BAC Information

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BAC

Clone NameB6Ng01-081F15
Chromosome13 (Build37)
Map Location 82,819,529 - 82,983,782
singlet/doubletdoublet
Overlap genenone
Upstream genePolr3g, 2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018, Mef2c, LOC100043111, LOC623241, LOC432789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F15.bB6Ng01-081F15.g
ACCDH896232DH896233
length1,0441,108
definitionDH896232|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F15, 5' end.DH896233|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,819,529 - 82,820,597)(82,982,656 - 82,983,782)
sequence
agcacttcaagataagtcttgccagacttcatgaataaagaaacatacat
aaacatcattaaggcaattcacagcaagtctatagccaacttcaaaataa
atagaaagacattcagagtaattccactcaaatgtgtaacaagagaaggc
tgtctgctctcttcatatcttctactcagtatagtacttgaacttatacc
aagagtaataagacaactggacaagatgaggaggatacaaattagaaagg
aagaagtctatgcatctttacttggagatgatatgctagtatacataatc
tactagctttcagtttaatatttttatgagactcctaattatgtgatcaa
ctgggtctctgaatccagtgcctgttattggtgtcttttcctagttggtt
tgccttgttcaactttcatgtgatggtttttggtttatcttattagattt
cattttgttaaagaattaaaatgtcttagtaaagccataaactataagat
aaagcaaaacaaagaaaatgtagacatccaagaatttaaatatcatctaa
gaataattcacaaaatgaaattgatagaaactgtgatagatattgttcac
agtaaagagctgatagaaaaaaaaaactgttttgaagtaaatattgggaa
ataaggctgttgttgaaggatgttgaagacaggaaggtatcaaggacctt
gtcagtgttcctccccgacatttcctctgctgggcatccaatgtcagaca
gtcactgtgagcacctcagaaggaaaggcacattctactcacggaaacag
cactaattctgaagatgctccagttgacaaagtgtagaatagattgtgag
ctctagagagattagattggattgtcttcatatgttttacattacgactc
agtatttatgacattctgtgaggttgtcaagagaatacttctttctgtaa
cggactatcattatatagcacaaactgttattatcactcgaatctagatt
tggttattctgagacatgaaagtttggttctactccattttatc
gaattccctagaacatttcttggtaaattggatttttttatgttactgta
aacctagaaaacagaagacatacagaaagttgtaggcaggtaaatggtgg
agaatgaaccctgaagaacatcaaagagccatatactccatgggaagaga
agcttacatataacaagatcaaaaacagagaatctgttactgcctatcta
aacacgaaatatttcatctgtagttcagagatagatcttaactttatagc
ttaacagattggttaaagagatggttcattttaaaaatcttacaaacaag
tttttctttttatcaagttcagtggatatgattccactatggctcatgcc
attgatctttgagagtatagcagttccaggtcaataatattcactatggt
tagataaacatatgggaaaatgttaagtttcacctttattataattaatt
ctggcaaagctgctttaacatataagtagttttaaaaaactaaaatttac
aacagaaaaaaagggtagccgattatctcaaaagtcttattacctttagt
ttgctactaaatatgagataatctttatgtctactattgtaaaaataaag
ttatgatcagagataattaataacccatttctgtctaaacactgcatttt
acacagtgatactcataataacctcaatgctggacagttatattttatag
atgaaaaactacttatacagttacttatttctgggtaacagccaaatgat
gccacagttcttccttattctgatatttattctcttagttagagttctta
tttcctaatagcattcttttccagaacttaatcgtgtgtgtgtgtgtaga
acaatattagaagaaagagatgaaataaatggataaaaaaacaacatagc
aaatatagtatttatactatctctttgaagattctgaacctaaagtaagg
tactagatcaaaaacactcaaaaatgcttccataactatataccacaaaa
gaatcttaattttattgagcctatactttcagtttgcccatttctgtact
ttgaaacatatatccaggcttctgtgttctcatgtctatgaattaactac
caatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82819529_82820597
seq2: B6Ng01-081F15.b_36_1079

seq1  AGCACTTCAAGATAAGTCTTG-GAGACATCATGAATAAAGAAACATACAT  49
      |||||||||||||||||||||  |||| ||||||||||||||||||||||
seq2  AGCACTTCAAGATAAGTCTTGCCAGACTTCATGAATAAAGAAACATACAT  50

seq1  AAACATCATTAAGGCAATTCACAGCAAGTCTATAGCCAACTTCAAAATAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATTAAGGCAATTCACAGCAAGTCTATAGCCAACTTCAAAATAA  100

seq1  ATAGAAAGACATTCAGAGTAATTCCACTCAAATGTGTAACAAGAGAAGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGACATTCAGAGTAATTCCACTCAAATGTGTAACAAGAGAAGGC  150

seq1  TGTCTGCTCTCTTCATATCTTCTACTCAGTATAGTACTTGAACTTATACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTCTCTTCATATCTTCTACTCAGTATAGTACTTGAACTTATACC  200

