BAC Information

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BAC

Clone NameB6Ng01-081J17
Chromosome13 (Build37)
Map Location 23,986,335 - 24,058,868
singlet/doubletdoublet
Overlap geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081J17.bB6Ng01-081J17.g
ACCDH896412DH896413
length952933
definitionDH896412|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J17, 5' end.DH896413|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,057,918 - 24,058,868)(23,986,335 - 23,987,268)
sequence
gaattctatgagtttgaggccgaaactctgtcttgaaaaacaaataaaat
aaagaacttctggtctgtgcatttgtcacatccacgttcctttctgcctt
ttagatgaagatctttgacaaaaataaagatggacgtttggatcttaatg
acttggcaaggtgagtgatgcagaaaagtggcaaactcagaagttcctgt
gtcagggtctgatggtaacacacacctcctttgaaatctgagagccactc
ttgcctggggtctaagagtccaggttcatcttattaaaccctctgtagtg
cttttgaatcactctgggtagcagattctttcatgaagataatcaaagct
ccatcctgcctaaatgcacaatgcatatattatattatagcatagtatat
atattaagaattcatgaatgggtcattggtggattttgccctcagaggct
aggcactcatagtctcacattgggattcccctctaaatccaaaatctaac
aaaacaaaagcaataatgatgatagtgataagaaaataatgataaataaa
tgaaagaatcttgaagctattcactgactttgggaatgttaaattgttat
ttcagagcagtagtaaaaactgattgaattttagtagagccaactctctg
ctggcctttgagggttgactaccctcagtggtgcctgaaggttaatggag
gagaggggaggataagaatgggagcaacatagtccatgagtctgtgaggt
gacttgggattgatggttgcaatatgtatcgttatgtagcttttccgtta
ctataatgaaaggtcagagacagggctaagttatatagagaaaaccttta
attatttcactgttttcagaagctgaatatcataaaagcacaatgtaact
tcaagaaagatttcttgactgtgtcacaccttggttgaaactttaaggat
tg
gaattcaaaggacaagagacagatctcttatctgctgcttgtctttgttg
gtttggcagaggccagcatgatctctgtgagtttgaggtgagactgtctc
tgaagtgagttctaggctagctagggttacacagtaaaaccctgtctcaa
aataacaagaacaaaatcaagtcaaccaaacagaagaactcaaccacaaa
aacaaaacagaacagaataatgtgctctttcttcgttgttgctccagttg
gggccctgtgtgtgcagtctgactttgcatcccaggttctggggaggatg
catgaatccagagctgctgatatggataacaggcaaaggccaggctcatc
ctagtctgtcaatagcaacctctcaacgcctaggtggcagtgatggttct
cagataggtgcttcagtgtagggacacagaagttggagtgtgtgtttggt
tgagaatcaccaagaaaagctttattttcattttcttaatgacaaattcg
tttattgagaactgaaatttgggaacacacagagagagaacctattatca
ctataaatgcaatgtgctgcttttgagagcagcaatatggaactgcaggc
atgccaactctgacggacatagcggggttttaatttgcttgttttgttct
caagatgcagcctcaacacatagtatggaatatccttgtgccctgagaat
ggacctacaaaaatgctgcagatgctcatatattaacacatacatttctc
agggcaggtcaggcacagcaggcagatgaatgtgacaagtgaacacctgg
cagtcatatttatctttatgttcacagggaagacatgtgaaaatggcatt
gataacctttcactggacaagaaagacaacttgagaaaatcttcttagcc
tagactaatgtctctgaagtgttggactcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24057918_24058868
seq2: B6Ng01-081J17.b_44_995 (reverse)

seq1  CAATCCCTAAATGTTTCCACCATGGTGTGACACAGTCAAGAAATTCTTTC  50
      |||||| |||| ||||| |||| |||||||||||||||||||| ||||||
seq2  CAATCCTTAAA-GTTTCAACCAAGGTGTGACACAGTCAAGAAA-TCTTTC  48

seq1  TAGAAGTTACATTGTGCTTTTTTGATATTCAGCTTCTG-AAACAGTGAAA  99
      | ||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TTGAAGTTACATTGTGCTTTTATGATATTCAGCTTCTGAAAACAGTGAAA  98

