BAC Information

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BAC

Clone NameB6Ng01-081G15
Chromosome13 (Build37)
Map Location 24,932,808 - 25,068,856
singlet/doubletdoublet
Overlap geneTtrap, D130043K22Rik, Aldh5a1, Gpld1
Upstream geneSlc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2
Downstream geneMrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081G15.bB6Ng01-081G15.g
ACCDH896276DH896277
length1,008613
definitionDH896276|Mus musculus domesticus DNA, BAC clone: B6Ng01-081G15, 5' end.DH896277|Mus musculus domesticus DNA, BAC clone: B6Ng01-081G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,932,808 - 24,933,815)(25,068,243 - 25,068,856)
sequence
gaattccagcacagctcagatacacagaaaccctgtcttgaaaaacaaca
acaaaagctgtacttacaaatgataatatcagacaccttttaaattgggg
gcagggagtaagtatataaacctttcataatattctttctcttgccaggt
tatcaaatgtggtggtttacctgacaacgtttttgatgcctgggaatttt
taggcaaacctaaacattgccagtatacatgggatacgaaagcaaataac
aacctcaggatccctgctgcttataagcatcgttttgatcgaatattttt
cagagcagaagaggggcaccttattcctcaaagtttagaccttgttgggt
tggaaaaactggactgtggtagatttccgagtgatcactgggggctcttg
tgcaccttgaatgtagtattgtgaaaagcttcccacttgcagctttacac
gtttgttagcactagttctgaatttgtgtaggtctcaacctttcaggaca
tctgggtctaatacagaagaattaataaactggatgattactacagcaaa
agcagctaacgttttactttgtatcttgtgtcctcagaattaagaactgg
tgtttgtaataaatcaaagcatgcttatgtcagaatgtgtgggctttggt
ttaaaggacataacctctccgcttgtgacaaagtcattgttgccatcagg
atttcaagtaatgggcgtatctcagggctaactattgtttgaattaggca
ccaatatattttaaatcattttattaagagaaaaagtaagccattgaact
cttgagactgcattgtcttatattctgtaagttcagaaatgtaagtgaaa
aggccgtgaccaaccgtagtaaagtagatgacagctgttgtatatcagac
ttattttgtcagctgaaagtatatagtgactgatgagtcagtcacagttc
cactgacttccagttactgtcctgataattgtaggttattggccggggaa
ctgacaaa
gaattccagggcagccggagctatagtgtgagtctcagtctctctctctc
tctctctctctctctctgatttatgtatttatgtatttatttatttattt
aatgtatatgagcatgctgtagttgacacatcagaagagggcatcagatc
tcattacagatggttgtgagccaccatgtggtttctgggaattgaactca
ggacctctggaagagcagtcagtgctcttaaccactgagccagatctcca
gccagagaccctgtctcttaaaatggaaaggacctcaaatccagaacgtc
tgcatgaagctgttgtgacagcatgtctgtttggtgaaggcactgtgttt
tatgttcaaagttagtaacagatggagcccaaggcaatgtaggcgactct
aataatgaatggcattgcacgggtgtaggctgccaactgttactgtaatt
attctccttactagtggctcagctggagagcatacctcaagatgtgtcac
atattgggggaggggggcagtggctcagtggtagaatgttatcccagaac
ccctgcaatgagggggctgagggtttgcttggagatagagtacttgcctg
taattgagtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24932808_24933815
seq2: B6Ng01-081G15.b_48_1055

seq1  GAATTCCAGCACAGCTCAGATACACAGAAACCCTGTCTTGAAAAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACAGCTCAGATACACAGAAACCCTGTCTTGAAAAACAACA  50

seq1  ACAAAAGCTGTACTTACAAATGATAATATCAGACACCTTTTAAATTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCTGTACTTACAAATGATAATATCAGACACCTTTTAAATTGGGG  100

seq1  GCAGGGAGTAAGTATATAAACCTTTCATAATATTCTTTCTCTTGCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGTAAGTATATAAACCTTTCATAATATTCTTTCTCTTGCCAGGT  150

seq1  TATCAAATGTGGTGGTTTACCTGACAACGTTTTTGATGCCTGGGAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGTGGTGGTTTACCTGACAACGTTTTTGATGCCTGGGAATTTT  200

seq1  TAGGCAAACCTAAACATTGCCAGTATACATGGGATACGAAAGCAAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAACCTAAACATTGCCAGTATACATGGGATACGAAAGCAAATAAC  250

seq1  AACCTCAGGATCCCTGCTGCTTATAAGCATCGTTTTGATCGAATATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGGATCCCTGCTGCTTATAAGCATCGTTTTGATCGAATATTTTT  300

seq1  CAGAGCAGAAGAGGGGCACCTTATTCCTCAAAGTTTAGACCTTGTTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGAAGAGGGGCACCTTATTCCTCAAAGTTTAGACCTTGTTGGGT  350

seq1  TGGAAAAACTGGACTGTGGTAGATTTCCGAGTGATCACTGGGGGCTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAACTGGACTGTGGTAGATTTCCGAGTGATCACTGGGGGCTCTTG  400

