BAC Information

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BAC

Clone NameB6Ng01-081J16
Chromosome7 (Build37)13 (Build37)
Map Location 25,679,188 - 25,679,70619,524,928 - 19,526,011
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneV1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19
Downstream geneCd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081J16.bB6Ng01-081J16.g
ACCDH896410DH896411
length9571,077
definitionDH896410|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J16, 5' end.DH896411|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,679,188 - 25,679,706)(19,524,928 - 19,526,011)
sequence
gaattctgtcatttgtaatggacaaagatcgtactactcttgaaatttgg
cattgaaccccaaagtttctgtctccttattcgacactggaacaatgtct
ttcttctttgaaggcagctctgcagattttatattgccatgaatcttgca
tgtaccagggagtgatcaggatcagttctgctggtcaaagaaggtcccaa
cctaacatagagccatcggctgctttctgcgctgctttatggacatcaag
gtgcccacatggaccttctgccactgatcaatcacttataaaggcaactt
tcttatcagaagctttgccacttacaatttcttttttttattttaattag
gtatttgcttcatttacatttccaatgctatagcaaaagtcccccaaaca
ctcctacccacccactcacacttcttggccctggcgttcccctgtactga
ggcatataaagtttgcaagaccaacgggcctctatttccactgagggccg
aataggccatcttctgatacatatgcagctagagatatgagctccggggg
gtactggttagttcatattgttgttccacctatagggttgcagatcgctt
tagctccttgggtactttctgtggctcctccattgggggccctgtgatcc
attcaatagctgactgtgagtatccacttctgtgcttgctaggccctggc
atagtctcacaatagacagctatatcagggtcctttcagcaaattcttgc
tagtgtattgcaatggtgtcagcgtttggaggctgattatgggatggatc
cctggatatggcagtctctagatggtccatcccttttctcaactccaaac
tttgtctctgtaactccttccatgggtgtttgtttcaattctagtagggg
caaatgtccacacttggtcttcattcttcttgagttcatgtgttttcaaa
ttgtatc
gaattctttcagcactcttctaactccaaaaaaatagccttgctcaggta
ttttaacctgtggtcctaaagcatccttacttatatgcccttctccagac
ctcaaactcaatggtatctgtcattctaagtagacctctaagcaatagtc
tgcagaatatgtatttatctggttctcttctctgttagatatttttctac
agctggtgagaagttcactctgtgagacagagctactgagtagagtgagc
actagaggatacatgagggtttttttttcttcccttccctgaaggaaaat
ggtttcctcaaactaattacaaaagataggagaggcttcatgatggcctg
tggttctgttctgcttcactgcattctgtaataaacactctggtcgcaag
actgaattctgatgaaatgacaccatgctgcatgtcactccgcagccaca
gcaaagaggtctccattttcatccgcagcagcctggagctcgggatccca
ccatactctgtgagaatcgaagtacgacagcacattctgaccctcggatt
gcctccaaaccacaaagaacagccacggtgtcaacagccttccttccttc
cctctgaccaagcattctgaagtgatgccctggaagtgtaacatgctggc
tgcgggggtgagtggcttgggaagatgatgttcttttctttctaataaag
cacaggaaaccctggagtggtgaaactcttttcactttccctaacaggtg
agaaggctaaagtgctaggcaatgaactttgctcattaaaaggacaaagg
aaacaaaaagcgtttgaaagtctctaagattcatctgcaaatgtaatctt
tatcatttttcttcacattgtgctctacactgttgtaaaaagaatcactt
agcaacacccatagtgataaatgggtccttcgagtcagttgtcttaactt
atatgaaacttaatactactgtaacagaaagtggtcctcgagggccagtg
ctcagatggattggcagatgtgtgtcaattccctcccgaagttgtggatg
ttcctagttggtgaaggcatcgttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25679188_25679706
seq2: B6Ng01-081J16.b_415_906 (reverse)