seq1  AAGAGTAATAAGACAACTGGACAAGATGAGGAGGATACAAATTAGAAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAATAAGACAACTGGACAAGATGAGGAGGATACAAATTAGAAAGG  250

seq1  AAGAAGTCTATGCATCTTTACTTGGAGATGATATGCTAGTATACATAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTATGCATCTTTACTTGGAGATGATATGCTAGTATACATAATC  300

seq1  TACTAGCTTTCAGTTTAATATTTTTATGAGACTCCTAATTATGTGATCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTTTCAGTTTAATATTTTTATGAGACTCCTAATTATGTGATCAA  350

seq1  CTGGGTCTCTGAATCCAGTGCCTGTTATTGGTGTCTTTTCCTAGTTGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTCTGAATCCAGTGCCTGTTATTGGTGTCTTTTCCTAGTTGGTT  400

seq1  TGCCTTGTTCAACTTTCATGTGATGGTTTTTGGTTTATCTTATTAGATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTCAACTTTCATGTGATGGTTTTTGGTTTATCTTATTAGATTT  450

seq1  CATTTTGTTAAAGAATTAAAATGTCTTAGTAAAGCCATAAACTATAAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTAAAGAATTAAAATGTCTTAGTAAAGCCATAAACTATAAGAT  500

seq1  AAAGCAAAACAAAGAAAATGTAGACATCCAAGAATTTAAATATCATCTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAACAAAGAAAATGTAGACATCCAAGAATTTAAATATCATCTAA  550

seq1  GAATAATTCACAAAATGAAATTGATAGAAACTGTGATAGATATTGTTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTCACAAAATGAAATTGATAGAAACTGTGATAGATATTGTTCAC  600

seq1  AGTAAAGAGCTGATAG-AAAAAAAAACTGTTTTGAAGTAAATATTGGGAA  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTAAAGAGCTGATAGAAAAAAAAAACTGTTTTGAAGTAAATATTGGGAA  650

seq1  ATAAGGCTGTTGTTGAAGGATGTTGAAGACAGGAAGGTATCAAGGACCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTGTTGTTGAAGGATGTTGAAGACAGGAAGGTATCAAGGACCTT  700

seq1  GTCAGTGTTCCTCCCCGACATTTTCCTCTGCTTGGCATCCAATGTCAGAC  748
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GTCAGTGTTCCTCCCCGACA-TTTCCTCTGCTGGGCATCCAATGTCAGAC  749

seq1  AGTCACTGTGAGCACCTCAGAAGGGAAGGCACATTCTACTCACGGAAACA  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCACTGTGAGCACCTCAGAAGGAAAGGCACATTCTACTCACGGAAACA  799

seq1  GCACTAATTCTGAAGATGCTCCAGTTGACAAAGTGTAGAATAGAATGTGA  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCACTAATTCTGAAGATGCTCCAGTTGACAAAGTGTAGAATAGATTGTGA  849

seq1  GCTCTAGGAAGAGATCTAGATTGGATTGTCTTCATATGTTTTTACATTAC  898
      |||||||  |||||| |||||||||||||||||||||| |||||||||||
seq2  GCTCTAG--AGAGAT-TAGATTGGATTGTCTTCATATG-TTTTACATTAC  895

seq1  AGACTTCAGTATTTATGACATTCTGTGAGGTTTGTCAAGAGAATAACTTC  948
       ||| ||||||||||||||||||||||||| ||||||||||||| |||||
seq2  -GAC-TCAGTATTTATGACATTCTGTGAGG-TTGTCAAGAGAAT-ACTTC  941

seq1  TTTTCTGTAACGGAACATATTCATGTATATAGCACAAAACTGTTTAATCT  998
       |||||||||||||  |   |||| |||||||||| ||||||||  || |
seq2  -TTTCTGTAACGGACTA---TCAT-TATATAGCAC-AAACTGTT--AT-T  982

seq1  ATCACTCAGAATCTAAGATTTTGTTTATTCTGAGACAATGAAAAGTTTTG  1048
      ||||||| |||||| ||| |||| |||||||||||| ||| |||||||  
seq2  ATCACTC-GAATCT-AGA-TTTGGTTATTCTGAGAC-ATG-AAAGTTT--  1025

seq1  GTTTCTACTCCAGGTTTTATC  1069
      | ||||||||||  |||||||
seq2  GGTTCTACTCCA--TTTTATC  1044

seq1: chr13_82982656_82983782
seq2: B6Ng01-081F15.g_70_1177 (reverse)

seq1  CCATATTGTTGTTTAATGTCATAGACATGTAGGGACATACAGAGAGCCTG  50
      |||||||| |  ||||| ||||||||||| ||    | ||||| ||||||
seq2  CCATATTGGTAGTTAAT-TCATAGACATG-AG---AACACAGA-AGCCTG  44