seq1  TGCACCTTGAATGTAGTATTGTGAAAAGCTTCCCACTTGCAGCTTTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTTGAATGTAGTATTGTGAAAAGCTTCCCACTTGCAGCTTTACAC  450

seq1  GTTTGTTAGCACTAGTTCTGAATTTGTGTAGGTCTCAACCTTTCAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAGCACTAGTTCTGAATTTGTGTAGGTCTCAACCTTTCAGGACA  500

seq1  TCTGGGTCTAATACAGAAGAATTAATAAACTGGATGATTACTACAGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCTAATACAGAAGAATTAATAAACTGGATGATTACTACAGCAAA  550

seq1  AGCAGCTAACGTTTTACTTTGTATCTTGTGTCCTCAGAATTAAGAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTAACGTTTTACTTTGTATCTTGTGTCCTCAGAATTAAGAACTGG  600

seq1  TGTTTGTAATAAATCAAAGCATGCTTATGTCAGAATGTGTGGGCTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAATAAATCAAAGCATGCTTATGTCAGAATGTGTGGGCTTTGGT  650

seq1  TTAAAGGACATAACCTCTCCGCTTGTGACAAAGTCATTGTTGCCATCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGACATAACCTCTCCGCTTGTGACAAAGTCATTGTTGCCATCAGG  700

seq1  ATTTCAAGTAATGGGCGTATCTCAGGGCTAACTATTGTTTGAATTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTAATGGGCGTATCTCAGGGCTAACTATTGTTTGAATTAGGCA  750

seq1  CCAATATATTTTAAATCATTTTATTAAGAGAAAAAGTAAGCCATTGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATATTTTAAATCATTTTATTAAGAGAAAAAGTAAGCCATTGAACT  800

seq1  CTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGAAATGTAAGTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGAAATGTAAGTGAAA  850

seq1  AAGCCGTGACCAACCGTAGTAAAGTAGATGACAGCTGTTGTATATCAGAC  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTGACCAACCGTAGTAAAGTAGATGACAGCTGTTGTATATCAGAC  900

seq1  TTAATTTTGTCAGCTGATAGTATATAGTGACTGATGAGTCAGTCACAGTT  950
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TT-ATTTTGTCAGCTGAAAGTATATAGTGACTGATGAGTCAGTCACAGTT  949

seq1  CCACTGACTCCCAGTTACTGTTCTGATTAGTGGTAGTTATTTG-CTGGGA  999
      ||||||||| ||||||||||| ||||| | ||   |||||| | | ||||
seq2  CCACTGACTTCCAGTTACTGTCCTGATAATTGTAGGTTATTGGCCGGGGA  999

seq1  ACTGACAAA  1008
      |||||||||
seq2  ACTGACAAA  1008

seq1: chr13_25068243_25068856
seq2: B6Ng01-081G15.g_70_682 (reverse)

seq1  CTTCACTCAATTACAGGCAAGTGCTCTATCTCCGAGCCATACCCTCAGCC  50
      | |||||||||||||||||||| |||||||||| || || ||||||||||
seq2  CATCACTCAATTACAGGCAAGTACTCTATCTCCAAG-CAAACCCTCAGCC  49

seq1  CCCTCATTGCAGGGGTTCTGGGATAGCATTCTACCACTGAGCCACTGCCC  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCTCATTGCAGGGGTTCTGGGATAACATTCTACCACTGAGCCACTGCCC  99

seq1  CCCTCCCCCAATATGTGACACATCTTGAGGTATGCTCTCCAGCTGAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCAATATGTGACACATCTTGAGGTATGCTCTCCAGCTGAGCCA  149

seq1  CTAGTAAGGAGAATAATTACAGTAACAGTTGGCAGCCTACACCCGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGGAGAATAATTACAGTAACAGTTGGCAGCCTACACCCGTGCAA  199

seq1  TGCCATTCATTATTAGAGTCGCCTACATTGCCTTGGGCTCCATCTGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCATTATTAGAGTCGCCTACATTGCCTTGGGCTCCATCTGTTAC  249

seq1  TAACTTTGAACATAAAACACAGTGCCTTCACCAAACAGACATGCTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGAACATAAAACACAGTGCCTTCACCAAACAGACATGCTGTCAC  299

seq1  AACAGCTTCATGCAGACGTTCTGGATTTGAGGTCCTTTCCATTTTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTCATGCAGACGTTCTGGATTTGAGGTCCTTTCCATTTTAAGAG  349

seq1  ACAGGGTCTCTGGCTGGAGATCTGGCTCAGTGGTTAAGAGCACTGACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTCTGGCTGGAGATCTGGCTCAGTGGTTAAGAGCACTGACTGC  399

seq1  TCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCACA  449

seq1  ACCATCTGTAATGAGATCTGATGCCCTCTTCTGATGTGTCAACTACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTAATGAGATCTGATGCCCTCTTCTGATGTGTCAACTACAGCA  499

seq1  TGCTCATATACATTAAATAAATAAATAAATACATAAATACATAAATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATACATTAAATAAATAAATAAATACATAAATACATAAATCAGA  549

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGACTGAGACTCACACTATAGCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGACTGAGACTCACACTATAGCTCCGG  599

seq1  CTGCCCTGGAATTC  614
      ||||||||||||||
seq2  CTGCCCTGGAATTC  613