BAC Information

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BAC

Clone NameB6Ng01-082D22
Chromosome13 (Build37)
Map Location 65,963,536 - 66,106,348
singlet/doubletdoublet
Overlap geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D22.bB6Ng01-082D22.g
ACCDH896857DH896858
length1,0331,110
definitionDH896857|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D22, 5' end.DH896858|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,105,318 - 66,106,348)(65,963,536 - 65,964,661)
sequence
gaattccaaagaagcaggccataatgtcagtgaaagaatgaacttgccaa
aaagagtgagggcaagcaggcaaagatcacgtttctgtcttccacattct
ttataggctgccaccagaagatgtggcccaggtttaaaggtggatcttct
caaaaagacctgaatttagggtgagtcctcacacttcaactgattaatca
agaaaagtctttcacaggtgtactcagtcacttgtattttagttaattct
agatgtagtcaacttgacaatcaaaaataccagcctgagctacatgacat
tctatctcaaagtaaagaatataaaatagaggcagatgtatctctcaatg
ggtagaggtgtttgctgccaagcttgacaacctgaacttgactcccagga
cccacgtgatagaaggaaaaaaaatcaactaacatgaattgtcctctgac
ctccatacatatggacacattaattaattaaaatgcactaaaatatttaa
aaaattaaaaagtagaaattacatcagcacacaactaccatattttaaca
gaaaaaaattataaattagtaattagaggaaagctccaccttaatatttt
gtaccatcattctagacaaatgtttagtcaaaaaagagatttaaaggaaa
aatccttgggactgggtaggtaagatagctcagtgataagcagtgagtat
tgctcttccagagggcccaagttcagttcccagcatccatatcaggcagt
tcacaatcacctgtaactccagccctaggggatctgacacctttagcctc
catcagcacctgcctgcatagatgtgcacataattatacacattattaat
aagtatttaaaataaatattttaattaggagaaaataatattttaacgag
aactcatctgcgtgtagtaacacacctctttaatcccagccctcaagagg
cagaggggggccaacctggtctacatagcacgttctcatccagaattcca
tagaaaagattctatcttccacaaagaaaagga
gaattcattttatagaaacatagtggtcacaagatgaatgaagcaggaga
cattaaagttcctgtttatattaaaagtgatctaaacgacttgctttcag
gtatgatttacaagaatctcttttttcaagagatgtactcaatagtagga
cattcacggggtattgaaactactcttaagggcaaaccttatgcccagca
gcagatgggaaacaccaaacaaactcaaagacattgttggtggttctttg
tctcataatgcttttccaggacttttatatttgtttggtttctgtgttca
tttgttttgttgtgttttgtttcttgtttttaatcccaaagtttcttttt
aagtgtactgtgttttatagtttacgtttttatgtaaattctttttgtga
atttgagtctgtgtgtataggtttcttatacttttccttatcttcttttc
atctgtttatttttcattttgtcttattccagttatttgttttttataat
taataaaaatgatgataacaataataataattctgatgtttagtctataa
caacaaaaagaaaaaaagggtatggattcaaatgtgtggcacagggcagg
aaaatctggaaggagatgggtaaggagagaggcaacctatgttcaataat
agaaaatgagagaagaccatcaatgtacattgtacagctccattccagtg
atgaatcaaataaaatgctctatgacattaaggatgacatcataccttca
tgaagttctgcaggatgtcgcccagtatgtagaagtcatttctaaaaaca
taatggccacctgatgaagaaatgagacattaatgttcacgtctaaattt
atcaatgataaacagacttgccttcatgtatgttttacaagaaactcttt
gtgattataaactacatttatgatggactaccaatagcacttgaaagaaa
aataattgtcacagagaacgtggccatgcttaatcgagcaagcaaaacat
actgtgaggtttctccctaacagatctgaagctcttctagtagctaagaa
tcagcctgacataaatagccagttgactaaggagataaaagctcatacat
aacacagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66105318_66106348
seq2: B6Ng01-082D22.b_45_1077 (reverse)

seq1  TCCTTTTCTTTTTGG-AGATAGAATC-TTTCTATGGAATTCTGGATGGGA  48
      ||||||||||| ||| |||||||||| |||||||||||||||||||| ||
seq2  TCCTTTTCTTTGTGGAAGATAGAATCTTTTCTATGGAATTCTGGATGAGA  50

seq1  ACGTGCTATGTAGACCAGGTTGGCCCACCTCTGCCTCTTGAGGGCTGGGA  98
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACGTGCTATGTAGACCAGGTTGGCCCCCCTCTGCCTCTTGAGGGCTGGGA  100

seq1  TTAAAGAGGTGTGTTACTACACGCAGATGAGTTCTCGTTAAAATATTATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGGTGTGTTACTACACGCAGATGAGTTCTCGTTAAAATATTATT  150

