BAC Information

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BAC

Clone NameB6Ng01-081E24
Chromosome13 (Build37)
Map Location 82,627,097 - 82,744,176
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018, Mef2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E24.bB6Ng01-081E24.g
ACCDH896204DH896205
length5451,114
definitionDH896204|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E24, 5' end.DH896205|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,743,635 - 82,744,176)(82,627,097 - 82,628,223)
sequence
aactgaattaaactgcattcaactgaactgccccaaactgcactgaacta
aagtcatatgaattctactcactgaagagacccccacttctgactaattt
tgcgttcttttcttaagtaacttctctttcctgttataatgaaagttggg
catatattatctctgaatcattctgtcaaatctttctctaattcatgact
ttgcctgcccctcaatatgtcactcccaaacatagctgttattaaccttg
ccttcattgtttgggattaaaggtgtgtactaagagtgtgtatgtattcc
agccagagggattaaaggtgtatctttccaatctggatcacatagaccta
atagatcttttgatatgatctcttgccagagcaacaatgttacaggataa
aaattcctctacatgtttgtattcttctacaggctgacattcagttaaga
cgagcactatttgttgaagattttttcctttccaaaagagaaacaggatg
agtggaagtggtgcagtgggggagaatgaatgggaggagagaagg
gaattctttaggcattggacacttgagtttgaaatcaaatgaggcataca
cataaatagtcaggcaatgagaagtaaatttttaatgagaagtattttta
atactaatagccatctttgagaataaggtttaagcatttaatatataatg
aacattaggcagactgaatcctctatccagtctgtcaacccagaagcttc
acagaagaccaaggttgttccccaaaagaaaacttcttataggtggacat
taacctgaccctgtgcaaaatcaggctgaatgctaatagaggagaataag
cgacaaagctacacttactcatctctgtccccaaacacgttatccagaaa
tgtggtttgctctattggctataaagtctcatcaagcccagtctaagaga
gttttcctgtgtggctttgggagatccaagagtctatattttattttggc
tgcagtcctctctgatgcttgtaggatgtacaatgaatgccacattacaa
gaaaagagaagtgaacagaagtacaaagcagtattctaaacacccattaa
cagggcatccttcagtgctttctctttgtggcccataacccggttgagca
aattttaatcccttgcctttagccattgggagaacaaatgacaatgaccc
taggtttcctttctgcctaactatatattataaacttgaattatgtaact
tgaatgcgtgtgctctgttttatgacacttaacttagtcaccaacatgaa
aacacacacggtaagcccagagcaaaactacacagcccaatttccttatt
ctagatattattaactatttagaatatatattattctaaaaaaatacaaa
tgttattaaatatggactcttttaagtgctgtttaactcggtctatatag
agtaaagccacacacctatgaggctagccttatctatttccctggaaact
gaataaagaatggatcaattcaaagaaatatttcattaataaatgacata
taattaaatgtctggagtagttgactgtcttagtcagggtttctgttctg
ccacaacatcattgaccagaagcagtggggagaaggttttatcggcttac
ctcatactgctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82743635_82744176
seq2: B6Ng01-081E24.b_53_594 (reverse)

seq1  CCTTCTCTCCTCCCATTCATTCTCCCCCACTGCACCACTTCCACTCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCCTCCCATTCATTCTCCCCCACTGCACCACTTCCACTCATCC  50

seq1  TGTTTCTCTTTTGGAAAGGAAAAAATCTTCAACAAATAGTGCTCGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTTTTGGAAAGGAAAAAATCTTCAACAAATAGTGCTCGTCTTA  100

seq1  ACTGAATGTCAGCCTGTAGAAGAATACAAACATGTAGAGGAATTTTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGTCAGCCTGTAGAAGAATACAAACATGTAGAGGAATTTTTATC  150

seq1  CTGTAACATTGTTGCTCTGGCAAGAGATCATATCAAAAGATCTATTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACATTGTTGCTCTGGCAAGAGATCATATCAAAAGATCTATTAGGT  200

seq1  CTATGTGATCCAGATTGGAAAGATACACCTTTAATCCCTCTGGCTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGATCCAGATTGGAAAGATACACCTTTAATCCCTCTGGCTGGAAT  250

seq1  ACATACACACTCTTAGTACACACCTTTAATCCCAAACAATGAAGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACTCTTAGTACACACCTTTAATCCCAAACAATGAAGGCAAGG  300

seq1  TTAATAACAGCTATGTTTGGGAGTGACATATTGAGGGGCAGGCAAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACAGCTATGTTTGGGAGTGACATATTGAGGGGCAGGCAAAGTCA  350

seq1  TGAATTAGAGAAAGATTTGACAGAATGATTCAGAGATAATATATGCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAGAGAAAGATTTGACAGAATGATTCAGAGATAATATATGCCCAA  400

seq1  CTTTCATTATAACAGGAAAGAGAAGTTACTTAAGAAAAGAACGCAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTATAACAGGAAAGAGAAGTTACTTAAGAAAAGAACGCAAAATT  450

seq1  AGTCAGAAGTGGGGGTCTCTTCAGTGAGTAGAATTCATATGACTTTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGTGGGGGTCTCTTCAGTGAGTAGAATTCATATGACTTTAGTT  500