seq1  TAATTAAATGTTTTCTCTATATAACTTAG-CCTGTCTCTGACCTTTCATT  148
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TAATTAAAGGTTTTCTCTATATAACTTAGCCCTGTCTCTGACCTTTCATT  148

seq1  ATAGTAACGG-AAAGCTACATAACGATACATATAGCAACCATCAATCCCA  197
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  ATAGTAACGGAAAAGCTACATAACGATACATATTGCAACCATCAATCCCA  198

seq1  AGTCACCTCACAGACTCATGGACTATGTTGCTCCCATTCTTATCCTCCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTCACAGACTCATGGACTATGTTGCTCCCATTCTTATCCTCCCC  248

seq1  TCTCCTCCATTAACCTTCAGGCACCACTGAGGGTAGTCAACCCTCAAAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCATTAACCTTCAGGCACCACTGAGGGTAGTCAACCCTCAAAGG  298

seq1  CCAGCAGAGAGTTGGCTCTACTAAAATTCAATCAGTTTTTACTACTGCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAGAGTTGGCTCTACTAAAATTCAATCAGTTTTTACTACTGCTC  348

seq1  TGAAATAACAATTTAACATTCCCAAAGTCAGTGAATAGCTTCAAGATTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAACAATTTAACATTCCCAAAGTCAGTGAATAGCTTCAAGATTCT  398

seq1  TTCATTTATTTATCATTATTTTCTTATCACTATCATCATTATTGCTTTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATTTATCATTATTTTCTTATCACTATCATCATTATTGCTTTTG  448

seq1  TTTTGTTAGATTTTGGATTTAGAGGGGAATCCCAATGTGAGACTATGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGATTTTGGATTTAGAGGGGAATCCCAATGTGAGACTATGAGT  498

seq1  GCCTAGCCTCTGAGGGCAAAATCCACCAATGACCCATTCATGAATTCTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCTCTGAGGGCAAAATCCACCAATGACCCATTCATGAATTCTTA  548

seq1  ATATATATACTATGCTATAATATAATATATGCATTGTGCATTTAGGCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACTATGCTATAATATAATATATGCATTGTGCATTTAGGCAGG  598

seq1  ATGGAGCTTTGATTATCTTCATGAAAGAATCTGCTACCCAGAGTGATTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTTTGATTATCTTCATGAAAGAATCTGCTACCCAGAGTGATTCA  648

seq1  AAAGCACTACAGAGGGTTTAATAAGATGAACCTGGACTCTTAGACCCCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTACAGAGGGTTTAATAAGATGAACCTGGACTCTTAGACCCCAG  698

seq1  GCAAGAGTGGCTCTCAGATTTCAAAGGAGGTGTGTGTTACCATCAGACCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTGGCTCTCAGATTTCAAAGGAGGTGTGTGTTACCATCAGACCC  748

seq1  TGACACAGGAACTTCTGAGTTTGCCACTTTTCTGCATCACTCACCTTGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGGAACTTCTGAGTTTGCCACTTTTCTGCATCACTCACCTTGCC  798

seq1  AAGTCATTAAGATCCAAACGTCCATCTTTATTTTTGTCAAAGATCTTCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTAAGATCCAAACGTCCATCTTTATTTTTGTCAAAGATCTTCAT  848

seq1  CTAAAAGGCAGAAAGGAACGTGGATGTGACAAATGCACAGACCAGAAGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGCAGAAAGGAACGTGGATGTGACAAATGCACAGACCAGAAGTT  898

seq1  CTTTATTTTATTTGTTTTTCAAGACAGAGTTTCGGCCTCAAACTCATAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTATTTGTTTTTCAAGACAGAGTTTCGGCCTCAAACTCATAGA  948

seq1  ATTC  951
      ||||
seq2  ATTC  952

seq1: chr13_23986335_23987268
seq2: B6Ng01-081J17.g_70_1002

seq1  GAATTCAAAGGACAAGAGACAGATCTCTTATCTGCTGCTTGTCTTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGACAAGAGACAGATCTCTTATCTGCTGCTTGTCTTTGTTG  50