seq1  GAATATATGTTTTCAAAGTACAGAAATGTGGGCATAACCTGATAGTGATA  100
      | ||||||| ||||||||||||||||  |||||  || |||| ||| |||
seq2  G-ATATATG-TTTCAAAGTACAGAAA--TGGGC--AAACTGAAAGT-ATA  87

seq1  GGCTCAATAATAATTAAGATTCTTTTGTGGTATTATAGTTATGGAAGCAT  150
      |||||||||| ||||||||||||||||||||| |||||||||||||||| 
seq2  GGCTCAATAA-AATTAAGATTCTTTTGTGGTA-TATAGTTATGGAAGCA-  134

seq1  TTTTTGAGTGTTTTTGAATCTAGTACCTTACTTTAGGTTCAGAATCTTCA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTGAGTGTTTTTG-ATCTAGTACCTTACTTTAGGTTCAGAATCTTCA  183

seq1  AAGAGATAGTAATAAATACTATATTTGCTATGTTGTTATTTTATCCCATT  250
      |||||||||| |||||||||||||||||||||||||| |||||| |||||
seq2  AAGAGATAGT-ATAAATACTATATTTGCTATGTTGTTTTTTTAT-CCATT  231

seq1  TATTTCATCTCTTTCTTCTAATATTGTTCTACACACACACACACGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCTCTTTCTTCTAATATTGTTCTACACACACACACACGATTAA  281

seq1  GTTCTGGAAAAGAATGCTATTAGGAAATAAGAACTCTAACTAAGAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAAAAGAATGCTATTAGGAAATAAGAACTCTAACTAAGAGAATA  331

seq1  AATATCAGAATAAGGAAGAACTGTGGCATCATTTGGCTGTTACCCAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGAATAAGGAAGAACTGTGGCATCATTTGGCTGTTACCCAGAAA  381

seq1  TAAGTAACTGTATAAGTAGTTTTTCATCTATAAAATATAACTGTCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACTGTATAAGTAGTTTTTCATCTATAAAATATAACTGTCCAGCA  431

seq1  TTGAGGTTATTATGAGTATCACTGTGTAAAATGCAGTGTTTAGACAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTATTATGAGTATCACTGTGTAAAATGCAGTGTTTAGACAGAAA  481

seq1  TGGGTTATTAATTATCTCTGATCATAACTTTATTTTTACAATAGTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATTAATTATCTCTGATCATAACTTTATTTTTACAATAGTAGACA  531

seq1  TAAAGATTATCTCATATTTAGTAGCAAACTAAAGGTAATAAGACTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTATCTCATATTTAGTAGCAAACTAAAGGTAATAAGACTTTTGA  581

seq1  GATAATCGGCTACCCTTTTTTTCTGTTGTAAATTTTAGTTTTTTAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCGGCTACCCTTTTTTTCTGTTGTAAATTTTAGTTTTTTAAAACT  631

seq1  ACTTATATGTTAAAGCAGCTTTGCCAGAATTAATTATAATAAAGGTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATGTTAAAGCAGCTTTGCCAGAATTAATTATAATAAAGGTGAAA  681

seq1  CTTAACATTTTCCCATATGTTTATCTAACCATAGTGAATATTATTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATTTTCCCATATGTTTATCTAACCATAGTGAATATTATTGACCT  731

seq1  GGAACTGCTATACTCTCAAAGATCAATGGCATGAGCCATAGTGGAATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCTATACTCTCAAAGATCAATGGCATGAGCCATAGTGGAATCAT  781

seq1  ATCCACTGAACTTGATAAAAAGAAAAACTTGTTTGTAAGATTTTTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGAACTTGATAAAAAGAAAAACTTGTTTGTAAGATTTTTAAAAT  831

seq1  GAACCATCTCTTTAACCAATCTGTTAAGCTATAAAGTTAAGATCTATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCTCTTTAACCAATCTGTTAAGCTATAAAGTTAAGATCTATCTC  881

seq1  TGAACTACAGATGAAATATTTCGTGTTTAGATAGGCAGTAACAGATTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACAGATGAAATATTTCGTGTTTAGATAGGCAGTAACAGATTCTC  931

seq1  TGTTTTTGATCTTGTTATATGTAAGCTTCTCTTCCCATGGAGTATATGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGATCTTGTTATATGTAAGCTTCTCTTCCCATGGAGTATATGGC  981

seq1  TCTTTGATGTTCTTCAGGGTTCATTCTCCACCATTTACCTGCCTACAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATGTTCTTCAGGGTTCATTCTCCACCATTTACCTGCCTACAACT  1031

seq1  TTCTGTATGTCTTCTGTTTTCTAGGTTTACAGTAACATAAAAAAATCCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGTCTTCTGTTTTCTAGGTTTACAGTAACATAAAAAAATCCAA  1081

seq1  TTTACCAAGAAATGTTCTAGGGAATTC  1127
      |||||||||||||||||||||||||||
seq2  TTTACCAAGAAATGTTCTAGGGAATTC  1108