTCTCAGGATATGTAAGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGACCTTAACTCTACTCAACCCTTCTCAGGATATGTAAGTACC  550

seq1  GCTTGTCAAAAGGAGTCACCACCAGTCTCTGTCTGGCCACAAGCAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAAAAGGAGTCACCACCAGTCTCTGTCTGGCCACAAGCAAAGTC  600

seq1  ATTTCTG-TTTATT-CCCCAGATCTCACTCAACTAGAAAGCTAGATGGAG  648
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTTATTCCCCCAGATCTCACTCAACTAGAAAGCTAGATGGAG  650

seq1  TGACTTCATCGAATCAACCAAAAGTGAGTCAAGGGGGTATAAATGAGGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATCGAATCAACCAAAAGTGAGTCAAGGGGGTATAAATGAGGAG  700

seq1  AAGCAAAGGGAAGGAAGGAAGCGAGGAAGGAAGG-AAGGAAGGAAGGAAG  747
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGCAAAGGGAAGGAAGGAAGCGAGGAAGGAAGGAAAGGAAGGAAGGAAG  750

seq1  GAAGGAAGGAAGGAAGGAAGGAAAAGGAAGGGAAGTGGAAGGGAGGAAGG  797
      ||||||||||||||| ||||||||||  | |||||               
seq2  GAAGGAAGGAAGGAAAGAAGGAAAAG--AAGGAAG---------------  783

seq1  AAG  800
         
seq2  ---  783