seq1  GTTTGGCAGAGGCCAGCATGATCTCTGTGAGTTTGAGGTGAGACTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAGAGGCCAGCATGATCTCTGTGAGTTTGAGGTGAGACTGTCTC  100

seq1  TGAAGTGAGTTCTAGGCTAGCTAGGGTTACACAGTAAAACCCTGTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAGTTCTAGGCTAGCTAGGGTTACACAGTAAAACCCTGTCTCAA  150

seq1  AATAACAAGAACAAAATCAAGTCAACCAAACAGAAGAACTCAACCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAGAACAAAATCAAGTCAACCAAACAGAAGAACTCAACCACAAA  200

seq1  AACAAAACAGAACAGAATAATGTGCTCTTTCTTCGTTGTTGCTCCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAGAACAGAATAATGTGCTCTTTCTTCGTTGTTGCTCCAGTTG  250

seq1  GGGCCCTGTGTGTGCAGTCTGACTTTGCATCCCAGGTTCTGGGGAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGTGTGCAGTCTGACTTTGCATCCCAGGTTCTGGGGAGGATG  300

seq1  CATGAATCCAGAGCTGCTGATATGGATAACAGGCAAAGGCCAGGCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCCAGAGCTGCTGATATGGATAACAGGCAAAGGCCAGGCTCATC  350

seq1  CTAGTCTGTCAATAGCAACCTCTCAACGCCTAGGTGGCAGTGATGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGTCAATAGCAACCTCTCAACGCCTAGGTGGCAGTGATGGTTCT  400

seq1  CAGATAGGTGCTTCAGTGTAGGGACACAGAAGTTGGAGTGTGTGTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGTGCTTCAGTGTAGGGACACAGAAGTTGGAGTGTGTGTTTGGT  450

seq1  TGAGAATCACCAAGAAAAGCTTTATTTTCATTTTCTTAATGACAAATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCACCAAGAAAAGCTTTATTTTCATTTTCTTAATGACAAATTCG  500

seq1  TTTATTGAGAACTGAAATTTGGGAACACACAGAGAGAGAACCTATTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGAACTGAAATTTGGGAACACACAGAGAGAGAACCTATTATCA  550

seq1  CTATAAATGCAATGTGCTGCTTTTGAGAGCAGCAATATGGAACTGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGCAATGTGCTGCTTTTGAGAGCAGCAATATGGAACTGCAGGC  600

seq1  ATGCCAACTCTGACGGACATAGCGGGGTTTTAATTTGCTTGTTTTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACTCTGACGGACATAGCGGGGTTTTAATTTGCTTGTTTTGTTCT  650

seq1  CAAGATGCAGCCTCAACACATAGTATGGAATATCCTTGTGCCCTGAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCAGCCTCAACACATAGTATGGAATATCCTTGTGCCCTGAGAAT  700

seq1  GGACCTAC-AAAATGCTGCAGATGCTCATATATTAACACATACATTTCTC  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTACAAAAATGCTGCAGATGCTCATATATTAACACATACATTTCTC  750

seq1  AGGGCAGGGCAGGGCACAGCAGGGCAGAGGAAGGTGACAAGTGAACACCT  799
      |||||||| || ||||||||| |||||| ||| |||||||||||||||||
seq2  AGGGCAGGTCA-GGCACAGCA-GGCAGATGAATGTGACAAGTGAACACCT  798

seq1  GGCAGTCATATTTATCTTTATGTTCACAGGGAAGACATGTGAAAATGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCATATTTATCTTTATGTTCACAGGGAAGACATGTGAAAATGGCA  848

seq1  TTGATAACCTTTCACTGGACAAGAAAGACAACTTGAGAAAAATCTTC-TA  898
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TTGATAACCTTTCACTGGACAAGAAAGACAACTTGAG-AAAATCTTCTTA  897

seq1  GCCTAGACTAATGTCTCTGAAGTGTTGGACTCTTCA  934
      ||||||||||||||||||||||||||||||||||||
seq2  GCCTAGACTAATGTCTCTGAAGTGTTGGACTCTTCA  933