seq1  CAGTGCAGTTTGGGGCAGTTCAGTTGAATGCAGTTTAATTCA  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTTTGGGGCAGTTCAGTTGAATGCAGTTTAATTCA  542

seq1: chr13_82627097_82628223
seq2: B6Ng01-081E24.g_68_1181

seq1  GAATTCTTTAGGCATTGGACACTTGAGTTTGAAATCAAATGAGGCATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGCATTGGACACTTGAGTTTGAAATCAAATGAGGCATACA  50

seq1  CATAAATAGTCAGGCAATGAGAAGTAAATTTTTAATGAGAAGTATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAGTCAGGCAATGAGAAGTAAATTTTTAATGAGAAGTATTTTTA  100

seq1  ATACTAATAGCCATCTTTGAGAATAAGGTTTAAGCATTTAATATATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATAGCCATCTTTGAGAATAAGGTTTAAGCATTTAATATATAATG  150

seq1  AACATTAGGCAGACTGAATCCTCTATCCAGTCTGTCAACCCAGAAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGGCAGACTGAATCCTCTATCCAGTCTGTCAACCCAGAAGCTTC  200

seq1  ACAGAAGACCAAGGTTGTTCCCCAAAAGAAAACTTCTTATAGGTGGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACCAAGGTTGTTCCCCAAAAGAAAACTTCTTATAGGTGGACAT  250

seq1  TAACCTGACCCTGTGCAAAATCAGGCTGAATGCTAATAGAGGAGAATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGACCCTGTGCAAAATCAGGCTGAATGCTAATAGAGGAGAATAAG  300

seq1  CGACAAAGCTACACTTACTCATCTCTGTCCCCAAACACGTTATCCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAAGCTACACTTACTCATCTCTGTCCCCAAACACGTTATCCAGAAA  350

seq1  TGTGGTTTGCTCTATTGGCTATAAAGTCTCATCAAGCCCAGTCTAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGCTCTATTGGCTATAAAGTCTCATCAAGCCCAGTCTAAGAGA  400

seq1  GTTTTCCTGTGTGGCTTTGGGAGATCCAAGAGTCTATATTTTATTTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTGTGTGGCTTTGGGAGATCCAAGAGTCTATATTTTATTTTGGC  450

seq1  TGCAGTCCTCTCTGATGCTTGTAGGATGTACAATGAATGCCACATTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTCTCTGATGCTTGTAGGATGTACAATGAATGCCACATTACAA  500

seq1  GAAAAGAGAAGTGAACAGAAGTACAAAGCAGTATTCTAAACACCCATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAAGTGAACAGAAGTACAAAGCAGTATTCTAAACACCCATTAA  550

seq1  CAGGGCATCCTTCAGTGCTTTCTCTTTGTGGCCCATAACCCGGTTGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATCCTTCAGTGCTTTCTCTTTGTGGCCCATAACCCGGTTGAGCA  600

seq1  AATTTTAATCCCTTGCCTTTAGCCATTGGGAGAACAAATGACAATGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATCCCTTGCCTTTAGCCATTGGGAGAACAAATGACAATGACCC  650

seq1  TAGGTTTCCTTTCTGCCTAACTATATATTATAAACTTGAATTATGTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCCTTTCTGCCTAACTATATATTATAAACTTGAATTATGTAACT  700

seq1  TGAATGCGTGTGCTCTGTTTTATGACACTTAACTTAGTCACCAACATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCGTGTGCTCTGTTTTATGACACTTAACTTAGTCACCAACATGAA  750

seq1  AACACACACGGTAAGCCCAGAGCAAAACTACACAGCCCAATTTCCTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACGGTAAGCCCAGAGCAAAACTACACAGCCCAATTTCCTTATT  800

seq1  CTAGATATTATTAACTATTTAGAATATATATTATTCTAAAAAAATACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATTATTAACTATTTAGAATATATATTATTCTAAAAAAATACAAA  850

seq1  TGTTATTAAATATGGACTCTTTTAAGTGCTGTTTAACTCGGTCTATATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAAATATGGACTCTTTTAAGTGCTGTTTAACTCGGTCTATATAG  900

seq1  AGTAAAAGCCACACACCTATGAGGCTAGCCTTATCTATTTCCCTGGAAAC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGT-AAAGCCACACACCTATGAGGCTAGCCTTATCTATTTCCCTGGAAAC  949

seq1  TGAATAAAGAATGGATCAAATTCAAAGAAATATTTCATTAATAAATGACA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAATAAAGAATGGATC-AATTCAAAGAAATATTTCATTAATAAATGACA  998

seq1  TATAAATTAAATGTCTGGAAGTAAGTGACTGTCTTAGTCAGGGTTTCTGT  1050
      ||| |||||||||||||| ||||  |||||||||||||||||||||||||
seq2  TAT-AATTAAATGTCTGG-AGTAGTTGACTGTCTTAGTCAGGGTTTCTGT  1046

seq1  TCCTGCACAAACATCA-TGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTT  1099
      | ||||   ||||||| ||||| |||||||   |||||||  |||| |||
seq2  T-CTGCCACAACATCATTGACC-AGAAGCA--GTGGGGAG--AAGGTTTT  1090

seq1  ATTCGGCTTACACTTCCATACTGCTGTT  1127
      | ||||||||| ||  ||||||||||||
seq2  A-TCGGCTTAC-CT--CATACTGCTGTT  1114