seq1  TTCTCCTAATTAAAATATTTATTTTAAATACTTATTAATAATGTGTATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAATTAAAATATTTATTTTAAATACTTATTAATAATGTGTATAA  200

seq1  TTATGTGCACATCTATGCAGGCAGGTGCTGATGGAGGCTAAAGGTGTCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCACATCTATGCAGGCAGGTGCTGATGGAGGCTAAAGGTGTCAG  250

seq1  ATCCCCTAGGGCTGGAGTTACAGGTGATTGTGAACTGCCTGATATGGATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAGGGCTGGAGTTACAGGTGATTGTGAACTGCCTGATATGGATG  300

seq1  CTGGGAACTGAACTTGGGCCCTCTGGAAGAGCAATACTCACTGCTTATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACTGAACTTGGGCCCTCTGGAAGAGCAATACTCACTGCTTATCA  350

seq1  CTGAGCTATCTTACCTACCCAGTCCCAAGGATTTTTCCTTTAAATCTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTATCTTACCTACCCAGTCCCAAGGATTTTTCCTTTAAATCTCTT  400

seq1  TTTTGACTAAACATTTGTCTAGAATGATGGTACAAAATATTAAGGTGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTAAACATTTGTCTAGAATGATGGTACAAAATATTAAGGTGGAG  450

seq1  CTTTCCTCTAATTACTAATTTATAATTTTTTTCTGTTAAAATATGGTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTAATTACTAATTTATAATTTTTTTCTGTTAAAATATGGTAGT  500

seq1  TGTGTGCTGATGTAATTTCTACTTTTTAATTTTTTAAATATTTTAGTGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGATGTAATTTCTACTTTTTAATTTTTTAAATATTTTAGTGCA  550

seq1  TTTTAATTAATTAATGTGTCCATATGTATGGAGGTCAGAGGACAATTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAATTAATGTGTCCATATGTATGGAGGTCAGAGGACAATTCAT  600

seq1  GTTAGTTGATTTTTTTTCCTTCTATCACGTGGGTCCTGGGAGTCAAGTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGATTTTTTTTCCTTCTATCACGTGGGTCCTGGGAGTCAAGTTC  650

seq1  AGGTTGTCAAGCTTGGCAGCAAACACCTCTACCCATTGAGAGATACATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCAAGCTTGGCAGCAAACACCTCTACCCATTGAGAGATACATCT  700

seq1  GCCTCTATTTTATATTCTTTACTTTGAGATAGAATGTCATGTAGCTCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATTTTATATTCTTTACTTTGAGATAGAATGTCATGTAGCTCAGG  750

seq1  CTGGTATTTTTGATTGTCAAGTTGACTACATCTAGAATTAACTAAAATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATTTTTGATTGTCAAGTTGACTACATCTAGAATTAACTAAAATAC  800

seq1  AAGTGACTGAGTACACCTGTGAAAGACTTTTCTTGATTAATCAGTTGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGAGTACACCTGTGAAAGACTTTTCTTGATTAATCAGTTGAAG  850

seq1  TGTGAGGACTCACCCTAAATTCAGGTCTTTTTGAGAAGATCCACCTTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGACTCACCCTAAATTCAGGTCTTTTTGAGAAGATCCACCTTTAA  900

seq1  ACCTGGGCCACATCTTCTGGTGGCAGCCTATAAAGAATGTGGAAGACAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCACATCTTCTGGTGGCAGCCTATAAAGAATGTGGAAGACAGA  950

seq1  AACGTGATCTTTGCCTGCTTGCCCTCACTCTTTTTGGCAAGTTCATTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGATCTTTGCCTGCTTGCCCTCACTCTTTTTGGCAAGTTCATTCTT  1000

seq1  TCACTGACATTATGGCCTGCTTCTTTGGAATTC  1031
      |||||||||||||||||||||||||||||||||
seq2  TCACTGACATTATGGCCTGCTTCTTTGGAATTC  1033

seq1: chr13_65963536_65964661
seq2: B6Ng01-082D22.g_69_1178

seq1  GAATTCATTTTATAGAAACATAGTGGTCACAAGATGAATGAAGCAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATAGAAACATAGTGGTCACAAGATGAATGAAGCAGGAGA  50

seq1  CATTAAAGTTCCTGTTTATATTAAAAGTGATCTAAACGACTTGCTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGTTCCTGTTTATATTAAAAGTGATCTAAACGACTTGCTTTCAG  100

seq1  GTATGATTTACAAGAATCTCTTTTTTCAAGAGATGTACTCAATAGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTTACAAGAATCTCTTTTTTCAAGAGATGTACTCAATAGTAGGA  150