seq1  TACAGAGACAAAGTTTGGAGCTGAGATACAGAGACAAAGTTTGGAGCTGA  50
                                |||||||||||||||||||| |||
seq2  --------------------------TACAGAGACAAAGTTTGGAGTTGA  24

seq1  GACAAAAGGATGGACCATCTAGAGACTGCCATACCTGGGGATCCATCCCA  100
      || ||| |||||||||||||||||||||||||| |  |||||||||||||
seq2  GA-AAAGGGATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCA  73

seq1  TAATCAGCCTCCAAACGTTGACACCATTGC-ATACACCTTTTCAGCAAGA  149
      ||||||||||||||||| |||||||||||| ||||||      |||||||
seq2  TAATCAGCCTCCAAACGCTGACACCATTGCAATACAC-----TAGCAAGA  118

seq1  TTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATTCTTGG  199
       |||||||||||||||||||||||||||||| |||||||||||| |  ||
seq2  ATTTGCTGAAAGGACCCTGATATAGCTGTCTATTGTGAGACTATGCCAGG  168

seq1  GCCTAGCAAACACAGAAGTGGATGCCCATAGTCATTTATAGGATGGATCA  249
      ||||||||| ||||||||||||| | || |||||  ||| | ||||||||
seq2  GCCTAGCAAGCACAGAAGTGGATACTCACAGTCAGCTATTGAATGGATCA  218

seq1  CAGGGCCCCTAACGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGA  299
      ||||||||| || |||||||| | ||||||||||||||||||||||| ||
seq2  CAGGGCCCCCAATGGAGGAGCCACAGAAAGTACCCAAGGAGCTAAAGCGA  268

seq1  TCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCG  318

seq1  GAGCTCATGACTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCAGCCA  399
      ||||||||  |||||||||||||||||||||||||||||||| || ||| 
seq2  GAGCTCATATCTCTAGCTGCATATGTATCAGAAGATGGCCTATTCGGCCC  368

seq1  TCAGTGGAAAGAGAGGCCCATTGGTCTTGCAAATTTTATATGCCTAAGTA  449
      |||||||||| |||||||| ||||||||||||| ||||||||||| ||||
seq2  TCAGTGGAAATAGAGGCCCGTTGGTCTTGCAAACTTTATATGCCTCAGTA  418

seq1  CAGGGGAATGCCAGGGCCAAGAAGTGAGAGTGGG-GGGAAGG---GCATG  495
      |||||||| ||||||||||||||||| ||||||| ||| |||   |  ||
seq2  CAGGGGAACGCCAGGGCCAAGAAGTGTGAGTGGGTGGGTAGGAGTGTTTG  468

seq1  GGGGACTTTTGGGATAGCATTGGA  519
      |||||||||||  |||||||||||
seq2  GGGGACTTTTGCTATAGCATTGGA  492

seq1: chr13_19524928_19526011
seq2: B6Ng01-081J16.g_69_1145

seq1  GAATTCTTTCAGCACTCTTCTAACTCCAAAAAAATAGCCTTGCTCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGCACTCTTCTAACTCCAAAAAAATAGCCTTGCTCAGGTA  50

seq1  TTTTAACCTGTGGTCCTAAAGCATCCTTACTTATATGCCCTTCTCCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTGTGGTCCTAAAGCATCCTTACTTATATGCCCTTCTCCAGAC  100

seq1  CTCAAACTCAATGGTATCTGTCATTCTAAGTAGACCTCTAAGCAATAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCAATGGTATCTGTCATTCTAAGTAGACCTCTAAGCAATAGTC  150

seq1  TGCAGAATATGTATTTATCTGGTTCTCTTCTCTGTTAGATATTTTTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATATGTATTTATCTGGTTCTCTTCTCTGTTAGATATTTTTCTAC  200

seq1  AGCTGGTGAGAAGTTCACTCTGTGAGACAGAGCTACTGAGTAGAGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGAGAAGTTCACTCTGTGAGACAGAGCTACTGAGTAGAGTGAGC  250