seq1  CATTCACGGGGTATTGAAACTACTCTTAAGGGCAAACCTTATGCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACGGGGTATTGAAACTACTCTTAAGGGCAAACCTTATGCCCAGCA  200

seq1  GCAGATGGGAAACACCAAACAAACTCAAAGACATTGTTGGTGGTTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGGGAAACACCAAACAAACTCAAAGACATTGTTGGTGGTTCTTTG  250

seq1  TCTCATAATGCTTTTCCAGGACTTTTATATTTGTTTGGTTTCTGTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAATGCTTTTCCAGGACTTTTATATTTGTTTGGTTTCTGTGTTCA  300

seq1  TTTGTTTTGTTGTGTTTTGTTTCTTGTTTTTAATCCCAAAGTTTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTGTGTTTTGTTTCTTGTTTTTAATCCCAAAGTTTCTTTTT  350

seq1  AAGTGTACTGTGTTTTATAGTTTACGTTTTTATGTAAATTCTTTTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACTGTGTTTTATAGTTTACGTTTTTATGTAAATTCTTTTTGTGA  400

seq1  ATTTGAGTCTGTGTGTATAGGTTTCTTATACTCTTCCTTATCTTCTTTTC  450
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTGAGTCTGTGTGTATAGGTTTCTTATACTTTTCCTTATCTTCTTTTC  450

seq1  ATCTGTTTATTTTTCATTTTGTCTTATTCCAGTTATTTGTTTTTTATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTATTTTTCATTTTGTCTTATTCCAGTTATTTGTTTTTTATAAT  500

seq1  TAATAAAAATGATGATAACAATAATAATAATTCTGATGTTTAGTCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATGATGATAACAATAATAATAATTCTGATGTTTAGTCTATAA  550

seq1  CAACAAAAAGAAAAAAAGGGTATGGATTCAAATGTGTGGCACAGGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAGAAAAAAAGGGTATGGATTCAAATGTGTGGCACAGGGCAGG  600

seq1  AAAATCTGGAAGGAGATGGGTAAGGAGAGAGGCAACCTATGTTCAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGGAAGGAGATGGGTAAGGAGAGAGGCAACCTATGTTCAATAAT  650

seq1  AGAAAACGAGAGAAGACCATCAATGTACATTGTACAGCTCCATTCCTGTG  700
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAAAATGAGAGAAGACCATCAATGTACATTGTACAGCTCCATTCCAGTG  700

seq1  ATGAATCAAATAAAATGCTCTATGACATTAAGGATGACATCATACCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAAATAAAATGCTCTATGACATTAAGGATGACATCATACCTTCA  750

seq1  TGAAGTTCTGCAGGATGGCGCCCAGTATGTAGAAGTCATTTTCTAAAAAC  800
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  TGAAGTTCTGCAGGATGTCGCCCAGTATGTAGAAGTCA-TTTCTAAAAAC  799

seq1  ATAATGGCCACCAGATGAAGAAATGAGACATTAATGTTCACGTCTAAA-T  849
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  ATAATGGCCACCTGATGAAGAAATGAGACATTAATGTTCACGTCTAAATT  849

seq1  TATCAATGATTAAACAGACTTGCCTTCATGTATGTTTTACAAGAAACTCT  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  TATCAATGA-TAAACAGACTTGCCTTCATGTATGTTTTACAAGAAACTC-  897

seq1  TTTGTGATTATAAACTTACATTTATGATTGAACTACCAATAGCAACTTTG  949
      ||||||||||||||| ||||||||||| || |||||||||||| ||||  
seq2  TTTGTGATTATAAAC-TACATTTATGA-TGGACTACCAATAGC-ACTT--  942

seq1  AAAAGAAAAATAATTGTCACAGAGAACGTGGCCATGCTTAATCGAGCAAG  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAATAATTGTCACAGAGAACGTGGCCATGCTTAATCGAGCAAG  992

seq1  GAAAACACACGTGTGAGGTTTTCTCCCTAACAGATTCCTGAAGTTTCCTG  1049
       |||||| || ||||||| ||||||||||||||||  |||||| |  || 
seq2  CAAAACATAC-TGTGAGG-TTTCTCCCTAACAGAT--CTGAAGCT--CTT  1036

seq1  CTAAGTAGCTAGAAATCAGTCTGAAATTAAAATAG-CAG-TGACTAAGGA  1097
      || ||||||||  |||||| |||| ||  |||||| ||| ||||||||||
seq2  CT-AGTAGCTAAGAATCAGCCTGACAT--AAATAGCCAGTTGACTAAGGA  1083

seq1  GATTAAAAGCTCATCACATAACACAGTAT  1126
      || ||||||||||| ||||||||||||||
seq2  GA-TAAAAGCTCAT-ACATAACACAGTAT  1110