seq1  ACTAGAGGATACATGAGGGTTTTTTTTTCTTCCCTTCCCTGAAGGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGGATACATGAGGGTTTTTTTTTCTTCCCTTCCCTGAAGGAAAAT  300

seq1  GGTTTCCTCAAACTAATTACAAAAGATAGGAGAGGCTTCATGATGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTCAAACTAATTACAAAAGATAGGAGAGGCTTCATGATGGCCTG  350

seq1  TGGTTCTGTTCTGCTTCACTGCATTCTGTAATAAACACTCTGGTCGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGTTCTGCTTCACTGCATTCTGTAATAAACACTCTGGTCGCAAG  400

seq1  ACTGAATTCTGATGAAATGACACCATGCTGCATGTCACTCCGCAGCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTCTGATGAAATGACACCATGCTGCATGTCACTCCGCAGCCACA  450

seq1  GCAAAGAGGTCTCCATTTTCATCCGCAGCAGCCTGGAGCTCGGGATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGTCTCCATTTTCATCCGCAGCAGCCTGGAGCTCGGGATCCCA  500

seq1  CCATACTCTGTGAGAATCGAAGTACGACAGCACATTCTGACCCTCGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTCTGTGAGAATCGAAGTACGACAGCACATTCTGACCCTCGGATT  550

seq1  GCCTCCAAACCACAAAGAACAGCCACGGTGTCAACAGCCTTCCTTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAACCACAAAGAACAGCCACGGTGTCAACAGCCTTCCTTCCTTC  600

seq1  CCTCTGACCAAGCATTCTGAAGTGATGCCCTGGAAGTGTAACATGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCAAGCATTCTGAAGTGATGCCCTGGAAGTGTAACATGCTGGC  650

seq1  TGCGGGGGTGAGTGGCTTGGGAAGATGATGTTCTTTTCTTTCTAATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGGTGAGTGGCTTGGGAAGATGATGTTCTTTTCTTTCTAATAAAG  700

seq1  CACAGGAAACCCTGGAGTGGTGAAACTCTTTTCACTTTCCCTAACAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAACCCTGGAGTGGTGAAACTCTTTTCACTTTCCCTAACAGGTG  750

seq1  AGAAGGCTAAAGTGCTAGGCAATGAACTTTGCTCATTAAAAGGACAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTAAAGTGCTAGGCAATGAACTTTGCTCATTAAAAGGACAAAGG  800

seq1  AAACAAAAAAGCGTTTGAAAGTCTCTAAGATTCATCTGCAAATGTAATCT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAC-AAAAAGCGTTTGAAAGTCTCTAAGATTCATCTGCAAATGTAATCT  849

seq1  TTATCATTTTTCTTCACAATGTGCTCTACACTGTTGTAAAAAGAATCACT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTATCATTTTTCTTCACATTGTGCTCTACACTGTTGTAAAAAGAATCACT  899

seq1  TAGCAACACCCATAGTGATAAATGGGTCCTTCGAGTCAGTTGTCTTAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACACCCATAGTGATAAATGGGTCCTTCGAGTCAGTTGTCTTAACT  949

seq1  TATATGAAACTTAATACTACGGTAACAGAAAGTGTTCCTCGAGGGCCAGT  1000
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  TATATGAAACTTAATACTACTGTAACAGAAAGTGGTCCTCGAGGGCCAGT  999

seq1  GCTCCAGAATGGATTGGCAGAATGTGTGTCAATTCCACTTCCGGAAGTTG  1050
      ||| ||| |||||||||||| ||||||||||||||  | ||| |||||||
seq2  GCT-CAG-ATGGATTGGCAG-ATGTGTGTCAATTC--CCTCCCGAAGTTG  1044

seq1  TTGGATGTTCCTAGTTGGTGAAGGCCATGTTTTG  1084
       ||||||||||||||||||||||||   ||||||
seq2  -TGGATGTTCCTAGTTGGTGAAGGCATCGTTTTG  1077